Utility of Mitochondrial DNA Barcodes in Species Conservation

Abstract:  Molecular tools are a standard part of many conservation studies and can be informative at many different levels of analysis, although there are inherent limitations and strengths of different genes or parts of genes to inform specific questions. Animal DNA barcodes, 600- to 800-base-pair segments of the mitochondrial gene cytochrome oxidase I, have been proposed as a means to quantify global biodiversity. Although mitochondrial (mt) DNA has a long history of use at the species level, recent analyses suggest that the use of a single gene, particularly mitochondrial, is unlikely to yield data that are balanced, universally acceptable, or sufficient in taxonomic scope to recognize many species lineages. Mitochondrial and nuclear genomes have different patterns of evolution and modes of inheritance, which can result in very different assessments of biodiversity. The ramifications of choosing a particular definition of species (species concept) need to be carefully considered because current efforts have designated DNA barcodes as the universal species concept without demonstrating its superiority over preexisting concepts. The results of such a barcoding paradigm may include a failure to recognize significant portions of biodiversity or nuclear/mitochondrial mixed lineages and could spuriously focus conservation resources on populations with relatively minor mtDNA divergence. DNA barcodes are most likely to provide potentially useful information for groups that are already well studied, and such taxa do not constitute the majority of biodiversity or those in most need of research attention. DNA barcode-length sequences are an important source of data but, when used alone or out of context, may offer only a fraction of the information needed to characterize species while taking resources from broader studies that could produce information essential to robust and informed conservation decisions.     

Conservation Value of Non-Native Banteng in Northern Australia

Abstract:  The global species extinction crisis has provided the impetus for elaborate translocation, captive breeding, and cloning programs, but more extreme actions may be necessary. We used mitochondrial DNA, Y-chromosome, and nuclear lactoferrin-encoding gene sequencing to identify a wild population of a pure-strain endangered bovid ( Bos javanicus ) introduced into northern Australia over 150 years ago. This places the Australian population in a different conservation category relative to its domesticated conspecific in Indonesia (i.e., Bali cattle) that has varying degrees of introgression from other domesticated Bos spp. The success of this endangered non-native species demonstrates that although risky, the deliberate introduction of threatened exotic species into non-native habitat may provide, under some circumstances, a biologically feasible option for conserving large herbivores otherwise imperiled in their native range.     

A Global Indicator for Biological Invasion

Abstract:  "Trends in invasive alien species" is one of only two indicators of threat to biodiversity that form part of the Convention on Biological Diversity's (CBD) framework for monitoring progress toward its "2010 target" (i.e., the commitment to achieve by 2010 a significant reduction in the current rate of biodiversity loss). To date, however, there is no fully developed indicator for invasive alien species (IAS) that combines trends, derived from a standard set of methods, across species groups, ecosystems, and regions. Here we provide a rationale for the form and characteristics of an indicator of trends in IAS that will meet the 2010 framework goal and targets for this indicator. We suggest single and composite indicators that include problem-status and management-status measures that are designed to be flexible, readily disaggregated, and as far as possible draw on existing data. The single indicators at national and global scales are number of IAS and numbers of operational management plans for IAS. Global trends in IAS are measured as the progress of nations toward the targets of stabilizing IAS numbers and the implementation of IAS management plans. The proposed global indicator thus represents a minimum information set that most directly addresses the indicator objective and simultaneously aims to maximize national participation. This global indicator now requires testing to assess its accuracy, sensitivity, and tractability. Although it may not be possible to achieve the desired objective for a global indicator of biological invasion by 2010 as comprehensively as desired, it seems possible to obtain trend estimates for a component of the taxa, ecosystems, and regions involved. Importantly, current indicator development initiatives will also contribute to developing the mechanisms necessary for monitoring global trends in IAS beyond 2010.     

沈阳市区大气颗粒物元素组分及其分布

本研究采用美国安德逊五段冲击式采样器进行大气颗粒物采样，用中子活化法进行分析，获得４３种元素质量浓度，并求得各种元素的质量中值直径和几何标准差。     

Secondary metabolism — evolution and function: Products or processes?

Summary The distinguishing characteristics of secondary metabolism and its associated metabolites are outlined. Current theories relating to the function of secondary metabolism in plants and micro-organisms are enumerated and the view that consideration of the processes rather than the products may best explain the origins of secondary metabolism is discussed.     

Resampling from stochastic simulations

To model the uncertainty of an estimate of a global property, the estimation process is repeated on multiple simulated fields, with the same sampling strategy and estimation algorithm. As opposed to conventional bootstrap, this resampling scheme allows for spatially correlated data and the common situation of preferential and biased sampling. The practice of this technique is developed on a large data set where the reference sampling distributions are available. Comparison of the resampled distributions to that reference shows the probability intervals obtained by resampling to be reasonably accurate and conservative, provided the original and actual sample has been corrected for the major biases induced by preferential sampling.Andre G. Journel is a Professor of Petroleum Engineering at Stanford University with a joint appointment in the Department of Geological and Environmental Sciences. He is, also, Director of the Stanford Center for Reservoir Forecasting. Professor Journel has pioneered applications of geostatistical techniques in the mining/petroleum industry and extended his expertise to environmental applications and repository site characterization. Most notably, he developed the concept of non-parametric geostatistics and stochastic imaging with application to modeling uncertainty in reservoir/site characterization. Although the research described in this article has been supported by the United States Environmental Protection Agency under Cooperative Agreement CR819407, it has not been subjected to Agency review and therefore does not necessarily reflect the views of the Agency and no official endorsement should be inferred.     

生态毒理基因组学——后基因组时代生态毒理学的新领域

基因组学、蛋白组学和代谢组学技术为生态毒理学的发展提供了生物高通量的技术手段,构成了新的交叉学科——生态毒理基因组学.生态毒理基因组学着重研究环境毒物暴露下非靶生物基因和蛋白的表达,能够在基因组水平上更深入地理解环境污染物的致毒机制,同时,它引进生物标志物为生态风险评价提供了平台.论文对生态毒理基因组学的发展历程、技术支持、模式生物及其在生态风险评价方面的应用进行了综述,以推动生态毒理基因组学技术在我国的进一步发展.     

珍稀濒危植物金花茶地理分布与生境调查研究

为了对珍稀濒危植物金花茶(Camellia nitidissima)进行有效保护,通过实地调查和相关资料分析,对其地理分布与生境进行了系统的调查研究。调查结果表明:(1)金花茶主要分布在广西西南部的防城、南宁、隆安、扶绥等县(市)。位于北纬21°30′～22°55′,东经107°36′～108°33′区域内。金花茶的垂直分布高度在12～450m之间,以海拔200～300m之间的范围较为常见。(2)金花茶为喜暖热植物,对热量要求较高,属热带性树种。金花茶不能忍耐阳光直射,为喜荫耐荫植物,要求的光合有效辐射一般小于photons12.8μmol?m-2?s-1。(3)金花茶群落植物组成种类多样,且多属热带性树种。组成群落主要科有橄榄科(Burseraceae)、山榄科(Sapotaceae)、大戟科(Euphorbiaceae)、桑科(Moraceae)、藤黄科(Guttiferae)、无患子科(Sapindaceae)、番荔枝科(Annonaceae)、梧桐科(Sterculiaceae)的种类。研究结果摸清了金花茶的地理分布和主要生态特性,为金花茶的引种驯化和种质资源的保存提供科学依据。     

城市绿化中选择净化空气的植物配植

文章叙述了在城市绿化中选择净化空气的植物配植的方法、原则，介绍了几种对大气污染吸收净化能力强的植物种类，和室内选择净化空气的花草。