Overexpression of NADH oxidase gene from Deinococcus geothermalis in Escherichia coli

When using stable enzyme genes from a thermophile to create a biosensor in Escherichia coli, it is vital that these genes be overexpressed in order to provide a sufficient supply of enzymes. In this study, overexpression of the NADH oxidase (Nox) gene from the thermophile Deinococcus geothermalis was successfully achieved with the aim of creating a stable biosensor active at room temperatures. To do so, modification of 10 nucleotides, GAAATTAACT, upstream of the start codon of the Nox gene was necessary.     

The New Zealand experience of varroa invasion highlights research opportunities for Australia

The Varroa mite (Varroa destructor) is implicated as a major disease factor in honey bee (Apis mellifera) populations worldwide. Honey bees are extensively relied upon for pollination services, and in countries such as New Zealand and Australia where honey bees have been introduced specifically for commercial pollinator services, the economic effects of any decline in honey bee numbers are predicted to be profound. V. destructor established in New Zealand in 2000 but as yet, Australia remains Varroa-free. Here we analyze the history of V. destructor invasion and spread in New Zealand and discuss the likely long-term impacts. When the mite was discovered in New Zealand, it was considered too well established for eradication to be feasible. Despite control efforts, V. destructor has since spread throughout the country. Today, assessing the impacts of the arrival of V. destructor in this country is compromised by a paucity of data on pollinator communities as they existed prior to invasion. Australia’s Varroa-free status provides a rare and likely brief window of opportunity for the global bee research community to gain understanding of honey bee-native pollinator community dynamics prior to Varroa invasion.     

Estimation of 14CO2 flux at soil-atmosphere interface and distribution of 14C in forest ecosystem

To realize the dynamical behavior of 14C among exchangeable carbon reservoirs in terrestrial environment, a method for in situ determination of 14CO2 flux at soil-atmosphere interface and a high flow rate CO2 sampler were developed. This method allowed us to collect integrated quantity of CO2 for determining 14C activity over an extended time period under environmental conditions with minimal site disturbance. The 14CO2 flux from ground surface was estimated to be 1.59 x 10(-5) Bq m (-2) S (-1) in a forest floor with the method. The specific activities of 14C in environmental materials such as some biological and air samples were also determined in the vicinity of the place, where the flux measurement was made, to discuss the behavior of 14C in the forest ecosystem. The results indicated that fresh pine needles had a similar 14C specific activity to the atmospheric CO2 at the same height due to its fairly rapid equilibrium, 14C specific activity in the atmospheric CO2 has a concentration gradient near the ground surface and, at least in this site, CO2 with high 14C specific activity was generated by decomposition of soil organic matter which may be accumulated in soil as a result of former nuclear weapons tests.     

Fishery resource management in Chilika lagoon: a study on coastal conservation in the Eastern Coast of India

A significant proportion of the fishing population comprises small-scale fishermen and many studies illustrate that these people are exploited by middlemen in the process of fish marketing combined with money lending. The negative dependency gives rise to poverty and triggers indiscriminate fish catch that threatens fishery resources depletion. This article explores the root causes of failures in resource-led development from the viewpoint of coastal resource conservation. The study presents a case study of Chilika lagoon, India and focuses on the interaction between small-scale fishermen and middlemen. The findings reveal that most of the small-scale fishermen have been exploited by specific middlemen and the underlying causes of the present fish marketing structure stem from (i) indebtedness and (ii) the unstable situation because of perpetual conflicts over fishery resources among the fishers across Chilika lagoon. Based on these observations, this article presents some recommendations on fishery resource conservation from the perspective of a fish marketing structure.

