Comparison of ALAD activities of Citrobacter and Pseudomonas strains and their usage as biomarker for Pb contamination

Delta-aminolevulinate dehydratase (ALAD) activity has been used in prokaryotes and eukaryotes as a biomarker for environmental lead (Pb) exposure and toxicity. Microorganisms are sensitive indicators of toxicity at the fundamental level of ecological organization, but bacterial biomarker studies are focused on the Pseudomonas strains in Group I and E coli. The objectives of the present work were to determine if Burkholderia gladioli belonging to group II, due to its 16SrRNA similarity, can be used as biomarker in metal contamination and compare its possible usage with Pseudomonas aeruginosa and Citrobacter freundii (previously known as Esherichia freundii) and Bacterium freundii which are classified in Group I. In this study, ALAD activity in an environmental strains of Burkholderia gladioli, Pseudomonas aeruginosa, Citrobacter freundii were investigated to evaluate potential inhibition by Pb and other toxic metals. When the ALAD activity of Burkholderia gladioli was tested, Co and Pb decreased activity by 27 and 71%, respectively. In addition to these findings, Zn increased the activity up to 26%. These effects were found to be statistically meaningful (p < 0.05). It was determined that the increase of lead concentration inhibites the ALAD activity at each of the three strains. There was a statistically significant dose–response relationship between ALAD activity in cells of Burkholderia gladioli and Pb (Pearson correlation coefficent = −0.665; r ² = 0.665, and p < 0.001). The strongest ALAD inhibition which was measured was 90% at Burkholderia gladioli when protein extracts were incubated with 750 μM of Pb. The relationship between Pb and ALAD activity was statistically described by [ALAD Activity] = 0.476−0.000597 × [Pb]. According to the obtained results, we suggest that the ALAD of Burkholderia gladioli can be used as a biomarker for lead contamination in the environment.     

Variability in the phytoplankton community of Kavaratti reef ecosystem (northern Indian Ocean) during peak and waning periods of El Niño 2016

El Niño, an interannual climate event characterized by elevated oceanic temperature, is a prime threat for coral reef ecosystems worldwide, owing to their thermal threshold sensitivity. Phytoplankton plays a crucial role in the sustenance of reef trophodynamics. The cell size of the phytoplankton forms the “master morphological trait” with implications for growth, resource acquisition, and adaptability to nutrients. In the context of a strong El Niño prediction for 2015–2016, the present study was undertaken to evaluate the variations in the size-structured phytoplankton of Kavaratti reef waters, a major coral atoll along the southeast coast of India. The present study witnessed a remarkable change in the physicochemical environment of the reef water and massive coral bleaching with the progression of El Niño 2015–2016 from its peak to waning phase. The fluctuations observed in sea surface temperature, pH, and nutrient concentration of the reef water with the El Niño progression resulted in a remarkable shift in phytoplankton size structure, abundance, and community composition of the reef waters. Though low nutrient concentration of the waning phase resulted in lower phytoplankton biomass and abundance, the diazotroph Trichodesmium erythraeum predominated the reef waters, owing to its capability of the atmospheric nitrogen fixation and dissolved organic phosphate utilization.     

Heavy Metal Contents of the Karasu Creek Sediments, Nigde, Turkey

Heavy metal contamination in sediments of the Karasu spring was investigated in the presented study. In this respect, sediment samples were collected from contaminant sites along the spring starting from the spring water manifestation site, base of the Akkaya dam to the dam exit site. Heavy metal concentrations were determined by X-ray Fluorescence Spectrometer. Cobalt, copper, arsenic, tin, nickel, zinc, cadmium, lead, aluminum, iron, titan, chromium and manganese contents of the Karasu creek sediments are found as 18.30–69.00, 12.40–595.0 5.50–345.3, 5.80–15.1, 10.9–64.1, 28.90–103,300, 4.1–356.2, 7.70–37,840, 13,460–109,400, 11,740–62,900, 22.18–59.04, 41.70–369 and 12.09–3,480 mg/kg, respectively. Results indicate the presence of a contamination in the Karasu creek. All the metal concentrations were found to be exceeding their acceptable limit values. Eutrophication is developed in the Karasu creek and the Akkaya dam. It is thought that heavy metal accumulation in the creek is originated from discharge from mine quarries, industrial and domestic wastes. Protection zones should be defined and all necessary measures must be taken along the Karasu creek.     

