Introduced and cryptogenic species in Port Phillip Bay, Victoria, Australia

Port Phillip Bay (PPB) is a large (1,930 km²), temperate embayment in southern Victoria, Australia. Extensive bay-wide surveys of PPB have occurred since 1840. In 1995/1996 the Commonwealth Scientific and Industrial Research Organization (CSIRO) Centre for Research on Introduced Marine Pests (CRIMP) undertook an intensive evaluation of the region with the aims of developing a comprehensive species list of native and introduced biota and contrasting previous bay-wide assessments with a current field survey in order to detect new incursions and discern alterations to native communities. Two methods were used to meet these aims: a re-evaluation of regional museum collections and published research in PPB to identify and determine the timing of introductions; and field surveys for benthic (infauna, epifauna and encrusting) organisms between September 1995 to March 1996. One hundred and sixty introduced (99) and cryptogenic (61) species were identified representing over 13% of the recorded species of PPB. As expected, the majority of these are concentrated around the shipping ports of Geelong and Melbourne. Invasions within PPB appear to be increasing, possibly due to an increase in modern shipping traffic and an increase in aquaculture (historically associated with incidental introductions); however the records of extensive biological surveys suggest that this may, in part, be an artefact of sampling effort. In contrast to Northern Hemisphere studies, PPB (and Southern Hemisphere introductions in general) have significantly different suites of successfully invading taxa. PPB is presented as one of the most invaded marine ecosystems in the Southern Hemisphere.Communicated by M.S. Johnson, Crawley     

A comparison of different lysis buffers to assess allele dropout from single cells for preimplantation genetic diagnosis

Single cell polymerase chain reaction (PCR) for preimplantation genetic diagnosis (PGD) requires high efficiency and accuracy. Allele dropout (ADO), the random amplification failure of one of the two parental alleles, remains the most significant problem in PCR-based PGD testing since it can result in serious misdiagnosis for compound heterozygous or autosomal dominant conditions. A number of different strategies (including the use of lysis buffers to break down the cell and make the DNA accessible) have been employed to combat ADO with varying degrees of success, yet there is still no consensus among PGD centres over which lysis buffer should be used (ESHRE PGD Consortium, 1999 ). To address this issue, PCR amplification of three genes (CFTR, LAMA3 and PKP1) at different chromosomal loci was investigated. Single lymphocytes from individuals heterozygous for mutations within each of the three genes were collected and lysed in either alkaline lysis buffer (ALB) or proteinase K/SDS lysis buffer (PK). PCR amplification efficiencies were comparable between alkaline lysis and proteinase K lysis for PCR products spanning each of the three mutated loci (ΔF508 in CFTR 90% vs 88%; R650X in LAMA3 82% vs 78%; and Y71X in PKP1 91% vs 87%). While there was no appreciable difference between ADO rates between the two lysis buffers for the LAMA3 PCR product (25% vs 26%), there were significant differences in ADO rates between ALB and PK for the CFTR PCR product (0% vs 23%) and the PKP1 PCR product (8% vs 56%). Based on these results, we are currently using ALB in preference to PK/SDS buffer for the lysis of cells in clinical PGD. Copyright © 2001 John Wiley & Sons, Ltd.     

Attitudes towards sex selection for non-medical reasons: a review

Early non-invasive fetal sexing is widely available over the Internet, leading to concerns about its possible use for sex selection. The aim of this review is to summarise the results of surveys describing lay attitudes towards sex selection for non-medical reasons to help address or inform such concerns. A search of electronic databases and key journals was supplemented by an Internet search and citation-tracking. Twenty-one quantitative studies were identified. Most were conducted in the US, with five recent studies in the UK and Germany. Most studies found that, overall, people were not in favour of sex selection. However, this varied from 94 to 18%. People may hold more negative attitudes when the method of sex selection is specified, particularly if this involves termination of pregnancy (TOP). Attitudes towards the general availability of sex selection are less negative than those towards personal use. Attitudes were consistently negative in German surveys. Little is known of such attitudes outside the US, the UK and Germany, and how such attitudes may change as new sex selection technologies become available. Studies of use of early non-invasive fetal sexing for sex selection for non-medical reasons are needed to assess the extent to which concerns about usage are justified and to assist in debates on how these might be most appropriately addressed. Copyright © 2006 John Wiley & Sons, Ltd.     

