Metabolomic modulations in a freshwater microbial community exposed to the fungicide azoxystrobin

An effective broad-spectrum fungicide, azoxystrobin (AZ), has been widely detected in aquatic ecosystems, potentially affecting the growth of aquatic microorganisms. In the present study, the eukaryotic alga Monoraphidium sp. and the cyanobacterium Pseudanabaena sp. were exposed to AZ for 7 days. Our results showed that 0.2–0.5 mg/L concentrations of AZ slightly inhibited the growth of Monoraphidium sp. but stimulated Pseudanabaena sp. growth. Meanwhile, AZ treatment effectively increased the secretion of total organic carbon (TOC) in the culture media of the two species, and this phenomenon was also found in a freshwater microcosm experiment (containing the natural microbial community). We attempted to assess the effect of AZ on the function of aquatic microbial communities through metabolomic analysis and further explore the potential risks of this compound. The metabonomic profiles of the microcosm indicated that the most varied metabolites after AZ treatment were related to the citrate cycle (TCA), fatty acid biosynthesis and purine metabolism. We thereby inferred that the microbial community increased extracellular secretions by adjusting metabolic pathways, which might be a stress response to reduce AZ toxicity. Our results provide an important theoretical basis for further study of fungicide stress responses in aquatic microcosm microbial communities, as well as a good start for further explorations of AZ detoxification mechanisms, which will be valuable for the evaluation of AZ environmental risk.     

不同基质生物炭对厌氧处理餐厨垃圾效能及微生态的影响

探究了剩余污泥（SS）、餐厨垃圾（FW）、玉米芯（CC）、甘蔗渣（BG）4种不同基质生物炭对厌氧生物处理餐厨垃圾效能的影响,对厌氧污泥的关键酶活性、微生物群落分布以及代谢途径等微生态进行了分析.结果表明,厌氧反应器分别加入4种生物炭后,COD平均去除率分别提高了29.49%、23.16%、29.42%、40.32%;傅里叶红外分析表明,投加SS生物炭组出水中羟基、酰胺基以及C-O-C伸缩振动峰减弱.4个厌氧反应器中厌氧污泥的乙酸激酶活性分别为0.40,0.42,0.96,0.98 μmol/g,表明投加CC与BG生物炭促进了餐厨垃圾的厌氧水解酸化过程;厌氧污泥胞外聚合物的蛋白质/多糖之比分别为0.415、0.56、1.89、2.8,投加CC、BG生物炭提高了污泥的稳定性.4个厌氧反应器中拟杆菌门、变形菌门、厚壁菌门为主要菌群,投加BG生物炭促进了变形菌门与厚壁菌门的生长;对于古细菌而言,甲烷杆菌属与甲烷丝菌属为优势种群,SS组的甲烷杆菌属丰度最高（53.48%）,而BG组中甲烷丝菌属丰度最高（42.72%）.KEGG功能分析表明古菌及细菌均以碳水化合物代谢、氨基酸代谢为主;而投加BG与SS生物炭后,微生物膜运输水平得到了提高.     

构树修复对重金属污染土壤环境质量的影响

通过温室盆栽试验,研究构树（Broussonetia papyrifera）生长对重金属污染土壤酶活性和微生物群落结构的影响.结果表明,构树修复污染土壤中酶活性和微生物多样性明显提高.经270d培养后,构树生长土壤中蔗糖酶和酸性磷酸酶活性与种植土壤相比分别显著（P<0.05）提高3.12倍和2.29倍;土壤脱氢酶与有效态As、Cd、Pb、Zn和Cu含量,蔗糖酶与有效态Cd含量,以及磷酸酶与有效态Cd和Cu含量之间呈显著负相关（P<0.05）.根据16S和18S rDNA PCR-DGGE分析表明,构树修复可提高污染土壤中细菌和丛枝菌根真菌多样性.上述结果表明,构树修复可有效改善重金属污染土壤的环境质量.然而,污染土壤中重金属有效态含量下降不明显,必须辅助物理和化学措施来强化构树对重金属污染土壤的生态修复潜力.     