Effects of land-use changes on landslides in a landslide-prone area (Ardesen, Rize, NE Turkey)

Various natural hazards such as landslides, avalanches, floods and debris flows can result in enormous property damages and human casualties in Eastern Black Sea region of Turkey. Mountainous topographic character and high frequency of heavy rain are the main factors for landslide occurrence in Ardesen, Rize. For this reason, the main target of the present study is to evaluate the landslide hazards using a sequence of historical aerial photographs in Ardesen (Rize), Turkey, by Photogrammetry and Geographical Information System (GIS). Landslide locations in the study area were identified by interpretation of aerial photographs dated in 1973 and 2002, and by field surveys. In the study, the selected factors conditioning landslides are lithology, slope gradient, slope aspect, vegetation cover, land class, climate, rainfall and proximity to roads. These factors were considered as effective on the occurrence of landslides. The areas under landslide threat were analyzed and mapped considering the landslide conditioning factors. Some of the conditioning factors were investigated and estimated by employing visual interpretation of aerial photos and topographic data. The results showed that the slope, lithology, terrain roughness, proximity to roads, and the cover type played important roles on landslide occurrence. The results also showed that degree of landslides was affected by the number of houses constructed in the region. As a consequence, the method employed in the study provides important benefits for landslide hazard mitigation efforts, because a combination of both photogrammetric techniques and GIS is presented.     

Vegetation as an Indicator of Soil Properties and Water Quality in the Akarçay Stream (Turkey)

In this study, the relationship among water quality, soil properties, and plant coverage in the region of the Akarçay stream was examined. Correlation analyses were carried out between soil samples taken from each of four plant communities in the Akarçay basin and water in the Akarçay stream. The four plant communities in the study area are as follows: Limonium lilacinum (Boiss. et Bal.) Wag., Alhagi pseudalhagi (M. Bieb.) Desv. Peganum harmala L., and Hordeum marinum Huds. subsp. marinum. B, Cl, EC, K, Mg, Na, pH, and SO₄ data from both soil and water samples were subjected to statistical analysis, and significant correlations were obtained (p < 0.05). These correlations indicated that the chemical features of the soil had a major effect on water quality. The important parameters were B, Cl, EC, K, Mg, Na, pH, and SO₄ for Limonium lilacinum communities; Ca, K, and pV for Peganum harmala; and B, Cl, Mg, pH, and pV for Alhagi pseudalhagi. There were also statistically significant relationships (p < 0.05) among the parameters examined. These findings strongly suggested that these plant communities can be used as indicators for soil chemistry and water quality.     

Protective effect of kombucha mushroom (KM) tea on phenol-induced cytotoxicity in albino mice

The present study was carried out to evaluate the protective role of kombucha mushroom (KM) tea on cytotoxicity induced by phenol (PHE) in mice. We used weight gain and micronucleus (MN) frequency as indicators of cytotoxicity and supported these parameters with pathological findings. The animals were randomly divided into seven groups: (Group I) only tap water (Group II) 1000 microl kg(-1) b. wt KM-tea, (Group III) 35 mg kg(-1) body wt. PHE (Group IV) 35 mg kg(-1) body wt. PHE + 250 microl kg(-1) b. wt KM-tea (Group V) 35 mg kg(-1) b. wt PHE + 500 microl kg(-1) b. wt KM-tea (Group VI) 35 mg kg(-1) b. wt PHE + 750 microl kg(-1) b. wt KM-tea, (Group VII) 35 mg kg(-1) b. wt PHE + 1000 microl kg(-1) b. wt KM-tea, for 20 consecutive days by oral gavage. The results indicated that all KM-tea supplemented mice showed a lower MN frequency than erythrocytes in only PHE-treated group. There was an observable regression on account of lesions in tissues of mice supplemented with different doses of KM-tea in histopathological observations. In conclusion, the KM-tea supplementation decreases cytotoxicity induced by PHE and its protective role is dose-dependent.     

