Investigation on the interaction between triclosan and bovine serum albumin by spectroscopic methods

Abstract

Multi-spectroscopic and molecular docking methods were used to study the interaction between triclosan (TCS) and bovine serum albumin (BSA). The results indicated that the fluorescence quenching of BSA by TCS was due to the formation of TCS–BSA complex through static quenching. This result was also demonstrated by time-resolved fluorescence experiment. The binding constants and number of binding sites between TCS and BSA were 1.30?×?10⁵ M^?1 and 1.17 at 298?K, respectively. The thermodynamic parameters were studied in detail which suggested that hydrophobic forces and hydrogen bond played major roles in the TCS–BSA interaction. Moreover, the site marker competitive experiments and docking studies revealed that TCS could bind BSA into site I in subdomain IIA. All the results of UV–vis spectrophotometry, circular dichroism spectroscopy and synchronous fluorescence spectroscopy showed that interaction between TCS and BSA induced conformation changes of BSA.     

Estimating the normal background rate of species extinction

A key measure of humanity's global impact is by how much it has increased species extinction rates. Familiar statements are that these are 100–1000 times pre‐human or background extinction levels. Estimating recent rates is straightforward, but establishing a background rate for comparison is not. Previous researchers chose an approximate benchmark of 1 extinction per million species per year (E/MSY). We explored disparate lines of evidence that suggest a substantially lower estimate. Fossil data yield direct estimates of extinction rates, but they are temporally coarse, mostly limited to marine hard‐bodied taxa, and generally involve genera not species. Based on these data, typical background loss is 0.01 genera per million genera per year. Molecular phylogenies are available for more taxa and ecosystems, but it is debated whether they can be used to estimate separately speciation and extinction rates. We selected data to address known concerns and used them to determine median extinction estimates from statistical distributions of probable values for terrestrial plants and animals. We then created simulations to explore effects of violating model assumptions. Finally, we compiled estimates of diversification—the difference between speciation and extinction rates for different taxa. Median estimates of extinction rates ranged from 0.023 to 0.135 E/MSY. Simulation results suggested over‐ and under‐estimation of extinction from individual phylogenies partially canceled each other out when large sets of phylogenies were analyzed. There was no evidence for recent and widespread pre‐human overall declines in diversity. This implies that average extinction rates are less than average diversification rates. Median diversification rates were 0.05–0.2 new species per million species per year. On the basis of these results, we concluded that typical rates of background extinction may be closer to 0.1 E/MSY. Thus, current extinction rates are 1,000 times higher than natural background rates of extinction and future rates are likely to be 10,000 times higher. Estimación de la Tasa Normal de Extinción de Especies     

Progress in the ecology and conservation of giant pandas

Giant panda (Ailuropoda melanoleuca) conservation is a possible success story in the making. If extinction of this iconic endangered species can be avoided, the species will become a showcase program for the Chinese government and its collaborators. We reviewed the major advancements in ecological science for the giant panda, examining how these advancements have contributed to panda conservation. Pandas’ morphological and behavioral adaptations to a diet of bamboo, which bear strong influence on movement ecology, have been well studied, providing knowledge to guide management actions ranging from reserve design to climate change mitigation. Foraging ecology has also provided essential information used in the creation of landscape models of panda habitat. Because habitat loss and fragmentation are major drivers of the panda population decline, efforts have been made to help identify core habitat areas, establish where habitat corridors are needed, and prioritize areas for protection and restoration. Thus, habitat models have provided guidance for the Chinese governments’ creation of 67 protected areas. Behavioral research has revealed a complex and efficient communication system and documented the need for protection of habitat that serves as a communication platform for bringing the sexes together for mating. Further research shows that den sites in old‐growth forests may be a limiting resource, indicating potential value in providing alternative den sites for rearing offspring. Advancements in molecular ecology have been revolutionary and have been applied to population census, determining population structure and genetic diversity, evaluating connectivity following habitat fragmentation, and understanding dispersal patterns. These advancements form a foundation for increasing the application of adaptive management approaches to move panda conservation forward more rapidly. Although the Chinese government has made great progress in setting aside protected areas, future emphasis will be improved management of pandas and their habitat.     

人工接种堆肥和自然堆肥微生物区系与分子多态性的变化

采用传统培养方法和PCR-DGGE技术研究了人工接种堆肥和自然堆肥微生物群落的演变过程。结果表明:(1)传统培养方法显示,两种堆肥堆制过程中微生物数量均呈“升高—降低—升高—降低”变化趋势,整个堆肥过程中细菌数量占优势。(2)DGGE图谱显示,两种堆肥不同时期存在不同的细菌种群,其条带数量亦呈“升高—降低—升高—降低”变化趋势。堆肥升温期条带丰富但优势条带不明显;堆肥高温期条带数量减少但出现优势条带,表明高温阶段以嗜热菌或耐高温菌为主;堆肥降温期条带数量再次增多;堆肥腐熟期条带数量少且无优势条带,表明腐熟阶段微生物种群数量少且代谢强度趋于平缓。(3)DGGE图谱表明,人工接种菌株成为堆肥高温期优势菌株。人工接种增加了堆肥中微生物总量,提高了堆肥微生物种群多样性,并且促进了堆肥菌群演替,从而缩短堆肥腐熟时间。     

