Characterization of microbial communities from coastal waters using microarrays

Molecular methods, including DNA probes, were used to identify and enumerate pathogenic Vibrio species in the Chesapeake Bay; our data indicated that Vibrio vulnificus exhibits seasonal fluctuations in number. Our work included a characterization of total microbial communities from the Bay; development of microarrays that identify and quantify the diversity of those communities; and observation of temporal changes in those communities. To identify members of the microbial community, we amplified the 16S rDNA gene from community DNA isolated from a biofilm sample collected from the Chesapeake Bay in February, 2000. The resultant 75 sequences were 95% or more similar to 7 species including two recently described Shewanella species, baltica and frigidimarina, that have not been previously isolated from the Chesapeake. When the genera of bacteria from biofilm after culturing are compared to those detected by subcloning amplified 16S fragments from community DNA, the cultured sample exhibited a strong bias. In oysters collected in February, the most common bacteria were previously unknown. Based on our 16S findings, we are developing microarrays to detect these and other microbial species in these estuarine communities. The microarrays will detect each species using four distinct loci, with the multiple loci serving as an internal control. The accuracy of the microarray will be measured using sentinel species such as Aeromonas species, Escherichia coli, and Vibrio vulnificus. Using microarrays, it should be possible to determine the annual fluctuations of bacterial species (culturable and non-culturable, pathogenic and non-pathogenic). The data may be applied to understanding patterns of environmental change; assessing the health of the Bay; and evaluating the risk of human illness associated with exposure to and ingestion of water and shellfish.     

Emissions from heated indoor dust

Settled indoor dust was collected from a university building, and the fine fraction was heated in the temperature range of 50-250 degrees C. Emissions of compounds were analysed and identified in a system consisting of a thermal desorption unit coupled to a gas chromatograph-mass spectrometer (GC-MS). The heating took place in both an oxidative (air) and an inert (He) atmosphere. The results indicate that oxidation of adsorbed compounds occurred, as well as decomposition of the dust itself. The emission in air started somewhere between 150 and 200 degrees C, with aldehydes and ketones as the main compounds. When heated in the inert atmosphere, semivolatile organic compounds (SVOCs) were emitted at temperatures above 150 degrees C. These compounds were not found in the air system, probably due to oxidation. Based on the obtained results we recommend that the temperature of hot surfaces in indoor environments should be kept below 150 degrees C to avoid oxidation of indoor dust and minimise the emissions.     

The hypoxia avoidance behaviour of juvenile Atlantic cod (<Emphasis Type="Italic">Gadus morhua</Emphasis> L.) depends on the provision and pressure level of an O<Subscript>2</Subscript> refuge

The frequency of low O₂ (hypoxia) has increased in coastal marine areas but how fish avoid deleterious water masses is not yet clear. To assess whether the presence and oxygen pressure (PO₂) level of an O₂ refuge affects the hypoxia avoidance behaviour of fish, individual Atlantic cod (Gadus morhua L.) were exposed to a range of O₂ choices in a 2-way choice chamber at 11.4°C over two different experiments. Cod in the first experiment were allowed access to a fixed O₂ refuge (fully air-saturated seawater) whilst oxygen pressure (PO₂) on the other side was reduced in steps to a critically low level, i.e. 4.3 kPa—a point where cod can no longer regulate O₂ consumption. Under these conditions, cod did not avoid any level of hypoxia and fish swimming speed also remained unchanged. In contrast, strong avoidance reactions were exhibited in a second experiment when fish were again exposed to 4.3 kPa but the safety, i.e. PO₂, of the refuge was reduced. Fish not only spent less time at 4.3 kPa as a result of fewer sampling visits but they also swam at considerably slower speeds. The presence of an avoidance response was thus strongly related to refuge PO₂ and it is unlikely that cod, and possibly other fish species, would enter low O₂ to feed in the wild if a sufficiently safe O₂ refuge was not available. It is therefore hypothesized that the feeding range of fish may be heavily compressed if hypoxia expands and intensifies in future years.     

A Global Model Tracking Water, Nitrogen, and Land Inputs and Virtual Transfers from Industrialized Meat Production and Trade

Rising populations and incomes throughout the world have boosted meat demand by over 75% in the last 20years, intensifying pressures on production systems and the natural resources to which they are linked. As a growing proportion of global meat production is traded, the environmental impacts of production become increasingly separated from where the meat is consumed. In this paper, we quantify the use of three important resources associated with industrial livestock production and trade—water, land, and nitrogen—using a country-specific model that combines trade, agronomic, biogeochemical, and hydrological data. Our model focuses on pigs and chickens, as these animals are raised predominantly in intensive systems using concentrated, compound feeds. The results describe the geographical patterns of environmental resource use due to meat production, trade, and consumption. We show that US feed, animal, and meat destined for export require almost as much nitrogen and land, and 20% more water, than products destined for domestic consumption. Model results also demonstrate that among various production factors, improvements in crop yields and animal feed conversion efficiencies result in the most significant reductions in environmental harm. By explicitly tracking the externalities of meat production, we hope to bolster suppliers’ accountability and provide better information to meat consumers.

Use of Fenton's Reagent as a Disinfectant

Several compositions of Fenton's Reagent and hydrogen peroxide alone were used to disinfect combined sewage samples from a wastewater treatment facility. The presettled samples contained suspended solids (SS) and dissolved organic carbon (DOC) at concentrations of 28 and 290 mg/L, respectively. Disinfection with Fenton's Reagent was carried out at a pH between 5.90 and 6.0 and at a temperature of 25°C. All disinfected samples contained residual oxidants. Under all reaction conditions studied, complete inactivation of E. coli was achieved within one minute of the addition of Fenton's Reagent. Disinfection with hydrogen peroxide alone under similar conditions is incomplete even under much longer contact times. © 2009 Wiley Periodicals, Inc.     