Evolutionary relationships of deep-sea mussels inferred by mitochondrial DNA sequences

In order to elucidate the evolutionary process of deep-sea Bathymodiolus mussels, we investigated the phylogenetic relationships of 16 species worldwide by analyzing nucleotide sequences of the mitochondrial COI and ND4 genes. Deep-sea mussels were clustered into three groups by basal trichotomous divergence. The first was composed of four species found in Japanese waters and one species from the Gulf of Mexico, which contain methanotrophic endosymbiotic bacteria. The second included nine species distributed in the West and East Pacific, Indian, and Atlantic Oceans. Members of the second group were trichotomously divided into the Indo-West Pacific, Atlantic, and East Pacific subclusters. The Indo-West Pacific subcluster was composed of three very closely related species with mutual genetic distances at the intraspecific level (av. 0.019 in COI and 0.009 in ND4 relative to av. 0.156 in COI and 0.265 in ND4 among Bathymodiolus species other than Cluster A species), suggesting some gene flow among these species. The third consisted of two West Pacific species. Species in the second and third groups contain mainly thioautotrophic endosymbionts, including some species harboring both methanotrophs and thioautotrophs.     

Quantitative analysis of perfluorinated chemicals in media for in vitro fertilization and related samples

The actual standard in vitro fertilization (IVF) protocol recommends an overnight gamete co-incubation. All of the culture media used for human IVF are supplemented with serum or albumin. In the present study, we determined the concentrations of perfluorinated chemicals (PFCs) in IVF media (IVFM) and related samples by liquid chromatography with tandem mass spectrometry (LC/MS/MS). The results indicated that the concentrations of PFOS and PFOA in the protein source were higher than those in the IVFM samples. Compared with human plasma concentrations of PFCs, PFCs in all of the IVFM samples, such as PFBS, PFHxS and PFOA, were either not detected or present at only trace levels, even when protein source was added. LC/MS/MS could be used to determine PFCs in IVFM samples in future studies of the effects of PFC exposure on intrauterine insemination.     

Rapid hydropyrolysis of model compounds for epoxy resin oligomers and biomass tar

The rapid hydropyrolysis of model compounds for epoxy resin oligomers and biomass tar was carried out in a hydrogen atmosphere at 1073 K and 973 K. The assumed oligomers were partially pyrolyzed epoxy resin with biomass tar as solvent for the resin. The product distributions obtained from rapid hydropyrolysis of phenol and bisphenol-A are shown. We also discuss the effects of reaction temperature and hydrogen partial pressure on the product yield. In particular, more phenol was produced from bisphenol-A at 973 K than at 1073 K. The yield of methane, which was the final hydropyrolysis product, increased with increasing hydrogen partial pressure, whereas benzene and phenol were believed to behave as intermediate products in the hydropyrolysis reaction. The results suggest that phenol could be obtained with high selectivity from tar by optimizing the reaction conditions.     

Overexpression of NADH oxidase gene from Deinococcus geothermalis in Escherichia coli

When using stable enzyme genes from a thermophile to create a biosensor in Escherichia coli, it is vital that these genes be overexpressed in order to provide a sufficient supply of enzymes. In this study, overexpression of the NADH oxidase (Nox) gene from the thermophile Deinococcus geothermalis was successfully achieved with the aim of creating a stable biosensor active at room temperatures. To do so, modification of 10 nucleotides, GAAATTAACT, upstream of the start codon of the Nox gene was necessary.     

Isoprene emission from tropical trees in Okinawa Island, Japan

This study surveyed isoprene emission from 42 indigenous and exotic tropical trees in subtropic Okinawa, Japan. Of the 42 trees studied, 4 emitted isoprene at a rate in excess of 20 μg g⁻¹ h⁻¹, and 28 showed the rates of 1–10 μg g⁻¹ h⁻¹. The remainder emitted less than 1 μg g⁻¹ h⁻¹. The majority of trees in this study may therefore fall within the lower emitting species. However, species in Moraceae that is indigenous in Okinawa emitted isoprene at relatively higher rates with an average of 14.2 μg g⁻¹ h⁻¹. The highest emission rate of 107.1 μg g⁻¹ h⁻¹ for Ficus virgata yielded the area basis rate of 47.4 nmol m⁻² s⁻¹, which is almost equivalent to the rate of high emitting species. Furthermore, a linear relationship between light intensity and isoprene emission was noted with Ficus virgata up to 1700 μmol m⁻² s⁻¹. These findings may show the potential importance of subtropical areas as sources of isoprene to the atmosphere.