调水和季节变化对河流沉积物古菌群落的影响

采用高通量测序方法分析了汾河引黄河段沉积物中古菌群落的组成、相对丰度、多样性,及其与环境因子之间的相关性,揭示引黄调水和季节变化对古菌群落结构的影响.结果表明：冬季时水体SO₄^2-、Cl^-、Na⁺、K⁺等离子浓度、EC、TDS （总溶解固体含量）、沉积物碱解氮和速效磷含量是影响古菌群落结构的主要环境因子,夏季时沉积物pH值、有机质和速效磷含量是主要环境因子.黄河水汇入后河流沉积物中出现了上游未检测到的古菌类群,如TMEG （norank_f_Terrestrial_Miscellaneous_Group）、洛基古菌等.引黄还可以使甲烷杆菌和海洋古菌等在不适宜其生存的时期活跃起来,丰度明显增加.冬季引黄河段古菌数量增加,多样性提高,夏季则相反.季节变化改变了古菌群落的空间相似关系,然而引黄的贡献较季节变化大.研究河段沉积物中古菌群落组成丰富,包含多种至今未被分类定义的古菌.     

不同外碳源对尾水极限脱氮性能及微生物群落结构的影响

投加外碳源是污水厂尾水深度脱氮的重要手段.为充分对比多种碳源在极限脱氮条件下的性能及经济性,以及碳源对微生物种群结构的影响,选取甲醇、乙醇、葡萄糖和乙酸钠这4种单碳源,并采用反应速率较高的乙酸钠和乙醇与价格便宜的葡萄糖配制成4种复合碳源进行研究.结果表明,所有系统均能满足出水ρ（NO_x^--N）≤1.0mg·L^-1的要求.单碳源系统,乙醇反应速率最快,投加量最省,费用最低.复合碳源系统,乙酸钠/葡萄糖（1：1）在COD/ρ（N）为6时,与乙酸钠/葡萄糖（1：3）、乙醇/葡萄糖（1：1）和乙醇/葡萄糖（1：3）在COD/ρ（N）为9、10和10时的效果相当,且乙酸钠/葡萄糖（1：1）系统反应速率最快且经济性最好.Illumina MiSeq高通量测序显示,经70 d左右的运行,微生物群落结构发生根本性变化.在与葡萄糖相关的系统,常规脱氮系统不常见的菌门Candidatus Saccharibacteria,丰度从种泥的1.16%提高到47.37%;相应地,在属水平Saccharibacteria_genera_incertae_sedis成为绝对优势菌种.研究结果可为污水厂尾水极限脱氮的碳源选择提供更全面的对比,也为碳源在微生物菌群驯化方面的作用提供更多参考和借鉴.     

Composite Biofilms grown in Acidic Mining Lakes and assessed by Electron Microscopy and Molecular Techniques

Microbial consortia of composite biofilms, grown in surface water of acidicmining lakes near Lauchhammer, Germany, were investigated. The red-brown colored lake water was acidic (pH 2.5), had high concentrations of Fe(III), Al(III), and sulphate and low concentrations of dissolved organic matter. As a result the abundance of bacteria in the lake is with 10⁴ cells mL^-1 rather low. One input of organic material into the lake are autumnal leaves from trees, growing in the lakeside area. From aliquots of unfixed birch leave biofilms the 16S rRNA genes were amplified by PCR and community fingerprints were determined by single-strand conformation polymorphism (SSCP) analysis. Specific bands within the fingerprints were extracted from SSCP gels and sequenced for the taxonomical affiliation.These results were compared with those from the second type of biofilms which were grown on sterile substrata, floating submersed in surface waters of the lakes. By excising the bands from the gel and sequencing the individual bands bacterial taxa, common to both types of biofilms, were found but also some, which were only present in one type of biofilm. Ultrathin sectioned biofilms often showed bacteria associated with electron dense particles as main inorganic constituents. Elemental microanalysis by energy dispersive X-ray analysis (EDX) revealed them to contain iron, sulfur and oxygen as main elemental fractions and electron diffraction ring pattern analysis classified them to be schwertmannite. These bacteria and their interactions with each other as well as with the inorganic minerals formed in this lake generally is of great interest, in order to use these results for bioremediation applications.     

某石油污染地下水溶解性无机碳低异常的微生物地球化学成因探析

微生物地球化学作用往往导致石油污染场地地下水中溶解性无机碳(DIC)升高,而华北某石油污染场地地下水DIC低异常明显.为究其机理,在水文地球化学分析和16S rRNA基因高通量测序基础上,结合含水层结构及流场特征,剖析了地下水水化学和微生物两方面作用,辨识了地下水中DIC变异的主导因素,揭示了其中的生物地球化学作用的机理,发现该场地地下水DIC低异常可能与地下水中具有较高浓度钙镁离子和较高活性自养微生物有关,自养微生物代谢及诱导产生碳酸盐岩沉淀作用极可能是该场地地下水中DIC低异常的成因.推测机理为:Hydrogenophaga和Sedimentibacter等菌属微生物在氢化酶的作用下产氢气,Hydrogenophaga、Pseudomonas、Pseudoxanthomonas、Polynucleobacter等固碳微生物和产甲烷微生物利用氢气作为能源,将DIC合成有机碳,并产生碱性微环境,促使Ca~(2+)和Mg~(2+)与DIC反应形成碳酸钙镁沉淀.     

