Mine-drainage treatment wetland as habitat for herptofaunal wildlife

Land reclamation techniques that incorporate habitat features for herptofaunal wildlife have received little attention. We assessed the suitability of a wetland, constructed for the treatment of mine-water drainage, for supporting herptofaunal wildlife from 1988 through 1990 using diurnal and nocturnal surveys. Natural wetlands within the surrounding watershed were also monitored for comparison. The treatment wetland supported the greatest abundance and species richness of herptofauna among the sites surveyed. Abundance was a function of the frog density, particularly green frogs (Rana clamitans) and pickerel frogs (R. palustris), while species richness was due to the number of snake species found. The rich mix of snake species present at the treatment wetland was believed due to a combination of an abundant frog prey base and an amply supply of den sites in rock debris left behind from earlier surface-mining activities. Nocturnal surveys of breeding male frogs demonstrated highest breeding activity at the treatment wetland, particularly for spring peepers (Hyla crucifer). Whole-body assays of green frog and bullfrog (R. catesbeiana) tissues showed no differences among sites in uptake of iron, aluminum, and zinc; managanese levels in samples from the treatment wetland were significantly lower than those from natural wetlands. These results suggest that wetlands established for water quality improvement can provide habitat for reptiles and amphibians, with the species composition dependent on the construction design, the proximity to source populations, and the degree of acidity and heavy-metal concentrations in drainage waters.     

复合养殖系统中浮游动物种类丰度及其影响因素

利用人工湿地和养殖塘构建了复合养殖系统,通过设置不同塘间水质差异,调查了斑点叉尾鮰鱼鱼种培育段和成鱼养殖段不同梯度下的浮游动物种类丰度,并探讨了种类丰度与环境因子的关系.结果表明,2养殖阶段的循环塘中,轮虫的种类丰度随养殖密度的增加而升高,浮游甲壳动物随养殖密度的增加而降低.成鱼养殖阶段对照塘中轮虫的种类丰度高于循环塘P1、P2;枝角类和桡足类的丰度则低于P1、P2;高养殖密度塘P3中,3种形态浮游动物种类丰度均低于对照塘.15种环境因子的主成分分析以及种类丰度与环境因子的冗余度分析结果表明,影响浮游动物种类丰度的主要环境因素为水体的营养状态,水体的物理特征对种类丰度的影响较小.     

Estimating the complexity of bird song by using capture-recapture approaches from community ecology

Repertoire size, the number of unique song or syllable types in the repertoire, is a widely used measure of song complexity in birds, but it is difficult to calculate this exactly in species with large repertoires. A new method of repertoire size estimation applies species richness estimation procedures from community ecology, but such capture-recapture approaches have not been much tested. Here, we establish standardized sampling schemes and estimation procedures using capture-recapture models for syllable repertoires from 18 bird species, and suggest how these may be used to tackle problems of repertoire estimation. Different models, with different assumptions regarding the heterogeneity of the use of syllable types, performed best for different species with different song organizations. For most species, models assuming heterogeneous probability of occurrence of syllables (so-called detection probability) were selected due to the presence of both rare and frequent syllables. Capture-recapture estimates of syllable repertoire size from our small sample did not differ significantly from previous estimates using larger samples of count data. However, the enumeration of syllables in 15 songs yielded significantly lower estimates than previous reports. Hence, heterogeneity in detection probability of syllables should be addressed when estimating repertoire size. This is neglected using simple enumeration procedures, but is taken into account when repertoire size is estimated by appropriate capture-recapture models adjusted for species-specific song organization characteristics. We suggest that such approaches, in combination with standardized sampling, should be applied in species with potentially large repertoire size. On the other hand, in species with small repertoire size and homogenous syllable usage, enumerations may be satisfactory. Although researchers often use repertoire size as a measure of song complexity, listeners to songs are unlikely to count entire repertoires and they may rely on other cues, such as syllable detection probability.Communicated by A. Cockburn     

Recovery of Faunal Communities During Tropical Forest Regeneration

Abstract:  As mature tropical forests are cleared, secondary forests may play an important role in the conservation of animal species, depending on how fast animal communities recover during forest regeneration. I reviewed published studies on the recovery of animal species richness and composition during tropical forest regeneration. In 38 of the 39 data sets I examined, conversion of forest to agriculture or pasture substantially reduced species richness. Given suitable conditions for forest recovery, the species richness of the animal taxa considered can be predicted to resemble that of mature forests roughly 20–40 years after land abandonment. At least for ants and birds, however, recovery of species composition appears to take substantially longer than recovery of species richness. Because species richness for many taxa appears to recover relatively rapidly in secondary forests, conservation of secondary forests may be an effective investment in future diversity. The slower recovery of species composition indicates, however, that some species will require stands of mature forest to persist.     

