Bioreduction of hexavalent chromium by Exiguobacterium indicum strain MW1 isolated from marine water of Paradip Port,Odisha, India

Hexavalent chromium-tolerant (1500?mg/L) bacterium MW1 was isolated from harbour water of Paradip Port and evaluated for Cr(VI) reduction potential. The isolate was identified as Exiguobacterium indicum by biochemical and 16S rRNA gene sequence methods. Salt tolerance of the bacterium was evaluated in a wide range of NaCl concentrations (0.5–13%, w/v). The Cr(VI) reduction of the strain was evaluated and optimised with varied Cr(VI) concentrations (100–1000?mg/L), pH (5.0–9.0), temperature (30–40°C) and shaking velocity (100–150?rpm) in two different minimal media (M9 and Acetate). Under optimised conditions, after 192?h of incubation nearly 92%, 50% and 46% reduction in the M9 minimal medium and 91%, 47% and 40% reduction in the acetate minimal medium were observed for 100, 500 and 1000?mg/L of Cr(VI), respectively. The exponential rate equation for Cr(VI) reduction yielded higher rate constant value, that is, 1.27?×?10^?2?h^?1 (M9) and 1.17?×?10^?2?h^?1 (Acetate) in case of 100?mg/L and became lower for 500 and 1000?mg/L Cr(VI) concentrations. Further, the association of bacterial cells with reduced product was ascertained by Fourier transform infrared spectrometer, UV–Vis–DRS and field-emission scanning electron microscope–energy-dispersive X-ray analyses. The above study suggests that the higher reducing ability of the marine bacterium E. indicum MW1 will be suitable for Cr(VI) reduction from saline effluents.     

融合菌-活性污泥联合曝气吸附处理重金属铬

研究了融合菌RHJ-004与活性污泥联合曝气处理含铬废水的生物吸附性能。结果表明,融合菌RHJ-004与活性污泥联合曝气对铬具有良好的处理效果,投加10g/L菌体、6g/L污泥,处理50mg/L的铬液,还原率可达83.26%,去除率达72.04%。该吸附剂对处理酸性含铬废水具有很大的潜力,在pH=1￣5时,还原率均>80%,去除率均>70%;溶解氧是影响该吸附过程的一个重要参数,当DO=2￣4mg/L时,生物吸附效果较好,还原率达到75%以上,去除率也超过65%;融合菌RHJ-004与活性污泥对六价铬的联合吸附可用Langmuir模型和Freundlich模型描述,但Freundlich模型的拟合效果更好。     

典型氢氧化细菌固碳特性种间差异及胞外有机物对固碳过程影响

化能自养细菌对全球CO₂固定具有重要的意义.研究了4种典型氢氧化细菌（HOB,分别是Alcaligenes hydrogenophilus DSM 2625、Pelomonas saccharophila DSM 654、Variovorax paradoxus DSM 30034和Acidovorax facilis DSM 649）的固碳特性及其种间差异性,并探究了胞外游离有机碳（EFOC）对不同种类HOB固碳效率差异性的影响.结果表明：①不同HOB自养培养过程中表观固碳量随时间呈显著差异性,其中,DSM 2625生长速度较快,其平均固碳量分别是DSM 654、DSM 649和DSM 30034的6.30、8.76和7.02倍.②不同HOB之间cbbL基因转录量与 表观固碳量的相关系数为0.980 （p<0.05）,cbbL基因转录量是造成不同菌种之间表观固碳效率差异的关键因素.③HOB细胞蛋白质含量与cbbL基因丰度和转录量之间也存在显著正相关,相关系数分别为0.999（p<0.01）和0.976（p<0.05）,即化能自养细菌CO₂同化途径所固定的有机碳进一步参与细胞蛋白质的合成,进而影响其生长速度和表观固碳效率.④HOB在自养培养过程中产生的EFOC对cbbL基因转录效率产生反馈抑制作用,且不同HOB之间,EFOC/TOC比例越低,表观固碳效率越高.     

连续施用发酵猪粪对土壤中四环素抗性基因数量的影响

为了研究连续施用发酵猪粪之后,土壤中抗性基因的数量以及发酵猪粪的施用量对土壤抗性基因的影响,采用实时荧光定量PCR方法,对稻麦轮作模式下连续6年施用4.5t/hm2和9.0t/hm2发酵猪粪的土壤进行了四环素抗性基因(TRGs)的检测和定量分析.在施用发酵猪粪的土壤中能够检测到9种TRGs.施用发酵猪粪显著增加了土壤中tet G、tet L、tet B(P)、tet O、tet W的绝对数量,其中tet B(P)、tet W、tet O的绝对数量受到了施肥用量的影响;而tet Z、tet C和tet S的绝对数量则没有受到施肥的影响.上述8种TRGs在同一施肥处理的0~5cm、5~10cm以及10~20cm土壤中的相对丰度分布均无显著差异.发酵猪粪的施用也显著增加了tet G、tet L、tet B(P)和tet O的相对丰度,但是仅有tet O的相对丰度受到了施肥用量的显著影响.本研究表明,在稻麦轮作模式下,农田土壤中的TRGs数量会受到发酵猪粪中残留TRGs的影响,连续施用该粪肥会显著增加土壤中tet G、tet L、tet B(P)和tet O的绝对数量和相对丰度.因此,需要优化畜禽粪堆肥发酵工艺,以减少抗性基因在粪肥中的残留.     