一株产生物絮凝剂的Bacillus sp.的分离与鉴定

从重庆城南污水处理厂的活性污泥中分离筛选到一株絮凝剂产生菌,革兰氏染色呈阳性,好氧,有芽孢,可运动,短杆;分离菌的基因组DNA(G +C)mol%含量测定为5 0 .6 % ,16SrRNA序列分析表明,分离筛选出的絮凝剂产生菌的16SrRNA基因序列与Bacillus菌有高度同源性,从而确定絮凝剂产生菌RL - 2归于Bacillusbrevis菌属。絮凝实验表明:在有CaCl2 存在时用Bacillussp .RL - 2生物絮凝剂处理土壤悬液时用量少(10 0mL样品只需2mL絮凝剂) ,絮体形成快,矾花大,泥少;体系温度对活性影响很小,且在酸性与碱性条件下,絮凝活性均很高     

活性污泥微生物群落结构及与环境因素响应关系分析

对已发表的62个来自国内外污废水处理设施中活性污泥的16S rRNA扩增子数据进行数据发掘和分析,旨在揭示不同进水性质、温度及处理工艺对应的污泥菌群结构特性.结果表明,活性污泥中整体有着较高的物种多样性和群落丰富度,不同活性污泥样品微生物群落结构有一定差异,样品中常见的优势菌属有Thauera、Nitrospira、Comamonas、Dechloromonas、Rhodoferax、Aquihabitans 和Acidovorax等.温度与Nitrospira、Aquihabitans、Terrimonas和Dechloromona等多种关键的脱氮微生物呈负相关,当温度低于15℃时,32座污水处理厂对TN和NH₄⁺-N的去除率仅有49.67%和63.19%.BOD₅/COD值越大的污水处理系统,Zoogloea、Arcobacter、Acidovorax和Acinetobacter等优势功能性菌属相对丰度也越高,污染物的去除率也越高.对于生活污水的处理,A²O工艺性能要优于OD、CAS和CMAS工艺,Comamonas、Rhodoferax、Nitrospira和Novosphingobium等多种功能性优势菌属的相对丰度要高于其它3类工艺.     

16S rRNA基因技术在环境科学领域中的应用

随着分子生物学的发展，16S rRNA基因技术被逐渐应用到环境科学领域中。目前在环境保护和治理中，该技术主要被用于鉴定污染物的生物降解菌和分析环境样品中的微生物群落多样性，由于它不必将微生物培养分离出来，也就避免了在培养过程中可能出现的微生物去失的情况。本文对16S rRNA基因技术及其在环境科学领域中的应用现状和发展作了一简要介绍，并对16S rRNA基因技术存在的不足进行了讨论。     

Quantification of anaerobic ammonium-oxidizing bacteria in enrichment cultures by quantitative competitive PCR

The anaerobic ammonium-oxidizing (ANAMMOX) bacteria were enriched from a sequencing batch biofilm reactor (SBBR). A quantitative competitive polymerase chain reaction (QC-PCR) system was successfully developed to detect and quantify ANAMMOX bacteria in environmental samples. For QC-PCR system, PCR primer sets targeting 16S ribosomal RNA genes of ANAMMOX bacteria were designed and used. The quantification range of this system was 4 orders of magnitude, from 103 to 106 copies per PCR, corresponding to the detection limit of 300 target copies per mL. A 312-bp internal standard was constructed, which showed very similar amplification e ciency with the target amxC fragment (349 bp) over 4 orders of magnitude (103–106). The linear regressions were obtained with R2 of 0.9824 for 103 copies, 0.9882 for 104 copies, 0.9857 for 105 copies and 0.9899 for 106 copies, respectively. Using this method, ANAMMOX bacteria were quantified in a shortcut nitrification/denitrification-anammox system which was set for piggery wastewater treatment.     

同时提取土壤微生物DNA和RNA方法的研究

获得高浓度、大片段、多样性程度高的土壤微生物总DNA是研究土壤微生物群落结构的分子生态学基础.研究采用PBS缓冲液洗涤土壤样品,结合SDS裂解微生物细胞的方法,同时提取分别添加小麦秸秆粉和油菜秸秆粉的两种土壤样晶的微生物DNA和RNA.对提取出的DNA和RNA进行酶切,基因组PCR和反转录PCR,实验结果表明该法提取的...     

SO2诱导驯化城市污水处理厂氧化沟微生物的多样性分析

对城市污水处理厂氧化沟采集的微生物用低浓度SO2诱导驯化6d以上可培养出脱SO2微生物种群,它们之间相互协同,共同行使着对溶于水中的SO2生化降解的生物学功能,对SO2的生化降解速率高达888mg·（L·h）^-1,1．5h水中的SO3^2-的降解效率〉85％．脱硫菌样品经DNA提取及16SrRNA基因片段的聚合酶链反...