Conservation of Vascular Epiphyte Diversity in Mexican Coffee Plantations

Abstract:  Coffee plantations have replaced many lower-montane forests in the Neotropics, and ongoing intensification is converting traditional polycultures with a variety of shade trees to plantations with no or monospecific shade trees. To evaluate the impact of coffee cultivation on epiphyte diversity, I surveyed vascular epiphytes on shade trees in nine different coffee plantations and compared records with those in four natural forests in central Veracruz, Mexico. Eighty-nine species occurred in coffee plantations, and 104 species occurred in natural forests. The number of epiphytic species in traditional polycultures with old shade trees, mostly of the genus Inga , was similar to that in forests, but plantations with small trees and sparse shade hosted fewer epiphytes than those with large trees. Epiphyte communities were, however, more homogeneous in coffee plantations than in forests, possibly because of a drier microclimate and the lack of large and long-lived trees. These results demonstrate the value of traditional polycultures for epiphyte diversity, show the importance of conserving large shade trees, and suggest that these coffee systems may not be suitable for all epiphytes.     

Effect of Invasive Plant Species on Temperate Wetland Plant Diversity

Abstract:  Invasive species are a major threat to global biodiversity and an important cause of biotic homogenization of ecosystems. Exotic plants have been identified as a particular concern because of the widely held belief that they competitively exclude native plant species. We examined the correlation between native and invasive species richness in 58 Ontario inland wetlands. The relationship between exotic and native species richness was positive even when we controlled for important covarying factors. In addition, we examined the relationship between the abundance of four native species (  Typha latifolia, T. angustifolia, Salix petiolaris, Nuphar variegatum ) and four invasive species (  Lythrum salicaria, Hydrocharis morsus-ranae, Phalaris arundinacea, Rhamnus frangula ) that often dominate temperate wetlands and native and rare native species richness. Exotic species were no more likely to dominate a wetland than native species, and the proportion of dominant exotic species that had a significant negative effect on the native plant community was the same as the proportion of native species with a significant negative effect. We conclude that the key to conservation of inland wetland biodiversity is to discourage the spread of community dominants, regardless of geographical origin.     

Effects of site-selection bias on estimates of biodiversity change

Estimates of biodiversity change are essential for the management and conservation of ecosystems. Accurate estimates rely on selecting representative sites, but monitoring often focuses on sites of special interest. How such site-selection biases influence estimates of biodiversity change is largely unknown. Site-selection bias potentially occurs across four major sources of biodiversity data, decreasing in likelihood from citizen science, museums, national park monitoring, and academic research. We defined site-selection bias as a preference for sites that are either densely populated (i.e., abundance bias) or species rich (i.e., richness bias). We simulated biodiversity change in a virtual landscape and tracked the observed biodiversity at a sampled site. The site was selected either randomly or with a site-selection bias. We used a simple spatially resolved, individual-based model to predict the movement or dispersal of individuals in and out of the chosen sampling site. Site-selection bias exaggerated estimates of biodiversity loss in sites selected with a bias by on average 300–400% compared with randomly selected sites. Based on our simulations, site-selection bias resulted in positive trends being estimated as negative trends: richness increase was estimated as 0.1 in randomly selected sites, whereas sites selected with a bias showed a richness change of −0.1 to −0.2 on average. Thus, site-selection bias may falsely indicate decreases in biodiversity. We varied sampling design and characteristics of the species and found that site-selection biases were strongest in short time series, for small grains, organisms with low dispersal ability, large regional species pools, and strong spatial aggregation. Based on these findings, to minimize site-selection bias, we recommend use of systematic site-selection schemes; maximizing sampling area; calculating biodiversity measures cumulatively across plots; and use of biodiversity measures that are less sensitive to rare species, such as the effective number of species. Awareness of the potential impact of site-selection bias is needed for biodiversity monitoring, the design of new studies on biodiversity change, and the interpretation of existing data.     

