Automated detection of frog calls and choruses by pulse repetition rate

Anurans (frogs and toads) are among the most globally threatened taxonomic groups. Successful conservation of anurans will rely on improved data on the status and changes in local populations, particularly for rare and threatened species. Automated sensors, such as acoustic recorders, have the potential to provide such data by massively increasing the spatial and temporal scale of population sampling efforts. Analyzing such data sets will require robust and efficient tools that can automatically identify the presence of a species in audio recordings. Like bats and birds, many anuran species produce distinct vocalizations that can be captured by autonomous acoustic recorders and represent excellent candidates for automated recognition. However, in contrast to birds and bats, effective automated acoustic recognition tools for anurans are not yet widely available. An effective automated call-recognition method for anurans must be robust to the challenges of real-world field data and should not require extensive labeled data sets. We devised a vocalization identification tool that classifies anuran vocalizations in audio recordings based on their periodic structure: the repeat interval-based bioacoustic identification tool (RIBBIT). We applied RIBBIT to field recordings to study the boreal chorus frog (Pseudacris maculata) of temperate North American grasslands and the critically endangered variable harlequin frog (Atelopus varius) of tropical Central American rainforests. The tool accurately identified boreal chorus frogs, even when they vocalized in heavily overlapping choruses and identified variable harlequin frog vocalizations at a field site where it had been very rarely encountered in visual surveys. Using a few simple parameters, RIBBIT can detect any vocalization with a periodic structure, including those of many anurans, insects, birds, and mammals. We provide open-source implementations of RIBBIT in Python and R to support its use for other taxa and communities.     

Combined effects of life-history traits and human impact on extinction risk of freshwater megafauna

Megafauna species are intrinsically vulnerable to human impact. Freshwater megafauna (i.e., freshwater animals ≥30 kg, including fishes, mammals, reptiles, and amphibians) are subject to intensive and increasing threats. Thirty-four species are listed as critically endangered on the International Union for Conservation of Nature (IUCN). Red List of Threatened Species, the assessments for which are an important basis for conservation actions but remain incomplete for 49 (24%) freshwater megafauna species. Consequently, the window of opportunity for protecting these species could be missed. Identifying the factors that predispose freshwater megafauna to extinction can help predict their extinction risk and facilitate more effective and proactive conservation actions. Thus, we collated 8 life-history traits for 206 freshwater megafauna species. We used generalized linear mixed models to examine the relationships between extinction risk based on the IUCN Red List categories and the combined effect of multiple traits, as well as the effect of human impact on these relationships for 157 classified species. The most parsimonious model included human impact and traits related to species’ recovery potential including life span, age at maturity, and fecundity. Applying the most parsimonious model to 49 unclassified species predicted that 17 of them are threatened. Accounting for model predictions together with IUCN Red List assessments, 50% of all freshwater megafauna species are considered threatened. The Amazon and Yangtze basins emerged as global diversity hotspots of threatened freshwater megafauna, in addition to existing hotspots, including the Ganges-Brahmaputra and Mekong basins and the Caspian Sea region. Assessment and monitoring of those species predicted to be threatened are needed, especially in the Amazon and Yangtze basins. Investigation of life-history traits and trends in population and distribution, regulation of overexploitation, maintaining river connectivity, implementing protected areas focusing on freshwater ecosystems, and integrated basin management are required to protect threatened freshwater megafauna in diversity hotspots.     

分层型水库夏季水质对极端厄尔尼诺事件的响应

为探究极端厄尔尼诺事件对分层型水库夏季水质的影响,分别于正常年(2012年)和厄尔尼诺年(2015年)的5~8月对枣庄周村水库主库区和入库径流的物理和化学指标进行了监测.结果表明,周村水库正常年夏季降雨量明显高于厄尔尼诺年夏季;正常年夏季水位由124.26 m上升至127.14 m,恒温层厚度增加3.1 m;而厄尔尼诺年夏季水位由121.65 m下降至119.46 m,恒温层厚度减少3.2 m.周村水库入库径流属表层流,其营养盐浓度明显高于库区变温层.正常年夏季外源营养盐的汇入导致库区变温层总氮由1.00 mg·L~(-1)升至2.60 mg·L~(-1),硝态氮由0.19 mg·L~(-1)升至1.28 mg·L~(-1),总磷由0.023mg·L~(-1)升至0.088 mg·L~(-1),而厄尔尼诺年夏季库区变温层营养盐浓度变化不大.厄尔尼诺年夏季恒温层水体还原性污染物浓度明显高于正常年同期水平,其中铁、锰、氨氮和硫化物浓度的最大值分别为0.38、1.36、2.36和1.67 mg·L~(-1),均超过地表水Ⅲ类水质标准.极端厄尔尼诺事件对周村水库夏季变温层水体营养盐浓度和恒温层水体污染物浓度均有较大的影响.     