南海水域不同深度非光合微生物的固碳潜能及其对不同电子供体的响应

通过对南海水域多个区域不同深度的海水分别以H2、Na2S2O3、Na NO2为电子供体经过一定时间的驯化培养后,测定其中非光合微生物的固碳潜力,并统计南海水域不同深度非光合微生物在不同电子供体条件下固碳潜力的差异性,最后结合不同深度海水的主要固碳基因丰度差异,分析南海水域不同深度海洋非光合微生物在不同电子供体条件下固碳潜能差异的原因.结果发现以Na NO2为电子供体时,海洋非光合微生物固碳能力普遍较低,各深度之间没有显著差异;以H2为电子供体时,表层海水中的非光合微生物的固碳潜力显著高于深层海水中的;而以Na2S2O3为电子供体时,深层海水中的非光合微生物的固碳潜力显著高于表层海水中的.基因分析结果表明,固碳基因cbb L在表层海水中的丰度高于深层海水,而cbb M基因在深层海水中的丰度高于表层海水.硫细菌大多以拥有cbb M基因为主,而氢细菌大多以拥有cbb L基因为主.因此不同海洋深度非光合微生物对不同电子供体响应的差异性可能和优势菌群结构的差异有关.海洋表层和深层溶解氧、无机碳含量的差异是导致菌群结构差异,乃至固碳潜力差异的重要原因.     

Telomere length in workers was effected by omethoate exposure and interaction between smoking and p21 polymorphisms

Abstract

Omethoate is an organophosphorus pesticide that poses a major health hazard, especially DNA damage. The purpose of this study was to investigate the factors affecting telomere length in workers exposed to omethoate by analyzing the interaction between cell cycle gene polymorphism and environmental factors. The exposure group consisted of 118 workers exposed to omethoate for 8–10?years, the control group comprised 115 healthy people without occupational toxicant exposure history. The telomere length of genomic DNA from peripheral blood leucocyte was determined with real-time PCR. Polymerase chain reaction and restriction fragment length polymorphism was used to detect the polymorphisms in p53, p21 and MDM2 gene. The telomere length in the (CA?+?AA) genotypes for p21 rs1801270 polymorphism was longer than that in the CC genotype in control group (P?=?0.015). The generalized linear model analysis indicated the interaction of the p21 rs1801270 polymorphic (CA?+?AA) genotypes and smoking has a significant effect on telomere length (β = ?0.258, P?=?0.085). The prolongation of telomere length in omethoate-exposed workers was associated with genotypes (CA?+?AA) of p21 rs1801270, and interactions of (CA?+?AA) genotypes and smoking factor.     

超强静磁场对染料脱色菌Escheriehia coli的acpD基因的影响

将大肠杆菌E.coli ATCC8739置于12.0 T超强静磁场(ultra-strong static magnetic field,SMF)中进行处理,获得了磁场处理0.5、1、2、4和8 h的菌株E.coli-SMFn(n=0.5、1、2、4、8)。在37℃、pH 7、静置的条件下,菌株对偶氮染料AR14(I.C.Acid Red 14)的脱色结果指出,当反应进行到4、6和8 h时,E.coli-SMF8的脱色效率分别为18%、55%和96%,远高于E.coli ATCC8739的3%、19%和50%,表明SMF作用显著地增强了菌株的脱色效率。基因组DNA提取、PCR扩增、分子克隆以及基因测序的实验结果进一步表明,全部6例E.coli ATCC8739菌株的偶氮还原酶基因(acpD)序列均与GenBank中报道的完全一致;而E.coli-SMF8菌株的acpD-SMF8核酸序列中缺失了第99位的胞嘧啶。该缺失突变不仅使acpD-SMF8的核酸序列与acpD的存在显著不同,同时得到了具新活性中心的偶氮还原酶AzoR-SMF8。这个新的活性中心具有更强的黄素(FMN)结合能力,因此使该酶与偶氮染料的亲和力大大增加,促进了脱色效率的提高。     

