Detection and Phylogenetic Analysis of the Hepatitis E Virus in a Canadian Swine Production Network

Viral contamination along the production chain is a significant concern in both food safety and livestock health. Pigs have been reported to act as a reservoir for zoonotic viruses, sometimes emerging ones, and epidemiological studies have shown direct links between the consumption of uncooked pork offal and cases of hepatitis caused by the hepatitis E virus (HEV) genotype 3 in humans. The presence of HEV in swine herds has been reported, but its dissemination in pork production environments is still unknown. To investigate viral contamination sources in the swine industry, 452 environment and fecal samples, including samples from livestock transportation vehicles, were collected over a period of 11 months from ten farms and one slaughterhouse that together represent a single production network. Hepatitis E virus RNA was detected by nested RT-PCR in 32 samples from both inside and outside farm buildings, on trucks, and, mostly, from fomites collected in the slaughterhouse yard, such as on a utility vehicle. Phylogenetic analysis showed a wide diversity of HEV genotype 3 strains, similar to human and swine strains previously found. According to the results of this study, the movements of trucks and utility vehicles might play an important role in HEV dissemination on a slaughterhouse site and throughout an entire network.     

Trade-offs and performances of a range of alternative global climate architectures for post-2012

Quantitative assessments help to highlight the main features of climate policies by better identifying their strengths and weaknesses. In this study, we develop a grading system for assessing thirteen proposals for post-2012 climate policy. We believe that these proposals contain appropriate policy instruments which will be considered for discussions about how to design the post-2012 climate agreement. Our grades are based on four criteria: environmental effectiveness, cost effectiveness, distributional considerations and institutional feasibility. We analyze the grades with two complementary methods: principal component and cluster analysis. Our results entail three policy implications. Firstly, the higher the number of policy instruments a proposal comprises, the more difficult might be its implementation. Secondly, proposals which include a meaningful effort by the U.S. tend to fail in environmental effectiveness and institutional feasibility. Thirdly, we identify that the “first best” and the “second best” approaches belong to a stable policy group, and both may be considered as suitable candidates for post-2012 climate policy.     

Contribution of Pendant Ester Group Hydrolysis to the Erosion of Acrylic Polymers in Binders Aimed at Organotin-Free Antifouling Paints

Specific polymeric material applications as bioactive molecules delivery systems involve a strictly controlled degradation of polymer matrixes. One possibility to obtain a zero-order kinetic for small molecules release consists in a simple hydrolysis of ester groups contained in the macromolecular structure. The chemical degradation can lead to the continuous surface erosion of the formulated resins without loss of their mechanical properties and to a permanent activity of the delivery systems. Hydrolysis is a very well-known reaction in the case of organic molecules containing ester groups. The mechanism seems to be more complicated when ester groups are located in macromolecular structures. With the aim of antifouling applications, acrylic acid polymers bearing lateral ester groups of different chemical structures (hydrophilic, hydrophobic, hydrolyzable) have been prepared, characterized, and immersed in water, at pH 8, and their hydrolysis has been studied. Experimental data display two parameters, at least, which must be taken into account: the reactivity of the ester groups toward hydrolysis and the hydrophilic/hydrophobic balance of the polymer. The susceptibility of the acrylic polymers to hydrolysis has been compared to the erosion characteristics of the corresponding films. The results confirm that hydrolysis is necessary to obtain a regular degradation of the films without loss of mechanical properties. A relationship has been observed between the characteristics of hydrolysis and erosion for each studied polymer.     

Numerical study of coastal sandbar migration, by hydro-morphodynamical coupling

We present a numerical model based on the hydro-morphodynamical coupling to study coastal sandbar migration. In order to improve both nonlinear and dispersive wave processes in relatively shallow water, we developed a finite element model based on the Legendre polynomials and on the Extended Boussinesq model. This model reproduces the propagation of wave trains with a high degree of accuracy on a greater range of depths than the standard Boussinesq models. We also implemented the Total Variation Diminishing schemes to improve the quality of the computed hydrodynamic fields, especially in areas where sharp flow gradients occurred. The coupled morpho-hydrodynamical model is then used to simulate the migration of real sandbars observed at Rousty beach (Mediterranean French coast). For verification the model results are compared with field measurements obtained from a small-scale field campaign carried out over two years at Rousty beach, and the results of this comparison are thoroughly discussed and analyzed.     