Long-term effects of environmentally relevant concentrations of silver nanoparticles on microbial biomass, enzyme activity, and functional genes involved in the nitrogen cycle of loamy soil

The increasing production and use of engineered silver nanoparticles (AgNP) in industry and private households are leading to increased concentrations of AgNP in the environment. An ecological risk assessment of AgNP is needed, but it requires understanding the long term effects of environmentally relevant concentrations of AgNP on the soil microbiome. Hence, the aim of this study was to reveal the long-term effects of AgNP on soil microorganisms. The study was conducted as a laboratory incubation experiment over a period of one year using a loamy soil and AgNP concentrations ranging from 0.01 to 1?mg?AgNP/kg soil. The short term effects of AgNP were, in general, limited. However, after one year of exposure to 0.01?mg?AgNP/kg, there were significant negative effects on soil microbial biomass (quantified by extractable DNA; p?=?0.000) and bacterial ammonia oxidizers (quantified by amoA gene copy numbers; p?=?0.009). Furthermore, the tested AgNP concentrations significantly decreased the soil microbial biomass, the leucine aminopeptidase activity (quantified by substrate turnover; p?=?0.014), and the abundance of nitrogen fixing microorganisms (quantified by nifH gene copy numbers; p?=?0.001). The results of the positive control with AgNO3 revealed predominantly stronger effects due to Ag⁺ ion release. Thus, the increasing toxicity of AgNP during the test period may reflect the long-term release of Ag⁺ ions. Nevertheless, even very low concentrations of AgNP caused disadvantages for the microbial soil community, especially for nitrogen cycling, and our results confirmed the risks of releasing AgNP into the environment.     

水稻土中五氯酚的降解转化动态及其对微生物群落的影响

采用室内培养实验,研究厌氧条件下水稻土中五氯酚(Pentachlorophenol,PCP)的还原转化与微生物群落组成变化。结果表明,室内培养实验条件下,PCP在水稻土样品中降解比较迅速,在反应17 d时,实验添加的PCP能够完全被还原转化。高通量测序结果显示PCP的添加明显改变了水稻土壤的微生物群落结构,其微生物多样性显著下降,在PCP降解完之后逐渐恢复。原始土壤以及添加PCP的土壤样品中其优势微生物主要分布在变形菌门(Proteobacteria)。PCP添加刺激了水稻土中伯克氏菌科(Burkholderiaceae)、丛毛单胞菌科(Comamonadaceae)、地杆菌科(Geobacteraceae)、红环菌科(Rhodocyclaceae)和假单胞菌科(Pseudomonadaceae)等脱氯相关的微生物菌群繁殖,成为PCP降解过程中的优势菌群,有利于PCP还原降解。本研究结果可为水稻土中有机氯农药污染物的微生物降解脱毒提供理论依据。     

Microbiological characteristics in a zero-valent iron reactive barrier

Zero-valent iron (Fe⁰)-based permeable reactive barriertreatment has been generating great interest for passivegroundwater remediation, yet few studies have paid particularattention to the microbial activity and characteristics withinand in the vicinity of the Fe⁰-barrier matrix. The presentstudy was undertaken to evaluate the microbial population andcommunity composition in the reducing zone of influence byFe⁰ corrosion in the barrier at the Oak Ridge Y-12 Plantsite. Both phospholipid fatty acids and DNA analyses were usedto determine the total microbial population and microbialfunctional groups, including sulfate-reducing bacteria,denitrifying bacteria, and methanogens, in groundwater andsoil/iron core samples. A diverse microbial community wasidentified in the strongly reducing Fe⁰ environment despitea relatively high pH condition within the Fe⁰ barrier (up topH 10). In comparison with those found in the backgroundsoil/groundwater samples, the enhanced microbial populationranged from 1 to 3 orders of magnitude and appeared to increase from upgradient of the barrier to downgradient soil. Inaddition, microbial community composition appeared to change overtime, and the bacterial types of microorganismsincreased consistently as the barrier aged. DNA analysisindicated the presence of sulfate-reducing and denitrifyingbacteria in the barrier and its surrounding soil. However, theactivity of methanogens was found to be relatively low,presumably as a result of the competition by sulfate/metal-reducing bacteria and denitrifying bacteria because of the unlimited availability of sulfate and nitrate in the site groundwater. Results of this study provide evidenceof a diverse microbial population within and in the vicinity ofthe iron barrier, although the important roles of microbial activity, either beneficially or detrimentally, on the longevityand enduring efficiency of the Fe⁰ barriers are yet to be evaluated.     