湖南石门雄黄矿区矿样中的砷氧化细菌的分离及鉴定

绿色的生物学方法处理含砷废水,对于缓解工业发展所带来砷污染问题,提高居民健康生活质量具有重要意义。以湖南石门雄黄矿区的尾矿池积水（SY）、地下400 m处的矿坑水（NY）和尾矿池底泥表层（XY）3个样本为研究对象,利用细菌富集和多次传代的方法,从这3个环境样本中获得可氧化三价砷的3个菌群。在砷质量浓度为l~5 g·L-1的培养基中分别检测上述3个菌群的耐受能力,发现在砷质量浓度高达5 g·L-1的条件下,上述菌群均能在2~3 d内达到109 cells·mL-1。利用上述菌群处理l g·L-1亚砷酸钠溶液,SY、XY和NY菌群可分别在25、20和35 h内将三价砷完全氧化,并且使溶液中的总砷质量浓度降低66.7%。进一步对3个菌群进行多次平板分离,利用五价砷和硝酸银的颜色反应,获得11株可氧化三价砷的目的菌株。对这些菌株16S rDNA进行NCBI的BLASTN序列比对发现,菌株SMY24、SMY33、SMY22、SMY32、SMY21和SMY31均属于假单胞菌属（Pseudomonas）,菌株SMY104属于不动杆菌属（Acinetobacter）,菌株SMY17、SMY25、SMY9和SMY1在所有的已知序列中,最大的相似率只有91%,最小的相似率为76%,且都是未曾报道纯培养的细菌。对这些菌株三价砷氧化能力进行测定发现,其中菌株SMY104和SMY21在20 h内能将三价砷几乎完全氧化。通过对这些菌株三价砷氧化酶基因进行初步检测,发现了多个菌株具有三价砷氧化酶基因（AoxB）。     

Cloning and expression analysis of geosmin synthase gene from Aphanizomenon gracile北大核心CSCD

Geosmin is a secondary metabolite responsible for earthy odors. The occurrence of geosmin has great impact on the quality of water environment. The gene essential for geosmin biosynthesis have been identified in several species. But little is known about the mechanism of geosmin synthesis in Aphanizomenon gracile. This study attempted to clone the gene involved in geosmin biosynthesis of Aphanizomenon gracile a nd a nalyze t he geosmin production u nder d ifferent e nvironments. T he high-efficiency thermal asymmetric interlaced PCR (hiTAIL-PCR) was used to amplify the full-length of geosmin synthase gene from Aphanizomenon gracile (WH-1). Real time PCR (RT-PCR) was applied to quantify the geosmin production in different light and temperature. As a result, geo, a geosmin synthase gene from Aphanizomenon gracile (WH-1) was cloned by hiTAIL-PCR. The full-length open reading frame (ORF) of geo was 2 262 bp, coding for a protein of 753 amino acids. Meanwhile, WH-1 was treated with different environment conditions and mRNA expression levels of geo were quantified by RT-PCR. It was found that low temperature (15 °C), high light intensity (35 μmol m-2 s-1) and continuous light illumination were beneficial to the expression of geo. The successful amplification of geosmin synthase gene verified that hiTAIL-PCR is an effective and simple procedure of low cost. The result provides fundamental knowledge on the monitoring and prevention for odorants.     

Interspecific and intraspecific identification of Dendrobium based on the psbAtrnH intergenic region sequences and the 5S rRNA gene spacer sequences北大核心CSCD

This research aimed to investigate the interspecific and intraspecific identification of Dendrobium by using the multi-locus method so as to provide a molecular basis for Dendrobium identification through the combination of chloroplast psbA-trnH intergenic region sequences and ribosome 5S rRNA gene spacer sequences. PCR direct sequencing was applied to detect the chloroplast psbA-trnH intergenic region sequences as well as the ribosome 5S rRNA gene spacer sequences of 12 Dendrobium species, while the psbA-trnH intergenic region sequences of Dendrobium denneanum dq-2 variety and dq- 5line were cloned and sequenced for single nucleotide polymorphism (SNP) analyzing. The sequences were analyzed by the software Sequencher4.14, Bioedit7.0, MEGA5.2 and Dansp5.0; the interspecific and intraspecific Kimara-2-Parameter(K2P) distances were also calculated. The phylogenetic tree (using Neighbor joining method) was constructed with Bulbophyllum odoratissimum and Bletilla striata as outgroup. The results showed an average length of chloroplast psbA-trnH gene sequences in Dendrobium as 742.3 bp, with 72 variable sites, including 33 information sites; the average length of the ribosome 5S rRNA gene spacer sequences in Dendrobium was 336.4 bp, with 213 variable sites including 139 information sites. Using psbAtrnH intergenic region sequences in combination with ribosome 5S rRNA gene spacer sequences can not only identify D. denneanum, D. hancockil, D. thysiflorum, D. devonianum, D. moniliforme, D. chrysotoxum, D. officinale, D. heterocarpum and D. nobile, but also differentiate D. officinale from different geographical populations, and distinguish the dq-2 variety and dq 5line with SNP in the multi locus of D. denneanum.