Quantitative and Molecular Genetic Variation in Captive Cotton-Top Tamarins (Saguinus oedipus)

Most genetic surveys of captive and endangered populations are carried out with single gene characters bearing no direct relationship to life history or other features for which genetic variation needs to be maintained. Quantitative genetic estimates of heritable variation for life-history traits may be a more direct and appropriate measure of genetic variation for some conservation purposes. Furthermore, recent theoretical and empirical results indicate that genetic variation measured on these two levels may not be concordant. We analyzed heterozygosity at 41 allozyme loci and heritability for body weight in captive cotton-top tamarins ( Saguinus oedipus ) from the Marmoset Research Center of the Oak Ridge Associated Universities in order to compare these two levels of genetic variation. Cotton-top tamarins are a highly endangered species native to Colombia. Many animals currently reside in research facilities and zoological parks. A total of 106 animals were used in the isozyme survey, while data on 364 animals contributed to the quantitative genetic study of body weight. We found a very low average heterozygosity ( H = 1%) for this colony. Body weight was moderately and significantly heritable ( h ² = 35%). This heritability is within the normal range for natural animal populations. The finding of biologically significant levels of heritability in a population with abnormally low allozyme heterozygosity illustrates the point that low levels of allozyme heterozygosity should not be taken as an indication of overall lack of genetic variation in important quantitative characters such as life-history traits. Genetic variation required for adaptation of species to future environmental challenges can exist despite low levels of enzyme heterozygosity.     

Characterization of microbial communities from coastal waters using microarrays

Molecular methods, including DNA probes, were used to identify and enumerate pathogenic Vibrio species in the Chesapeake Bay; our data indicated that Vibrio vulnificus exhibits seasonal fluctuations in number. Our work included a characterization of total microbial communities from the Bay; development of microarrays that identify and quantify the diversity of those communities; and observation of temporal changes in those communities. To identify members of the microbial community, we amplified the 16S rDNA gene from community DNA isolated from a biofilm sample collected from the Chesapeake Bay in February, 2000. The resultant 75 sequences were 95% or more similar to 7 species including two recently described Shewanella species, baltica and frigidimarina, that have not been previously isolated from the Chesapeake. When the genera of bacteria from biofilm after culturing are compared to those detected by subcloning amplified 16S fragments from community DNA, the cultured sample exhibited a strong bias. In oysters collected in February, the most common bacteria were previously unknown. Based on our 16S findings, we are developing microarrays to detect these and other microbial species in these estuarine communities. The microarrays will detect each species using four distinct loci, with the multiple loci serving as an internal control. The accuracy of the microarray will be measured using sentinel species such as Aeromonas species, Escherichia coli, and Vibrio vulnificus. Using microarrays, it should be possible to determine the annual fluctuations of bacterial species (culturable and non-culturable, pathogenic and non-pathogenic). The data may be applied to understanding patterns of environmental change; assessing the health of the Bay; and evaluating the risk of human illness associated with exposure to and ingestion of water and shellfish.     

Radon level in dwellings and its correlation with uranium and radium content in some areas of Himachal Pradesh,India

LR- 115 plastic track detectors have been used to measure indoor radon level in some dwellings of Una district, Himachal Pradesh, India. The annual average radon concentration in dwellings in most of the villages falls in the range of the action level recommended by the International Commission on Radiological Protection. The radon values in some of the dwellings exceed the action level and may be unsafe from the health hazard point of view. The indoor radon values are in general higher in winter than in summer. Uranium, radium and radon exhalation studies have also been carried out in soil samples collected from these areas. A good correlation is obtained between uranium concentration in the soil and indoor radon in dwellings. The soil radon exhalation rate also correlates with the uranium concentration in soil.     

Environmental radon studies using solid state nuclear track detectors

The results of radon activity recorded in 70 dwellings of Nurpur area, Kangra district, Himachal Pradesh, India are reported. LR-115 Type 2 films in the bare mode were exposed for four seasons of three months each covering a period of one year for the measurement of indoor radon levels. The calibration constant of 0.020 tracks cm(-2) d(-1) per Bq m(-3) has been used to express radon activity in Bq m(-3). The annual average indoor radon concentrations in 17 different villages of the area are found to vary from 168+/-46 to 429+/-71. Most of the indoor radon values lie in the range of action levels (200-600 Bq m(-3)) recommended by International Commission on Radiological Protection.     

Subsurface nutrient modelling using finite element model under Boro rice cropping system

Boro rice, an emerging low-risk crop variety of rice, cultivated using residual or stored water after Kharif season. To enhance the quality and production of rice, potassium (K) and phosphorus (P) are the common constituents of agricultural fertilizers. However, excess application of fertilizers causes leaching of nutrients and contaminates the groundwater system. Therefore, assessment and optimization of fertilizer dose are needed for better management of fertilizers. Towards this, the present study determines the path, persistence, and mobility of K and P under the Boro rice cropping system. The experimental site consisted of four plots having Boro rice with four different fertilizer doses of nitrogen (N), P, K viz. 100%, 75%, 50%, and 25% of the recommended dose. Disturbed soil samples were analysed for K and P from pre-sown land to tillering stage at 0–5, 5–10, 10–15, 15–30, 30–45, and 45–60 cm depths. Simultaneously, K and available P were also simulated in the subsurface soil layers through the HYDRUS-1D model. The statistical comparisons were made with RMSER, E, and PBIAS between the modelled values and laboratory-measured values. Although, the results showed that all the treatments considered had agreeable simulations for both K and P, the K simulations were found to be better as compared to P simulations except for 25% where P simulations outperformed K. The simulated concentration at all doses was found most appropriate when measured for the subsurface layers (up to 45 cm), while showed an underestimation in the bottom layers (45–60 cm) of soil.

     

Identification and elucidation of anthropogenic source contribution in PM10 pollutant: Insight gain from dispersion and receptor models

Source apportionment study of PM₁₀ (Particulate Matter) in a critically polluted area of Jharia coalfield, India has been carried out using Dispersion model, Principle Component Analysis (PCA) and Chemical Mass Balance (CMB) techniques. Dispersion model Atmospheric Dispersion Model (AERMOD) was introduced to simplify the complexity of sources in Jharia coalfield. PCA and CMB analysis indicates that monitoring stations near the mining area were mainly affected by the emission from open coal mining and its associated activities such as coal transportation, loading and unloading of coal. Mine fire emission also contributed a considerable amount of particulate matters in monitoring stations. Locations in the city area were mostly affected by vehicular, Liquid Petroleum Gas (LPG) & Diesel Generator (DG) set emissions, residential, and commercial activities. The experimental data sampling and their analysis could aid understanding how dispersion based model technique along with receptor model based concept can be strategically used for quantitative analysis of Natural and Anthropogenic sources of PM₁₀.