Application of the benthic index of biotic integrity to environmental monitoring in Chesapeake Bay

The Chesapeake Bay benthic index of biotic integrity (B-IBI) was developed to assess benthic community health and environmental quality in Chesapeake Bay. The B-IBI provides Chesapeake Bay monitoring programs with a uniform tool with which to characterize bay-wide benthic community condition and assess the health of the Bay. A probability-based design permits unbiased annual estimates of areal degradation within the Chesapeake Bay and its tributaries with quantifiable precision. However, of greatest interest to managers is the identification of problem areas most in need of restoration. Here we apply the B-IBI to benthic data collected in the Bay since 1994 to assess benthic community degradation by Chesapeake Bay Program segment and water depth. We used a new B-IBI classification system that improves the reliability of the estimates of degradation. Estimates were produced for 67 Chesapeake Bay Program segments. Greatest degradation was found in areas that are known to experience hypoxia or show toxic contamination, such as the mesohaline portion of the Potomac River, the Patapsco River, and the Maryland mainstem. Logistic regression models revealed increased probability of degraded benthos with depth for the lower Potomac River, Patapsco River, Nanticoke River, lower York River, and the Maryland mainstem. Our assessment of degradation by segment and water depth provided greater resolution of relative condition than previously available, and helped define the extent of degradation in Chesapeake Bay.     

中国水环境的NPSP问题及对策

介绍了我国水环境中的非点源污染（ＮｏｎｐｏｉｎｔＳｏｕｒｃｅｐｏｌｌｕｔｉｏｎ，缩写为ＮＰＳＰ）的情况，强调农业生产是最主要的非点源污染。同时，针对我国水污染防治的政策目标，提出一些建议。     

中国北方干旱地区沙尘矿物特征研究

为了开展对我国沙暴传输规律的研究,了解我国北方干旱地区沙尘矿物特征有重要意义。本文对我国新疆塔克拉玛干沙漠区,内蒙腾格里沙漠区,贺兰山及银川等处的沙尘样品用X射线粉末衍射法进行矿物分析鉴定,并用原子吸收法作了特征元素的分析对比,根据矿物的X射线粉末衍射结果,结合元素分析,对沙漠源区及其以东地区沙尘矿物特征作了比较,判析了两个源区的矿物组成,讨论了它们的传输过程。     

Characterization of microbial communities from coastal waters using microarrays

Molecular methods, including DNA probes, were used to identify and enumerate pathogenic Vibrio species in the Chesapeake Bay; our data indicated that Vibrio vulnificus exhibits seasonal fluctuations in number. Our work included a characterization of total microbial communities from the Bay; development of microarrays that identify and quantify the diversity of those communities; and observation of temporal changes in those communities. To identify members of the microbial community, we amplified the 16S rDNA gene from community DNA isolated from a biofilm sample collected from the Chesapeake Bay in February, 2000. The resultant 75 sequences were 95% or more similar to 7 species including two recently described Shewanella species, baltica and frigidimarina, that have not been previously isolated from the Chesapeake. When the genera of bacteria from biofilm after culturing are compared to those detected by subcloning amplified 16S fragments from community DNA, the cultured sample exhibited a strong bias. In oysters collected in February, the most common bacteria were previously unknown. Based on our 16S findings, we are developing microarrays to detect these and other microbial species in these estuarine communities. The microarrays will detect each species using four distinct loci, with the multiple loci serving as an internal control. The accuracy of the microarray will be measured using sentinel species such as Aeromonas species, Escherichia coli, and Vibrio vulnificus. Using microarrays, it should be possible to determine the annual fluctuations of bacterial species (culturable and non-culturable, pathogenic and non-pathogenic). The data may be applied to understanding patterns of environmental change; assessing the health of the Bay; and evaluating the risk of human illness associated with exposure to and ingestion of water and shellfish.