Dissolved and Total Copper in a Coal Ash Effluent and Receiving Stream: Assessment of In Situ Biological Effects

An in situ chemical and biological study was conducted in the lower Muskingum River (southeast Ohio, U.S.A.) to evaluate potential effects of copper (Cu) discharged from a coal ash effluent. Effluent total Cu, dissolved Cu, TSS and pH measurements were performed monthly during January-December 1995. Benthic macroinvertebrates were sampled at five river locations using artificial substrate samplers, and in situ Cu analyses were conducted. Effluent Cu (total) ranged from 8 to 142 microg L(-1) (mean = 58 microg L(-1)), but dissolved Cu never exceeded 78 microg L(-1) (mean = 20 microg L(-1)). The mean ratio of dissolved Cu to total Cu in these samples was 32%. Total Cu concentrations at the biological sampling sites adjacent to the effluent discharge were higher than levels at ambient sites, but dissolved Cu levels were similar among all sites. The macroinvertebrate community proximal to the coal ash effluent had the highest number of taxa and total number of individuals; a high number of mayfly and caddis fly taxa; and the highest Invertebrate Community Index score. The high water velocity of the discharge (which likely contained particulate organic matter) apparently created a favorable microhabitat that, combined with Cu-complexing constituents in the discharge, superceded potential adverse effects of high Cu levels. This study emphasizes the importance of instream biological data when obtained in conjunction with chemical analyses.     

A Simulation of Temporal and Spatial Variations in Carbon at Landscape Level: A Case Study for Lake Abitibi Model Forest in Ontario,Canada

Using a case study of the Lake Abitibi Model Forest (LAMF), this study aims to assess the temporal and spatial variability in carbon storage during 1990–2000, and to present a comprehensive estimation of the carbon budget for LAMF's ecosystems. As well, it provided the information needed by local forest managers to develop ecological and carbon-based indicators and monitor the sustainability of forest ecosystems. Temporal and spatial carbon dynamics were simulated at the landscape level using ecosystem model TRIPLEX1.0 and Geographical Information System (GIS). The simulated net primary productivity (NPP) and carbon storage in forest biomass and soil were compared with field data and results from other studies for Canada's boreal forests. The results show that simulated NPP ranged from 3.26 to 3.34 tC ha⁻¹ yr⁻¹ in the 1990s and was consistent with the range measured during the Boreal Ecosystem-Atmosphere Studies (BOREAS) in central Canada. Modeled NPP was also compared with the estimation from remote sensing data. The density of total above-and belowground biomass was 125.3, 111.8, and 106.5 tC ha⁻¹ for black spruce, trembling aspen, and jack pine in the LAMF ecosystem, respectively. The total carbon density of forested land was estimated at 154.4 tC ha⁻¹ with the proportion of 4:6 for total biomass and soil. The analysis of net carbon balance of ecosystem suggested that the LAMF forest ecosystem was acting as a carbon sink with an allowable harvest in the 1990s.     

A framework to assess regional environmental impacts of dedicated energy crop production

Numerous studies have evaluated air quality and greenhouse gas mitigation benefits of biomass energy systems, but the potential environmental impacts associated with large-scale changes in land-use patterns needed to produce energy crops have not been quantified. This paper presents a framework to assess the potential soil, water, and biodiversity impacts that may result from the large-scale production of dedicated energy crops. The framework incorporates producer economic decision models with environmental models to assess changes in land use patterns and to quantify the consequent environmental impacts. Economic and policy issues that will affect decisions to produce energy crops are discussed. The framework is used to evaluate erosion and chemical runoff in two Tennessee regions. The analysis shows that production of dedicated energy crops in place of conventional crops will significantly reduce erosion and chemical runoff.     

