Changes in Arthropod Assemblages along a Wide Gradient of Disturbance in Gabon

Abstract: Searching for indicator taxa representative of diverse assemblages, such as arthropods, is an important objective of many conservation studies. We evaluated the impacts of a wide gradient of disturbance in Gabon on a range of arthropod assemblages representing different feeding guilds. We examined 4 × 10⁵ arthropod individuals from which 21 focal taxa were separated into 1534 morphospecies. Replication included the understory of 3 sites in each of 4 different stages of forest succession and land use (i.e., habitats) after logging (old and young forests, savanna, and gardens). We used 3 complementary sampling methods to survey sites throughout the year. Overall differences in arthropod abundance and diversity were greatest between forest and open habitats, and cleared forest invaded by savanna had the lowest abundance and diversity. The magnitude of faunal differences was much smaller between old and young forests. When considered at this local scale, anthropogenic modification of habitats did not result in a monotonous decline of diversity because many herbivore pests and their associated predators and parasitoids were abundant and diverse in gardens, where plant productivity was kept artificially high year‐round through watering and crop rotation. We used a variety of response variables to measure the strength of correlations across survey locations among focal taxa. These could be ranked as follows in terms of decreasing number of significant correlations: species turnover > abundance > observed species richness > estimated species richness > percentage of site‐specific species. The number of significant correlations was generally low and apparently unrelated to taxonomy or guild structure. Our results emphasize the value of reporting species turnover in conservation studies, as opposed to simply measuring species richness, and that the search for indicator taxa is elusive in the tropics. One promising alternative might be to consider “predictor sets” of a small number of taxa representative of different functional groups, as identified in our study.     

Phylogenetic Comparative Methods Strengthen Evidence for Reduced Genetic Diversity among Endangered Tetrapods

Abstract: The fitness of species with little genetic diversity is expected to be affected by inbreeding and an inability to respond to environmental change. Conservation theory suggests that endangered species will generally demonstrate lower genetic diversity than taxa that are not threatened. This hypothesis has been challenged because the time frame of anthropogenic extinction may be too fast to expect genetic factors to significantly contribute. I conducted a meta‐analysis to examine how genetic diversity in 894 tetrapods correlates with extinction threat level. Because species are not evolutionarily independent, I used a phylogenetic regression framework to address this issue. Mean genetic diversity of tetrapods, as assessed by protein heterozygosity, was 29.7–31.5% lower on average in threatened species than in their nonthreatened relatives, a highly significant reduction. Within amphibians as diversity decreased extinction risk increased in phylogenetic models, but not in nonphylogenetic regressions. The effects of threatened status on diversity also remained significant after accounting for body size in mammals. These results support the hypothesis that genetic effects on population fitness are important in the extinction process.     

Conservation genomics of the endangered Burmese roofed turtle

The Burmese roofed turtle (Batagur trivittata) is one of the world's most endangered turtles. Only one wild population remains in Myanmar. There are thought to be 12 breeding turtles in the wild. Conservation efforts for the species have raised >700 captive turtles since 2002, predominantly from eggs collected in the wild. We collected tissue samples from 445 individuals (approximately 40% of the turtles’ remaining global population), applied double‐digest restriction‐site associated DNA sequencing (ddRAD‐Seq), and obtained approximately 1500 unlinked genome‐wide single nucleotide polymorphisms. Individuals fell into 5 distinct genetic clusters, 4 of which represented full‐sib families. We inferred a low effective population size (≤10 individuals) but did not detect signs of severe inbreeding, possibly because the population bottleneck occurred recently. Two groups of 30 individuals from the captive pool that were the most genetically diverse were reintroduced to the wild, leading to an increase in the number of fertile eggs (n = 27) in the wild. Another 25 individuals, selected based on the same criteria, were transferred to the Singapore Zoo as an assurance colony. Our study demonstrates that the research‐to‐application gap in conservation can be bridged through application of cutting‐edge genomic methods.     

Identifying and Managing Threatened Invertebrates through Assessment of Coextinction Risk

Abstract: Invertebrates with specific host species may have a high probability of extinction when their hosts have a high probability of extinction. Some of these invertebrates are more likely to go extinct than their hosts, and under some circumstances, specific actions to conserve the host may be detrimental to the invertebrate. A critical constraint to identifying such invertebrates is uncertainty about their level of host specificity. We used two host‐breadth models that explicitly incorporated uncertainty in the host specificity of an invertebrate species. We devised a decision protocol to identify actions that may increase the probability of persistence of a given dependent species. The protocol included estimates from the host‐breadth models and decision nodes to identify cothreatened species. We applied the models and protocol to data on 1055 insects (186 species) associated with 2 threatened (as designated by the Australian Government) plant species and 19 plant species that are not threatened to determine whether any insect herbivores have the potential to become extinct if the plant becomes extinct. According to the host‐breadth models, 18 species of insect had high host specificity to the threatened plant species. From these 18 insects, the decision protocol highlighted 6 species that had a high probability of extinction if their hosts were to become extinct (3% of all insects examined). The models and decision protocol have added objectivity and rigor to the process of deciding which dependent invertebrates require conservation action, particularly when dealing with largely unknown and speciose faunas.     

