Genomic erosion in a demographically recovered bird species during conservation rescue

The pink pigeon (Nesoenas mayeri) is an endemic species of Mauritius that has made a remarkable recovery after a severe population bottleneck in the 1970s to early 1990s. Prior to this bottleneck, an ex situ population was established from which captive-bred individuals were released into free-living subpopulations to increase population size and genetic variation. This conservation rescue led to rapid population recovery to 400–480 individuals, and the species was twice downlisted on the International Union for the Conservation of Nature (IUCN) Red List. We analyzed the impacts of the bottleneck and genetic rescue on neutral genetic variation during and after population recovery (1993–2008) with restriction site-associated sequencing, microsatellite analyses, and quantitative genetic analysis of studbook data of 1112 birds from zoos in Europe and the United States. We used computer simulations to study the predicted changes in genetic variation and population viability from the past into the future. Genetic variation declined rapidly, despite the population rebound, and the effective population size was approximately an order of magnitude smaller than census size. The species carried a high genetic load of circa 15 lethal equivalents for longevity. Our computer simulations predicted continued inbreeding will likely result in increased expression of deleterious mutations (i.e., a high realized load) and severe inbreeding depression. Without continued conservation actions, it is likely that the pink pigeon will go extinct in the wild within 100 years. Conservation rescue of the pink pigeon has been instrumental in the recovery of the free-living population. However, further genetic rescue with captive-bred birds from zoos is required to recover lost variation, reduce expression of harmful deleterious variation, and prevent extinction. The use of genomics and modeling data can inform IUCN assessments of the viability and extinction risk of species, and it helps in assessments of the conservation dependency of populations.     

Nucleic acid concentrations and enzyme activities as correlates of growth rate of the saithe Pollachius virens: growth-rate estimates of open-sea fish

The aim of this study was to estimate the growth rate of saithe, Pollachius virens L., in wild populations collected from around the Beryl Alpha oil platform in October 1988 and from Loch Ewe on the west coast of Scotland in August 1989, by comparing the concentrations of various growth-rate indicators in the white muscle with those of laboratory-maintained individuals of known growth rates. There were significant correlations between the individual growth rates of laboratory-maintained saithe and concentrations of white muscle RNA expressed as g RNA mg^-1 protein, mg RNA mg^-1 DNA and as mg RNA g^-1 muscle. Growth rate was also correlated with the activities of the enzymes citrate synthase, cytochrome oxidase and lactate dehydrogenase. RNA concentrations decreased with increasing body size, and weight-corrected estimates of RNA concentrations for a standard-sized individual were determined from the scaling relationships. RNA concentrations expressed in three different ways gave similar estimates of the growth rate for two samples of wild saithe, one from around an oil platform and the other from the west coast of Scotland. RNA concentrations were correlated with aerobic enzyme levels in oil-platform fish, although the growth rate estimates of the same wild fish were lower when expressed as a function of aerobic enzyme levels than when expressed as a function of lactate dehydrogenase concentration. It is concluded that the capacity for protein synthesis of white muscle expressed as RNA concentrations in relation to wet or dry weight may be used as an estimate of instantaneous growth rate and that additional confidence in such estimates may be gained from measurement of the levels of aerobic enzymes.     

Longer-duration uses of tetracyclines and penicillins in U.S. food-producing animals: Indications and microbiologic effects

We review and analyze regulatory categories for longer duration of use (defined as ≥ 7 day) tetracyclines (TCs) and penicillins (PNs) approved for U.S. livestock and poultry, together with scientific studies, surveillance programs and risk assessments pertaining to antimicrobial resistance. Indications listed on a government database were grouped into three broad categories according to the terminology used to describe their use: disease control (C), treatment (T) and growth improvement (G). Consistent with mostly therapeutic uses, the majority (86%) of listed indications had C and/or T terms. Several studies showed interruption of early disease stages in animals and modulation of intestinal microflora. Longer-duration exposures are consistent with bacteriostatic modes of action, where adequate exposure time as well as concentration is needed for sufficient antimicrobial activity. Other effects identified included reduced animal pathogen prevalence, toxin formation, inflammation, environmental impacts, improved animal health, reproductive measures, nutrient utilization, and others. Several animal studies have shown a limited, dose-proportionate, selective increase in resistance prevalence among commensal animal bacteria following longer-duration exposures. Pathogen surveillance programs showed overall stable or declining resistance trends among sentinel bacteria. Quantitative, microbiologically detailed resistance risk assessments indicate small probabilities of human treatment failure due to resistance under current conditions. Evaluations of longer-duration uses of TCs, PNs, and other antimicrobial classes used in food-producing animals should consider mechanisms of activity, known individual- and population-level health and waste reduction effects in addition to resistance risks.     

Nitrogen and phosphorus exports from high rainfall zone cropping in Australia: issues and opportunities for research

Cropping is one of the many industries contributing to the excessive loading of nitrogen (N) and phosphorus (P) to rivers and lakes in Australia. Nitrogen and P exports from cropping systems have not been systematically investigated to the same extent as those from other agricultural sectors, such as dairy pastures. Therefore, this review relies heavily on information derived from agronomy and other fundamental studies on soil-nutrient interactions to determine the potential for nutrient export from high rainfall zone (HRZ) cropping. There is a great deal of variation in environmental and management strategies across cropping in the HRZ, which suggests that nutrient exports could occur under a range of scenarios. The potential for exports is therefore discussed within a conceptual framework of nutrient sources, mechanisms for mobilization, and transport pathways in HRZ cropping. Transport refers to nutrient movement by flowing water after it has been mobilized, and export refers to the transfer of nutrients from one landscape compartment (e.g., a soil) to another (e.g., a stream or lake). The transport of nutrients from HRZ cropping can occur through surface and/or subsurface pathways depending on factors such as landform and infiltration and nutrient sorption characteristics of the soil profile. Surface pathways are likely to be more significant for phosphorus. For N, subsurface movement is likely to be as significant as surface movement because nitrates are generally not bound by most soils. Information about mechanisms of nutrient mobilization is essential for developing management strategies to control nutrient exports from HRZ cropping.