One-year monitoring survey of organic compounds (PAHs, PCBs, TBT), heavy metals and biomarkers in blue mussels from the Arcachon Bay, France

Marine mussels Mytilus sp. were transplanted on a monthly basis in cages over one year to oyster farms and harbours in the Arcachon Bay (France) in order to assess the water quality of the bay. Contaminant levels (organotin compounds, trace metals, PCBs and PAHs) were measured in tissues of transplanted mussels and mussels from a reference station, along with physiological parameters of the mussels (condition indexes, lipid content and dry weight). Four biomarkers (AChE: acetylcholinesterase activity, GST: gluthathione S-transferase activity, CAT: catalase activity and TBARS: thiobarbituric acid-reactive substance content) were also monitored. The remote stations monitored (oyster parks) exhibited no accumulation pattern of pollutants. Their respective concentrations therefore constitute a background level of the contamination in the bay ([TBT]= 30 ng Sn g(-1) dw, [SigmaHAPs]= 100 ng g(-1) dw, [SigmaPCBs]= 35 ng g(-1) dw). The elevated chemical contamination of the largest harbour of the bay, the Arcachon harbour, can be interpreted in terms of persistence of organotin compounds ([SigmaOTs]= 1500-2000 ng Sn g(-1) dw) and PAHs ([SigmaHAPs]= 4500-5000 ng g(-1) dw) in sediments and, to a lesser extent, of direct inputs of copper ([Cu]= 20 microg g(-1) dw in harbours versus 7 in oyster parks) and petrogenic PAHs ([methylphenanthrenes]= 1600 ng g(-1) dw in the dockyard versus 170 at the gas stations), related to the use of copper-based antifouling paints and to dockyard activity, respectively. However, the Arcachon Bay presents a low contamination level by PCBs and metals, including harbour stations. Furthermore, higher levels of other PAHs (particularly alkyl PAHs such as methylphenanthrenes/1600 ng g(-1) dw) not included in the 16 PAHs from the EPA priority list (usually studied in biomonitoring programmes/1500 ng g(-1) dw) in the Arcachon harbour underline the need to integrate these compounds in biomonitoring of highly PAH-polluted areas such as harbours in order to avoid misinterpretation of the biological responses observed. Biomarker responses were not able to discriminate the different chemical contamination levels recorded in the Arcachon Bay and rather reflected changes in environmental factors. Furthermore, the strong intraspecies variability of biological responses could be due to genetic differences of mussels from the Arcachon Bay. It is the first time that such an integrated monitoring is performed in the Arcachon Bay, also taking into account seasonal variations of chemical contents and biomarkers levels in mussel tissues.     

Cement/clay interactions-- a review: experiments, natural analogues, and modeling

The concept of storing radioactive waste in geological formations calls for large quantities of concrete that will be in contact with the clay material of the engineered barriers as well as with the geological formation. France, Switzerland and Belgium are studying the option of clayey geological formations. The clay and cement media have very contrasted chemistries that will interact and lead to a degradation of both types of material. The purpose of this review is to establish an exhaustive list of laboratory experiments so as to identify the reaction sequences in the evolution of both the clay minerals and accessory minerals during their alteration in an alkaline environment. We review the data on clay dissolution kinetics in this environment, and include an invaluable study of natural analogues that allow one to correlate the phenomena in time. The available data and experiments make it possible to construct predictive numerical models. However, as the quality of the data is inhomogeneous, we recommend a continuation of the thermodynamic and kinetic data acquisition. It is obvious that the numerical modeling of the alkaline disturbance will be more relevant if it can combine the advantages of the different detailed models: mineralogical completeness, combined modeling of the clay and cement media, evolution of the porosity, consideration of the pCO2 and all the surface reactions.     