Extirpation of Macroalgae (Sargassum spp.) on the Subtropical East Australian Coast

Abstract: Populations of large brown algae of the Laminariales and Fucales (Phaeophyta) have declined or been extirpated from many locations on temperate coasts worldwide. We conducted field surveys and a literature review, and examined herbarium specimens, through which we discovered previously unreported extirpations of large brown algal species from a tropical and subtropical coastline. Sargassum amaliae, S. aquifolium, S. carpophyllum, S. polycystum, and S. spinifex were common habitat‐forming macroalgae that supported diverse assemblages of invertebrates and smaller algae before urbanization began in 1970 along the 45‐km length of Sunshine Coast in Queensland, Australia. Causes of these extirpations are not known, but are consistent with losses of other large brown algal species from coastal areas undergoing urbanization or eutrophication. Sargassum spp. do not have the characteristics thought to protect marine species from extinction (large geographical ranges, occurrence on many different substrata, long‐distance dispersal). Some local Sargassum spp. are endemic to eastern Australia. Abundance of Sargassum is limited by suitable substrata on the sandy southern Queensland coast (370 km). These substrata are 12 rocky headlands separated by long (5–105 km) sandy beaches. Most multicellular propagules (the only motile stage in Sargassum) settle within 1–3 m of parental thalli, which restricts long‐distance dispersal needed to maintain connectivity among populations and to recolonize areas of the headlands from which populations have been extirpated. Local Sargassum spp. could be categorized as data deficient by the International Union for Conservation of Nature (IUCN), but the IUCN vulnerable category is more accurate given extirpations, limited habitat, and the lack of connectivity among populations.     

Biodiversity Conservation in Agricultural Landscapes: Challenges and Opportunities of Coffee Agroforests in the Western Ghats,India

Abstract: The new approaches advocated by the conservation community to integrate conservation and livelihood development now explicitly address landscape mosaics composed of agricultural and forested land rather than only protected areas and largely intact forests. We refer specifically to a call by Harvey et al. (2008) to develop a new approach based on six strategies to integrate biodiversity conservation with sustainable livelihoods in Mesoamerican landscape mosaics. We examined the applicability of this proposal to the coffee agroforests of the Western Ghats, India. Of the six strategies, only one directly addresses livelihood conditions. Their approach has a clear emphasis on conservation and, as currently formulated risks repeating the failures of past integrated conservation and development projects. It fails to place the aspirations of farmers at the core of the agenda. Thus, although we acknowledge and share the broad vision and many of the ideas proposed by this approach, we urge more balanced priority setting by emphasizing people as much as biodiversity through a careful consideration of local livelihood needs and aspirations.     

Birds as Suppliers of Seed Dispersal in Temperate Ecosystems: Conservation Guidelines from Real‐World Landscapes

Abstract: Seed dispersal by animals is considered a pivotal ecosystem function that drives plant‐community dynamics in natural habitats and vegetation recovery in human‐altered landscapes. Nevertheless, there is a lack of suitable ecological knowledge to develop basic conservation and management guidelines for this ecosystem service. Essential questions, such as how well the abundance of frugivorous animals predicts seeding function in different ecosystems and how anthropogenic landscape heterogeneity conditions the role of dispersers, remain poorly answered. In three temperate ecosystems, we studied seed dispersal by frugivorous birds in landscape mosaics shaped by human disturbance. By applying a standardized design across systems, we related the frequency of occurrence of bird‐dispersed seeds throughout the landscape to the abundance of birds, the habitat features, and the abundance of fleshy fruits. Abundance of frugivorous birds in itself predicted the occurrence of dispersed seeds throughout the landscape in all ecosystems studied. Even those landscape patches impoverished due to anthropogenic disturbance received some dispersed seeds when visited intensively by birds. Nonetheless, human‐caused landscape degradation largely affected seed‐deposition patterns by decreasing cover of woody vegetation or availability of fruit resources that attracted birds and promoted seed dispersal. The relative role of woody cover and fruit availability in seed dispersal by birds differed among ecosystems. Our results suggest that to manage seed dispersal for temperate ecosystem preservation or restoration one should consider abundance of frugivorous birds as a surrogate of landscape‐scale seed dispersal and an indicator of patch quality for the dispersal function; woody cover and fruit resource availability as key landscape features that drive seedfall patterns; and birds as mobile links that connect landscape patches of different degrees of degradation and habitat quality via seed deposition.     

Equity trade‐offs in conservation decision making

Conservation decisions increasingly involve multiple environmental and social objectives, which result in complex decision contexts with high potential for trade‐offs. Improving social equity is one such objective that is often considered an enabler of successful outcomes and a virtuous ideal in itself. Despite its idealized importance in conservation policy, social equity is often highly simplified or ill‐defined and is applied uncritically. What constitutes equitable outcomes and processes is highly normative and subject to ethical deliberation. Different ethical frameworks may lead to different conceptions of equity through alternative perspectives of what is good or right. This can lead to different and potentially conflicting equity objectives in practice. We promote a more transparent, nuanced, and pluralistic conceptualization of equity in conservation decision making that particularly recognizes where multidimensional equity objectives may conflict. To help identify and mitigate ethical conflicts and avoid cases of good intentions producing bad outcomes, we encourage a more analytical incorporation of equity into conservation decision making particularly during mechanistic integration of equity objectives. We recommend that in conservation planning motivations and objectives for equity be made explicit within the problem context, methods used to incorporate equity objectives be applied with respect to stated objectives, and, should objectives dictate, evaluation of equity outcomes and adaptation of strategies be employed during policy implementation.