Improving the Urban Stream Restoration Effort: Identifying Critical Form and Processes Relationships

Stream restoration projects are often based on morphological form or stream type and, as a result, there needs to be a clear tie established between form and function of the stream. An examination of the literature identifies numerous relationships in naturally forming streams that link morphologic form and stream processes. Urban stream restoration designs often work around infrastructure and incorporate bank stabilization and grade control structures. Because of these imposed constraints and highly altered hydrologic and sediment discharge regimens, the design of urban channel projects is rather unclear. In this paper, we examine the state of the art in relationships between form and processes, the strengths and weaknesses of these existing relationships, and the current lack of understanding in applying these relationships in the urban environment. In particular, we identify relationships that are critical to urban stream restoration projects and provide recommendations for future research into how this information can be used to improve urban stream restoration design. It is also suggested that improving the success of urban restoration projects requires further investigation into incorporating process-based methodologies, which can potentially reduce ambiguity in the design and the necessity of using an abundant amount of in-stream structures.     

Risk of polycyclic aromatic hydrocarbon (PAH) exposure from ingested food: the Azerbaijan case study

Risks due to polycyclic aromatic hydrocarbons (PAHs) exposure from food consumption for the population of Azerbaijan were determined using deterministic and probabilistic methods. The guidelines and methods described and presented in the United States Environmental Protection Agency (U.S. EPA) Risk Assessment Guidance for Superfund (RAGS) Part A was used in performing the risk assessments. The current study utilized concentration data from different sources representing international studies performed over the past decade to determine those food products that contribute the most exposure to PAHs through ingestion for the Azeri population. Due to lack of concentration data from middle-Eastern countries, only European countries were considered and used for this analysis. Using the benzo[a]pyrene (BaP) toxicity equivalency factors (TEFs) to adjust the concentrations of the individual PAH compounds to BaP equivalent concentrations, risk analyses were performed. Deterministic risk estimates fell within probabilistic risk estimates. Child risks were consistently four to seven times higher in magnitude than adult risks. Risk potentials determined for the food exposure pathway were also determined to be up to ten times higher in magnitude than risks determined from exposures due to other pathways such as soil contamination. It was observed that three major factors contributed to the variability in the assessment results, which were child and adult body weights, consumption rates of the different food groups, and the variances of the input data. The most prevalent pathways of PAH exposure from the dietary patterns of the Azerbaijani population were determined to be from bread and bakery products, milk and dairy products, and egg products.     

Percentile estimation using variable censored data

Much progress has been made in recent years to address the estimation of summary statistics, using data that are subject to censoring of results that fall below the limit of detection (LOD) for the measuring instrument. Truncated data methods (e.g., Tobit regression) and multiple-imputation are two approaches for analyzing data results that are below the LOD. To apply these methods requires an assumption about the underlying distribution of the data. Because the log-normal distribution has been shown to fit many data sets obtained from environmental measurements, the common practice is to assume that measurements of environmental factors can be described by log-normal distributions. This article describes methods for obtaining estimates of percentiles and their associated confidence intervals when the results are log-normal and a fraction of the results are below the LOD. We present limited simulations to demonstrate the bias of the proposed estimates and the coverage probability of their associated confidence intervals. Estimation methods are used to generate summary statistics for 2,3,7,8-tetrachloro dibenzo-p-dioxin (2,3,7,8-TCDD) using data from a 2001 background exposure study in which PCDDs/PCDFs/cPCBs in human blood serum were measured in a Louisiana population. Because the congener measurements used in this study were subject to variable LODs, we also present simulation results to demonstrate the effect of variable LODs on the multiple-imputation process.