Evaluation of germination, root growth and cytological effects of wastewater of sugar factory (Afyonkarahisar) using Hordeum vulgare bioassays

In this study, the effect of Afyonkarahisar Sugar Factory's discharge water on germination percentage, root growth and mitotic divisions of the root tip cells of Hordeum vulgare L. were investigated. Six concentrations of wastewater and ranging from 10(0), 10(?-1), 10(?-2), 10(?-3), 10(?-4), 10(?-5), were applied for 6, 12, 18 and 24 h, respectively. It was observed that the treatments reduced the germination percentages of H. vulgare grains and inhibited the root growth as well as reduced mitotic index compared to the control group at all concentrations. It was also observed that the increase of the concentrations of wastewater decreased the cell division, and several mitotic anomalies such as c-mitosis, lagging chromosomes, multipolar anaphases and chromosome bridges increased.     

Application of multivariate statistical approach to identify heavy metal sources in bottom soil of the Seyhan River (Adana), Turkey

In this study, freshly deposited soils were sampled from the Seyhan River (Turkey) from the exit of the Seyhan Dam to the Adana exit. Heavy metal contents were measured with X-ray fluorescence spectrometer. Multivariate statistical approach is used to identify the sources of heavy metals and other elements in soil samples. Considering the size of anomalies, metals are ranked as Co>Pb>Cr>Zn>Al. Based on the hierarchical cluster analysis results, three clusters were observed. P, Mg, Ti, Fe, Ca, Na, K, Al, Si, and Nb form the first cluster, Zn, Sr, Pb, and Cr associated as the second cluster, and Ba and Co form the third cluster. Three factors computed from principal component analysis are explained with a cumulative variance of 95%. The first factor is defined with “high background lithogenic factor” Co, the second factor with “local industrial factor” Pb, Cr, Ba, and Mg, and the third factor with “natural factor” Cr and Pb.     

Screening of δ-aminolevulinic acid dehydratase from Pseudomonas strains as biosensor for lead and some other metals contamination

δ-Aminolevulinic acid dehydratase (ALAD; E.C. 4.2.1.24) is a metalloprotein and plays a crucial role in heme synthesis. Its sensitivity to toxic metals depends on the metallic co-factors. In this study the effects of some heavy metals on ALADs activity of five Pseudomonas isolates from Akar?ay stream (Afyonkarahisar) have been studied in order to determine whether their ALADs could be used as biosensor for lead and other heavy metals contamination. The data obtained from the study were analysed statistically by using SPSS 10.0 software for Windows. According to the results, Ni(II) increased the ALAD activity of Pseudomonas putida, Pseudomonas pseudoalcaligenes and Pseudomonas aureginosa ATTC 27853. Mn(II) also increased the enzymic activity in all strains examined except P. pseudoalcaligenes. These were found not to be statistically meaningful. P. aeruginosa 2’s enzymic activity was inhibited by Mg(II) and Zn(II), significantly (p’lt;’.05). There was a statistically meaningful relation between enzymic activity of both P. pseudoalcaligenes, P. putida and increasing Pb(II) concentration (p’lt;’.05). In addition, a formula was also deviced in order to determine the doses of metals in the environment of the organisms. As a result of the study, we can suggest that Pseudomonas ALADs can be used as a biosensor for lead and some other heavy metal exposure in aquatic environments.     

Bioclimatic characteristic of oak species Quercus macranthera subsp. syspirensis and Quercus petraea subsp. pinnatiloba in Turkey

This study was carried out to determine some bioclimatic characteristics such as humidity category (Q2), winter variant (m), the length of the dry season (LDS) and the dry season water deficit (DSWD) of naturally growing two endemic oak taxa, Quercus macranthera subsp. syspirensis and Q. petraea subsp. pinnatiloba, living in Turkey. Our findings showed that bioclimatic tolerance range of Q. macranthera subsp. syspirensis possess 7 different types of Mediterranean bioclimate while Q. petraea subsp. pinnatiloba had 8 of them. Although Q. macranthera subsp. syspirensis was ranging among the semiarid, freezing and very cold, Q. petraea subsp. pinnatiloba was among sub-humid, freezing and very cold ambient. It was briefly established that Q. macranthera subsp. syspirensis prefers semi-arid and very cold/freezing conditions and Q. petraea subsp. pinnatiloba prefers sub-humid and cold/very cold climatic conditions.