Overexpression of NADH oxidase gene from Deinococcus geothermalis in Escherichia coli

When using stable enzyme genes from a thermophile to create a biosensor in Escherichia coli, it is vital that these genes be overexpressed in order to provide a sufficient supply of enzymes. In this study, overexpression of the NADH oxidase (Nox) gene from the thermophile Deinococcus geothermalis was successfully achieved with the aim of creating a stable biosensor active at room temperatures. To do so, modification of 10 nucleotides, GAAATTAACT, upstream of the start codon of the Nox gene was necessary.     

Overexpression of NADH oxidase gene from Deinococcus geothermalis in Escherichia coli

When using stable enzyme genes from a thermophile to create a biosensor in Escherichia coli, it is vital that these genes be overexpressed in order to provide a sufficient supply of enzymes. In this study, overexpression of the NADH oxidase (Nox) gene from the thermophile Deinococcus geothermalis was successfully achieved with the aim of creating a stable biosensor active at room temperatures. To do so, modification of 10 nucleotides, GAAATTAACT, upstream of the start codon of the Nox gene was necessary.     

Water resource management in Japan: Forest management or dam reservoirs?

Researchers and journalists in Japan recently proposed forest management as an alternative to dam reservoir development for water resource management. To examine the validity of the proposal, we compared the potential low-flow increase due to forest clearcutting with the increase due to dam reservoir development. Here, we focused on forest clearcutting as an end member among various types of forest management. We first analyzed runoff data for five catchments and found a positive correlation between annual precipitation and the low-flow increase due to deforestation. We then examined the increase in low-flow rates due to dam reservoir development (dQ_d) using inflow and outflow data for 45 dam reservoirs across Japan. Using the relationship between annual precipitation and the low-flow increase due to deforestation, we estimated the potential increase in the low-flow rate for each dam reservoir watershed if forests in the watershed were clearcut (dQ_f). Only 6 of the 45 samples satisfied dQ_f > dQ_d, indicating that the potential increase in the low-flow rate due to forest clearcutting was less than the increase due to dam reservoir development in most cases. Twenty-five of the 45 samples satisfied dQ_f < 0.2 dQ_d, indicating the potential increase in the low-flow rate due to forest clearcutting was less than 20% of the increase due to dam reservoir development in more than half the cases. Therefore, forest management is far less effective for water resource management than dam reservoir development is in Japan.     

Identification and significance of pyrochlorins in fecal pellets of the marine malacostracan crustaceans Heptacarpus rectirostris and Palaemon pacificus

The chlorophyll derivatives, especially pyrochlorins, from macrobentho-pelagic fecal pellets were separated and identified using reversed-phase high-per-formance liquid chromatography-mass spectrometry (HPLC-MS). HPLC-frit-fast atom bombardment (FAB)-MS analysis of fecal pellet extracts was performed, and the ions at m/z (mass-to-charge ratio), 534 [M]⁺, 827 [M+H]⁺ and 812 [M]⁺ as base peaks contirm the presence of pyropheophorbide a, pyropheophytin b and pyropheophytin a, respectively. Identification of pyrochlorins in fecal pellets suggests that decarbomethoxylation of chlorophylls can occur during bentho-pelagic grazing and that pyrochlorins in sedimentary environments may be derived in part from fecal pellets.     

Measurement of photosynthetic production of a marine phytoplankton population using a stable 13C isotope

The use of stable isotope of carbon, ¹³C, for the determination of the photosynthetic rate of a marine phytoplankton population was examined. Particular concern was paid to the effects of non-phytoplanktonic organic carbon and the enrichment of inorganic carbon on the estimation of the photosynthetic rate. Photosynthetic rates determined by the ¹³C method showed a remarkable agreement with those determined by the ¹⁴C method. Insitu determinations of photosynthetic rate were made in three different water types: open ocean, coastal and neritic waters, which included oligo- and mesotrophic waters, by using the ¹³C method established.     

Predation risk increases dispersal distance in prey

Understanding the ecological factors that affect dispersal distances allows us to predict the consequences of dispersal. Although predator avoidance is an important cause of prey dispersal, its effects on dispersal distance have not been investigated. We used simple experimental setups to test dispersal distances of the ambulatory dispersing spider mite (Tetranychus kanzawai) in the presence or absence of a predator (Neoseiulus womersleyi). In the absence of predators, most spider mites settled in adjacent patches, whereas the majority of those dispersing in the presence of predators passed through adjacent patches and settled in distant ones. This is the first study to experimentally demonstrate that predators induce greater dispersal distance in prey.     

Changes in peak flow with decreased forestry practices: analysis using watershed runoff data

The prevalence of forestry practices such as thinning and pruning have gradually decreased since the 1980s. Researchers have noted an increased flood risk with decreased forestry practices for coniferous plantations in Japan on the basis of infiltration and overland flow measurements at a plot scale (typically several square meters). However, no studies have examined changes in peak flow with decreased forestry practices at a watershed scale (typically several tens or hundreds of square kilometers) even though flood disasters generally occur at this scale in Japan. We examined changes in frequency distributions of daily precipitation (P) and runoff (Q) during the period 1979-2007 at the Terauchi watershed, where forestry practices are known to have decreased. For this purpose, we divided P and Q data into 14 and 15 classes according to the magnitude, respectively, and examined changes in the frequency for each class during the period. We observed no significant increasing trend for any P or Q class. Even when taking into account the effect of interannual variations in precipitation on the frequency for each Q class, there was no significant increasing trend in the frequencies except for two Q classes with moderate Q values. These results suggest that the increase in flood risk due to decreased forestry practices might be less than expected.     