Nitrogen removal in valley bottom wetlands: assessment in headwater catchments distributed throughout a large basin

Although the reduction of nutrient loading between uplands and streams is sometimes considered evidence of the effect of wetlands acting as buffer zones, the influence of valley bottom wetlands (VBWs) on NO(3)(-) loading has seldom been assessed at the catchment scale. The objective of this study was to quantify the impact of VBWs on NO(3)(-) concentrations in streams in the Brittany region of France. We analyzed the spatial variation in NO(3)-N concentrations in 18 headwater catchments located in a 400-km(2) basin, with varying topographic, climatic, and agricultural intensity conditions. Approximately every 10 d, water was sampled during the high flow season. We investigated the relationships between the mean NO(3)(-) concentration and different characteristics of the catchments: (i) the amount of effective rainfall, i.e., the combined effect of precipitation and actual evapotranspiration on discharge and chemical dilution, (ii) the intensity of farming, i.e., the area used for farming in the catchments and the surplus of the agricultural N budget, and (iii) the relative area of VBWs. Although the first two characteristics were the main factors controlling N concentration variability, a step-by-step regression allowed us to attribute a significant part of the NO(3)(-) concentration decrease to the increase of VBW area in each catchment. For an increase of VBW area from 11 to 16%, the NO(3)-N concentration decreased from 5.3 to 4.2 mg L(-1). Therefore in this basin, VBWs reduced the NO(3)(-) concentrations in streams with sources in agricultural fields by 30%. This work demonstrates the contribution of natural VBWs to NO(3)(-) removal at the catchment scale compared to other sources of variation, which is a current need for integrating water quality criteria into wetland management.     

Experimental exposure of juvenile savannah monitors (Varanus exanthematicus) to an environmentally relevant mixture of three contaminants: effects and accumulation in tissues

Using varanids as indicators of pollution in African continental wetlands was previously proposed. The present study aimed at understanding experimentally how monitors absorb and accumulate pollutants and how they are affected. The relevance of non-destructive sampling was also evaluated. Savannah monitors (Varanus exanthematicus) were orally exposed during 6 months to a mixture of lead, 4,4′-dichlorodiphenyltrichloroethane (4,4′-DDT) and chlorpyrifos-ethyl (CPF) or to the vehicle only. Proportionally to their mass, exposed monitors received the same dose: 20 then 10 mg lead?kg^?1, 2 then 0.5 mg CPF?kg^?1 and 4 mg 4,4′-DDT?kg^?1. Individuals surviving contamination were euthanized after 4 or 6 months of experiment. Tissues were analysed for lead by atomic absorption spectrophotometry and for DDT and CPF by gas chromatography. Exposed monitors absorbed all three pollutants but only lead (essentially in bone, tail tips and phalanxes) and 4,4′-DDT plus its main metabolites (essentially in fat and liver) accumulated. CPF killed ten individuals. Clear correlations occurred between the total quantity of lead or 4,4′-DDT administered and concentrations in tissues. Tail tips and skin samples are recommended non-destructive indicators for lead and organochlorine pesticides contamination, respectively. This work confirms that monitors can be used as relevant indicators of environmental pollution by lead and organochlorine pesticides. Although varanids withstand heavy lead and DDT contamination, our results suggest that CPF can be lethal at very low doses to the herpetofauna and emphasize the importance of considering all taxa in impact assessment studies, including reptiles.     

An investigation of the origin and mobility of phosphorus in freshwater sediments from Bort-Les-Orgues Reservoir, France

In order to assess the origin and the potential mobility of phosphorus (P) in the sediment of the Bort-Les-Orgues Reservoir, France, two sequential extraction schemes, i.e., the SMT (modified Williams method) and the Golterman schemes, were compared. Finally, the potential mobility of P in this sediment was estimated from results of sequential extraction. The SMT method appeared to be more satisfactory than the Golterman method, which is in accordance with results from a study currently carried out in the framework of the European programme Standards, Measurements and Testing. Iron-bound P and organic P were the dominant forms of P in the sediment; these forms are likely to be released at the sediment/water interface in case of anoxia and could diffuse into the water column, thus increasing the risk of eutrophication in this sensitive reservoir. The P stock (330 +/- 66 t) is not negligible and should be taken into account in any restoration project of the reservoir. The SMT procedure seems promising and will provide, in the near future, a valuable tool for water managers in the field of lake restoration.