Targeted gene flow and rapid adaptation in an endangered marsupial

Targeted gene flow is an emerging conservation strategy. It involves translocating individuals with favorable genes to areas where they will have a conservation benefit. The applications for targeted gene flow are wide-ranging but include preadapting native species to the arrival of invasive species. The endangered carnivorous marsupial, the northern quoll (Dasyurus hallucatus), has declined rapidly since the introduction of the cane toad (Rhinella marina), which fatally poisons quolls that attack them. There are, however, a few remaining toad-invaded quoll populations in which the quolls survive because they know not to eat cane toads. It is this toad-smart behavior we hope to promote through targeted gene flow. For targeted gene flow to be feasible, however, toad-smart behavior must have a genetic basis. To assess this, we used a common garden experiment, comparing offspring from toad-exposed and toad-naïve parents raised in identical environments, to determine whether toad-smart behavior is heritable. Offspring from toad-exposed populations were substantially less likely to eat toads than those with toad-naïve parents. Hybrid offspring showed similar responses to quolls with 2 toad-exposed parents, indicating the trait may be dominant. Together, these results suggest a heritable trait and rapid adaptive response in a small number of toad-exposed populations. Although questions remain about outbreeding depression, our results are encouraging for targeted gene flow. It should be possible to introduce toad-smart behavior into soon to be affected quoll populations.     

Correcting common misconceptions to inspire conservation action in urban environments

Despite repeated calls to action, proposals for urban conservation are often met with surprise or scepticism. There remains a pervasive narrative in policy, practice, and the public psyche that urban environments, although useful for engaging people with nature or providing ecosystem services, are of little conservation value. We argue that the tendency to overlook the conservation value of urban environments stems from misconceptions about the ability of native species to persist within cities and towns and that this, in turn, hinders effective conservation action. However, recent scientific evidence shows that these assumptions do not always hold. Although it is generally true that increasing the size, quality, and connectivity of habitat patches will improve the probability that a species can persist, the inverse is not that small, degraded, or fragmented habitats found in urban environments are worthless. In light of these findings we propose updated messages that guide and inspire researchers, practitioners, and decision makers to undertake conservation action in urban environments: consider small spaces, recognize unconventional habitats, test creative solutions, and use science to minimize the impacts of future urban development.     

Myths and assumptions about human-wildlife conflict and coexistence

Recent extinctions often resulted from humans retaliating against wildlife that threatened people's interests or were perceived to threaten current or future interests. Today's subfield of human-wildlife conflict and coexistence (HWCC) grew out of an original anthropocentric concern with such real or perceived threats and then, starting in the mid-1990s, with protecting valued species from people. Recent work in ethics and law has shifted priorities toward coexistence between people and wild animals. To spur scientific progress and more effective practice, we examined 4 widespread assumptions about HWCC that need to be tested rigorously: scientists are neutral and objective about HWCC; current participatory, consensus-based decisions provide just and fair means to overcome challenges in HWCC; wildlife threats to human interests are getting worse; and wildlife damage to human interests is additive to other sources of damage. The first 2 assumptions are clearly testable, but if they are entangled can become a wicked problem and may need debunking as myths if they cannot be disentangled. Some assumptions have seldom or never been tested and those that have been tested appear dubious, yet the use of the assumptions continues in the practice and scholarship of HWCC. We call for tests of assumptions and debunking of myths in the scholarship of HWCC. Adherence to the principles of scientific integrity and application of standards of evidence can help advance our call. We also call for practitioners and interest groups to improve the constitutive process prior to decision making about wildlife. We predict these steps will hasten scientific progress toward evidence-based interventions and improve the fairness, ethics, and legality of coexistence strategies.     

El Niño影响下春季南海北部表层水体CO2分压变化

采用走航连续观测系统分别在2011年5月和2015年5月对南海北部表层水体温度、盐度、溶解氧、叶绿素a和pCO_2进行了现场观测.在El Nio影响下,2015年5月华南地区及广东省降雨量偏多,大量冲淡水入海,南海北部冲淡水区域海表盐度显著降低,2015年5月冲淡水区域海表盐度平均值为(28.05±6.18),低于2011年5月的海表盐度平均值(29.65±2.58),同时实测冲淡水区域海表温度平均升高约2.10℃.冲淡水携带的营养物质和适度升高的海表温度共同促进了冲淡水区域浮游植物的繁殖.浮游植物光合作用不断地将海水中的游离CO2转化为有机碳,同时释放出氧气,使得水体pCO_2降低,2015年5月冲淡水区域pCO_2平均值为(286±95)μatm,低于2011年5月的pCO_2平均值(300±42)μatm.2015年5月实测获得离岸海域pCO_2平均值为(421±9)μatm,高于2011年5月pCO_2平均值(386±13)μatm,二者差值为35μatm,海表温度是离岸海域pCO_2的主要影响因子,2015年5月El Nio期间离岸海域SST升高1.96℃.El Nio影响下冲淡水区域的碳汇作用增加,离岸海域的碳源作用增强,冲淡水区域碳汇增加与离岸海域碳源增强基本抵消,2015年5月南海北部整体仍是CO_2弱汇区,约为-0.40 mmol·m~(-2)·d~(-1),与2011年5月通量值-0.58 mmol·m~(-2)·d~(-1)差别不明显.     