Negatively-charged air conditions and responses of the human psycho-neuro-endocrino-immune network

BACKGROUND: Against increasing environmental adverse effects on human health such as those associated with water and ground pollution, as well as out- and indoor air conditions, trials were conducted to support and promote human health by improving the indoor air atmosphere. This study was performed to estimate the effect of negatively-charged air conditions on human biological markers related to the psycho-neuro-endocrino-immune (PNEI) network. OBJECTIVES: After construction of negatively-charged experimental rooms (NCRs), healthy volunteers were admitted to these rooms and control rooms (CTRs) and various biological responses were analyzed. METHODS: NCRs were constructed using a fine charcoal coating and applying an electric voltage (72 V) between the backside of walls and the ground. Various biological markers were monitored that related to general conditions, autonomic nervous systems, stress markers, immunological parameters and blood flow. RESULTS: Regarding the indoor environment, only negatively-charged air resulted in the difference between the CTR and NCR groups. The well-controlled experimental model-room to examine the biological effects of negatively-charged air was therefore established. Among the various parameters, IL-2, IL-4, the mean RR interval of the heart rate, and blood viscosity differed significantly between the CTR and NCR groups. In addition, the following formula was used to detect NCR-biological responses: Biological Response Value (BRV)=0.498+0.0005 [salivary cortisol]+0.072 [IL-2]+0.003 [HRM-SD]-0.013 [blood viscosity]-0.009 [blood sugar]+0.017 [pulse rate]. CONCLUSIONS: Negatively-charged air conditions activated the immune system slightly, smoothened blood flow and stabilized the autonomic nervous system. Although this is the first report to analyze negatively-charged air conditions on human biological responses, the long-term effects should be analyzed for the general use of these artificial atmospheres.     

Establishment of a sampling strategy for the use of blue mussels as an indicator of organotin contamination in the coastal environment

The application of the Mussel Watch concept to the assessment of chemical contamination in the coastal environment is still premature, since the relationship between the physiological and ecological aspects of blue mussels and the accumulation of contaminants in their soft tissues remains unclear. We cannot yet directly estimate with known confidence the degree of chemical contamination from the levels of contaminants in the soft tissues of mussels. An understanding of the source and range of variability in the tissue concentrations of contaminants is essential, and the establishment of a biomonitoring sampling strategy to minimize the effect of identified sources of variability is required. The present study was conducted to clarify the characteristics of organotin accumulation in blue mussels under various conditions in Tokyo Bay, and to establish an optimized sampling strategy of mussels as exposure indicators of organotin contamination in Japan. It was clear that the sample number, individual size, spawning activity and vertical habitat were factors causing a variation of tissue concentration. Based on a quantitative estimation of the variability of organotin concentration in mussel tissues under various physiological and natural conditions, we suggest that a composite sample of 30 mussels (3-5 cm in shell length), collected from the infralittoral zone prior to their spawning season, is essential to reduce the variability between individuals and to obtain reproducible analytical values at a sampling site. For monitoring sites where natural blue mussels cannot be collected, an alternative method of transplanting blue mussels from a relatively clean area would be required.     

Assessing vulnerability to invasion by nonnative plant species at multiple spatial scales

Basic information on where nonnative plant species have successfully invaded is lacking. We assessed the vulnerability of 22 vegetation types (25 sets of four plots in nine study areas) to nonnative plant invasions in the north–central United States. In general, habitats with high native species richness were more heavily invaded than species-poor habitats, low-elevation areas were more invaded than high-elevation areas, and riparian zones were more invaded than nearby upland sites. For the 100 1000-m² plots (across all vegetation types), 50% of the variation in nonnative species richness was explained by longitude, latitude, native plant species richness, soil total percentage nitrogen, and mean maximum July temperature (n = 100 plots; P < 0.001). At the vegetation-type scale (n = 25 sets of four 1000-m² plots/type), 64% of the variation in nonnative species richness was explained by native plant species richness, elevation, and October to June precipitation (P < 0.001). The foliar cover of nonnative species (log) was strongly positively correlated with the nonnative species richness at the plot scale (r = 0.77, P < 0.001) and vegetation-type scale (r = 0.83, P < 0.001). We concluded that, at the vegetation-type and regional scales in the north–central United States, (1) vegetation types rich in native species are often highly vulnerable to invasion by nonnative plant species; (2) where several nonnative species become established, nonnative species cover can substantially increase; (3) the attributes that maintain high native plant species richness (high light, water, nitrogen, and temperatures) also help maintain nonnative plant species richness; and (4) more care must be taken to preserve native species diversity in highly vulnerable habitats.