Change in avian functional fingerprints of a Neotropical montane forest over 100 years as an indicator of ecosystem integrity

Ecologically relevant traits of organisms in an assemblage determine an ecosystem's functional fingerprint (i.e., the shape, size, and position of multidimensional trait space). Quantifying changes in functional fingerprints can therefore provide information about the effects of diversity loss or gain through time on ecosystem condition and is a promising approach to monitoring ecological integrity. This, however, is seldom possible owing to limitations in historical surveys and a lack of data on organismal traits, particularly in diverse tropical regions. Using data from detailed bird surveys from 4 periods across more than a century, and morphological and ecological traits of 233 species, we quantified changes in the avian functional fingerprint of a tropical montane forest in the Andes of Colombia. We found that 78% of the variation in functional space, regardless of period, was described by 3 major axes summarizing body size, dispersal ability (indexed by wing shape), and habitat breadth. Changes in species composition significantly altered the functional fingerprint of the assemblage and functional richness and dispersion decreased 35–60%. Owing to species extirpations and to novel additions to the assemblage, functional space decreased over time, but at least 11% of its volume in the 2010s extended to areas of functional space that were unoccupied in the 1910s. The assemblage now includes fewer large-sized species, more species with greater dispersal ability, and fewer habitat specialists. Extirpated species had high functional uniqueness and distinctiveness, resulting in large reductions in functional richness and dispersion after their loss, which implies important consequences for ecosystem integrity. Conservation efforts aimed at maintaining ecosystem function must move beyond seeking to sustain species numbers to designing complementary strategies for the maintenance of ecological function by identifying and conserving species with traits conferring high vulnerability such as large body size, poor dispersal ability, and greater habitat specialization. Article impact statement: Changes in functional fingerprints provide a means to quantify the integrity of ecological assemblages affected by diversity loss or gain.     

Obtaining species: sample size considerations

Suppose fish are to be sampled from a stream. A fisheries biologist might ask one of the following three questions: ‘How many fish do I need to catch in order to see all of the species?’, ‘How many fish do I need to catch in order to see all species whose relative frequency is more than 5%?’, or ‘How many fish do I need to catch in order to see a member from each of the species A, B, and C?’. This paper offers a practical solution to such questions by setting a target sample size designed to achieve desired results with known probability. We present three sample size methods, one we call ‘exact’ and the others approximate. Each method is derived under assumed multinomial sampling, and requires (at least approximate) independence of draws and (usually) a large population. The minimum information needed to compute one of the approximate methods is the estimated relative frequency of the rarest species of interest. Total number of species is not needed. Choice of a sample size method depends largely on available computer resources. One approximation (called the ‘Monte Carlo approximation’) gets within ±6 units of exact sample size, but usually requires 20–30 minutes of computer time to compute. The second approximation (called the ‘ratio approximation’) can be computed manually and has relative error under 5% when all species are desired, but can be as much as 50% or more too high when exact sample size is small. Statistically, this problem is an application of the ‘sequential occupancy problem’. Three examples are given which illustrate the calculations so that a reader not interested in technical details can apply our results.     

Effectiveness of Vegetation Surrogates for Parasitoid Wasps in Reserve Selection

Abstract:  Selecting suitable nature reserves is a continuing challenge in conservation, particularly for target groups that are time-consuming to survey, species rich, and extinction prone. One such group is the parasitoid Hymenoptera, which have been excluded from conservation planning. If basic characteristics of habitats or vegetation could be used as reliable surrogates of specific target taxa, this would greatly facilitate appropriate reserve selection. We identified a range of potential habitat indicators of the species richness of pimpline parasitoid communities (Hymenoptera: Ichneumonidae: Pimplinae, Diacritinae, Poemeniinae) and tested their efficiency at capturing the observed diversity in a group of small woodlands in the agricultural landscape of the Vale of York (United Kingdom). Eight of the 18 vegetation-based reserve-selection strategies were significantly better at parasitoid species inclusion than random selection of areas. The best strategy maximized richness of tree species over the entire reserve network through complementarity. This strategy omitted only 2–3 species more (out of 38 captured in the landscape as a whole) than selections derived from the parasitoid survey data. In general, strategies worked equally well at capturing species richness and rarity. Our results suggest that vegetation data as a surrogate for species richness could prove an informative tool in parasitoid conservation, but further work is needed to test how broadly applicable these indicators may be.