Artificial radionuclides in the atmosphere over Lithuania

Measurements of airborne radioactive aerosol concentration were carried out on the basis of 1-3 days samples after the Chernobyl disaster and during the period of 1992-2003. Transport of "hot" particles of different composition resulted in the high activity concentrations of (137)Cs, (238)Pu, (239,240)Pu and (241)Am in the atmosphere in Vilnius at the end of April 1986. The (240)Pu/(239)Pu atom ratio showed clear evidence of non-global plutonium originating from the Chernobyl accident in the atmosphere over Lithuania. The (240)Pu/(239)Pu atom ratio ranged from 0.14 to 0.40 in monthly samples in Vilnius in 1995-2003. An increase in activity concentration of (137)Cs by a factor of 100 (up to 300 microBq/m(3)) was found following forest fires in the Ukraine and Belarus. However, no transport of the Chernobyl plutonium was observed and the (240)Pu/(239)Pu atom ratio in samples collected during the forest fires was found to be 0.229 and 0.185, respectively. The exponential decrease in the (240)Pu/(239)Pu atom ratio from 0.30 to 0.19 (mean values) was observed in 1995-2003.     

Long-Term Relationships Between Ocean Variability and Water Resources in Northeastern Utah1

Tingstad, Abbie H. and Glen M. MacDonald, 2010. Long-Term Relationships Between Ocean Variability and Water Resources in Northeastern Utah. Journal of the American Water Resources Association (JAWRA) 46(5):987-1002. DOI: 10.1111/j.1752-1688.2010.00471.x Abstract: The Uinta Mountains in the northwestern Colorado River Basin are an important source of water for Utah and the western United States. This article examines 20th Century hydrology in the Uinta Mountains region in the context of the previous four to eight centuries as well as possible relationships with Pacific and Atlantic Ocean variability using new tree-ring based reconstructions for streamflow and snowpack. The 20th Century appears to have been unusually wet compared with previous centuries. Relationships between hydrology in the region and the El Niño-Southern Oscillation (ENSO), Pacific Decadal Oscillation (PDO), and Atlantic Multidecadal Oscillation (AMO) are largely insignificant in instrumental datasets but may have been stronger, although inconsistent, over the longer time spans represented by the paleoclimate records. Impacts of individual modes of sea surface temperature variability may sometimes be enhanced by periods when climate forcing by ENSO, PDO, and/or AMO coincide. Such episodes are associated with deviations from mean hydrology as high as +14% and as low as −18%. The 20th Century could be a misleading benchmark to base water resource estimates upon and flexible water management strategies are necessary to take into account the large range of natural variability observed in the longer-term hydroclimatology as well as the challenges to predictability due to the apparently complex and inconsistent influence of ocean-driven variability.     

Savviness of prey to introduced predators

The prey naivety hypothesis posits that prey are vulnerable to introduced predators because many generations in slow gradual coevolution are needed for appropriate avoidance responses to develop. It predicts that prey will be more responsive to native than introduced predators and less responsive to introduced predators that differ substantially from native predators and from those newly established. To test these predictions, we conducted a global meta-analysis of studies that measured the wariness responses of small mammals to the scent of sympatric mammalian mesopredators. We identified 26 studies that met our selection criteria. These studies comprised 134 experiments reporting on the responses of 36 small mammal species to the scent of six introduced mesopredators and 12 native mesopredators. For each introduced mesopredator, we measured their phylogenetic and functional distance to local native mesopredators and the number of years sympatric with their prey. We used predator and prey body mass as a measure of predation risk. Globally, small mammals were similarly wary of the scent of native and introduced mesopredators; phylogenetic and functional distance between introduced mesopredators and closest native mesopredators had no effect on wariness; and wariness was unrelated to the number of prey generations, or years, since first contact with introduced mesopredators. Small mammal wariness was associated with predator-prey body mass ratio, regardless of the nativity. The one thing animals do not seem to recognize is whether their predators are native.