拓扑指数在定量结构生物降解性关系中的应用

本文采用二氧化碳生成量实验，对训练组有机物，利用逐步回归分析程序，从计算和十四种分子连接性指数中筛选出与生物降解性最为相关的分子结构描述参数，建立定量结构－生物降解性关系模型，其相关系数为０．９３１，利用该模型对预测组质的预测结果表明，此模型对芳香化合物的好氧生物降解性具有良好的预测能力，其正确预测率达８３．３％。     

Managing Individuals' Contributions to Maximize the Allelic Diversity Maintained in Small, Conserved Populations

Abstract:  The maintenance of diversity is, from a genetic perspective, one of the key aims in a conservation program. Because the most widely used measure of genetic diversity is the expected heterozygosity of the population, or gene diversity (GD), most research has been devoted to finding optimal strategies for maximizing this parameter. Little attention has been paid, however, to the development of strategies to manage allelic diversity (AD), the number of alleles maintained in the population. Using computer simulations, we show that the strategies that maximize GD, by managing contributions from parents, keep levels of AD as high as strategies maximizing AD itself, for a wide range of situations including different numbers of molecular markers used and the possibility of evaluating a number of offspring per parent to make decisions. Because maximization of GD also minimizes levels of inbreeding, this should be the strategy of choice in any conservationprogram.     

识别黄山药、穿龙薯蓣和盾叶薯蓣的分子标记建立

在对黄山药、穿龙薯蓣和盾叶薯蓣的psbA-trnH片段序列分析的基础上,根据3种薯蓣在该片段上的特征序列位点设计了用于识别3种薯蓣的寡核苷酸片段,并作为PCR反应的引物,将3种薯蓣的特征标记引物与psbAf-trn-Hr配合使用建立了识别3种薯蓣的显性和共显性两种检测方式,辅以NaOH碱法快速提取薯蓣干燥根茎总DNA,为3种薯蓣相互间快速、准确的鉴别创造了条件.图3表2参9     

Concentration Evolution of Gas Species within a Collapsing Bubble in a Liquid Medium

In this study numerical methods are used to investigate the relationship between chemical concentration of gas species within a cavitating bubble, equilibrium radius of the gas bubble and pressure variations in the ambient liquid. For this purpose, governing equations are developed to describe the dynamic equilibrium of a bubble in a flowing fluid and mass transfer between gas and liquid phases, where it was assumed that gases undergo isothermal compression, obey the ideal gas law, Henry law. It is further assumed that the concentration of each phase within the bubble is uniform. The resulting nonlinear equations are solved using implicit Trapezoidal method with Newton iteration. Four gas species are modeled under various initial and ambient pressure variation conditions. These conditions maybe considered to represent typical cavitation events. The numerical results obtained are presented in terms of dimensionless numbers. These results indicate that chemical damage maybe an important component of cavitation surface damage, since high concentration profiles may develop within a collapsing bubble. Proposed formulation and numerical solutions are simple and cost effective to implement. The results presented in this study maybe used to benchmark experimental investigations or other more complex solutions, which are outside the scope of this study.     

Modelling the environmental degradation of water contaminants. Kinetics and mechanism of the riboflavin-sensitised-photooxidation of phenolic compounds

The aerobic visible-light-photosensitised irradiation of methanolic solutions of either of the phenolic-type contaminants model compounds (ArOH) p-phenylphenol (PP), p-nitrophenol (NP) and phenol (Ph), and for two additional phenolic derivatives, namely p-chlorophenol (ClP) and p-methoxyphenol (MeOP), used in some experiments, was carried out. Employing the natural pigment riboflavin (Rf) as a sensitiser, the degradation of both the ArOH and the very sensitiser was observed. A complex mechanism, common for all the ArOH studied, operates. It involves superoxide radical anion (O₂^√−) and singlet molecular oxygen (O₂(¹Δ_g)) reactions. Maintaining Rf in sensitising concentrations levels (≈0.02 mM), the mechanism is highly dependent on the concentration of the ArOH. Kinetic experiments of oxygen and substrate consumption, static fluorescence, laser flash photolysis and time-resolved phosophorescence detection of O₂(¹Δ_g) demonstrate that at ArOH concentrations in the order of 10 mM, no chemical transformation occurs due to the complete quenching of Rf singlet excited state. When ArOH is present in concentrations in the order of mM or lower, O₂^√− is generated from the corresponding Rf radical anion, which is produced by electron transfer reaction from the ArOH to triplet excited Rf. The determined reaction rate constants for this step show a fairly good correlation with the electron-donor capabilities for Ph, PP, NP, ClP and MeOP. In this context, the main oxidative species is O₂^√−, since O₂(¹Δ_g) is quenched in an exclusive physical fashion by the ArOH. The production of O₂^√− regenerates Rf impeding the total degradation of the sensitiser. This kinetic scheme could partially model the fate of ArOH in aquatic media containing natural photosensitisers, under environmental conditions.     

生物强化系统微生物分子诊断技术的应用及新发展

现代分子生物技术的飞速发展及其在环境研究领域的应用，为生物强化技术的研究和发展提供了新方法和新思路。本文从生物强化系统特异微生物检测及定量化技术、生物强化系统微生物群落结构组成及动态演替规律研究、生物强化作用机制的分子生物学解析、生物强化菌的基因工程构建、生物强化系统微生物的安全释放及控制技术几方面，对生物强化系统微生物分子诊断技术的应用和发展作了较为全面的综述。