Noncombustion technologies for remediation of persistent organic pollutants in stockpiles and soil

Persistent organic pollutants (POPs) are a set of chemicals that are toxic, persist in the environment for long periods of time, and biomagnify as they move up through the food chain. Combustion technologies have been the principal technology used to destroy POPs. However, combustion technologies can create polychlorinated dibenzo‐p‐dioxins and polychlorinated dibenzo‐p‐furans, which are human carcinogens. Two organizations, the United Nations Environment Programme (UNEP) and the International HCH and Pesticides Association (IHPA) have developed detailed reports and fact sheets about noncombustion technologies for POP treatment. This article is intended to update and summarize these reports in a concise reader's guide, with links to sources of further information. The updated information was obtained by reviewing various Web sites and documents, and by contacting technology vendors and experts in the field. © 2006 Wiley Periodicals, Inc.     

Hypoxia increases the behavioural activity of schooling herring: a response to physiological stress or respiratory distress?

Atlantic herring, Clupea harengus, increase their swimming speed during low O₂ (hypoxia) and it has been hypothesised that the behavioural response is modulated by the degree of “respiratory distress” (i.e. a rise in anaerobic metabolism and severe physiological stress). To test directly whether a deviation in physiological homeostasis is associated with any change in behavioural activity, we exposed C. harengus in a school to a progressive stepwise decline in water oxygen pressure and measured fish swimming speed and valid indicators of primary and secondary stress (i.e. blood cortisol, lactate, glucose and osmolality). Herring in hypoxia increased their swimming speed by 11–39% but only when was <8.5 kPa and in an unsteady (i.e. declining) state. In parallel with the shift in behaviour, plasma cortisol also exhibited an increase with plasma osmolality was subject to a transient rise at 8.5 kPa and plasma glucose was generally reduced at However, without any rise in anaerobically derived lactate levels, there was no evidence of respiratory distress at any set We show that a shift in physiological homeostasis is indeed linked with an increase in the swimming speed of herring but the physiological response reflects a hypoxia-induced shift in metabolic fuel-use rather than respiratory distress per se. The significance of this behavioural–physiological reaction is discussed in terms of behavioural-energetic trade-offs, schooling dynamics and the hypoxia tolerance of herring.     

Look before you leap - individual variation in social vigilance shapes socio-spatial group properties in an agent-based model

Next to predator detection, primate vigilance also serves to keep track of relevant conspecifics. The degree of vigilance towards group members often reflects the dominance rank of an individual: subordinates pay attention to dominants. Although it has been suggested that subordinates' vigilance may result in spatial centrality of dominants, this has not been addressed in either empirical or modeling studies. Using agent-based models, we determined how social vigilance affects socio-spatial properties of primate groups. A basic model without social vigilance, where individuals avoid potential aggressors (avoidance model), was contrasted with two models that each additionally included a different type of social vigilance: a) monitoring a specific potential aggressor to remain informed on its whereabouts (monitoring model) or b) scanning the whole group to detect potential aggressors (scanning model). Adding monitoring or scanning behavior to the avoidance model reinforced spatial centrality of dominants, a pattern often observed in primates, and resulted in more spread out groups. Moreover, variation in scanning tendency alone was already sufficient to generate spatial centrality of dominants: frequently scanning subordinates could move further away from the group center than dominants, before losing sight of group members. In the monitoring model, two mechanisms caused decreased encounter frequencies among subordinates: a) increased inter-individual distances, and b) frequent monitoring of central dominants. In the scanning model, encounters among subordinates decreased due to increased inter-individual distances. This agent-based model study provides a clear indication that individual variation in social vigilance may be an important structuring feature of primate social groups.     

Tail beat frequency as a predictor of swimming speed and oxygen consumption of saithe (<Emphasis Type="Italic">Pollachius virens</Emphasis>) and whiting (<Emphasis Type="Italic">Merlangius merlangus</Emphasis>) during forced swimming

Oxygen consumption and tail beat frequency were measured on saithe (Pollachius virens) and whiting (Merlangius merlangus) during steady swimming. Oxygen consumption increased exponentially with swimming speed, and the relationship was described by a power function. The extrapolated standard metabolic rates (SMR) were similar for saithe and whiting, whereas the active metabolic rate (AMR) was twice as high for saithe. The higher AMR resulted in a higher scope for activity in accordance with the higher critical swimming speed (U _crit) achieved by saithe. The optimum swimming speed (U _opt) was 1.4 BL s⁻¹ for saithe and 1.0 BL s⁻¹ for whiting with a corresponding cost of transport (COT) of 0.14 and 0.15 J N⁻¹ m⁻¹. Tail beat frequency correlated strongly with swimming speed as well as with oxygen consumption. In contrast to swimming speed and oxygen consumption, measurement of tail beat frequency on individual free-ranging fish is relatively uncomplicated. Tail beat frequency may therefore serve as a predictor of swimming speed and oxygen consumption of saithe and whiting in the field.     

Pollution in coastal fog at Alto Patache,Northern Chile

Background  

The Atacama Desert in Northern Chile is one of the most arid places on earth. However, fog occurs regularly at the coastal mountain range and can be collected at different sites in Chile to supply settlements at the coast with freshwater. This is also planned in the fog oasis Alto Patache (20°49′S, 70°09′W). For this pilot study, we collected fog water samples in July and August 2008 for chemical analysis to find indications for its suitability for domestic use.