Automated sizing,counting and identification of zooplankton by pattern recognition

A computerized system was developed to automate the analysis of zooplankton samples. Classification to major taxonomic group was based on discriminant analysis of morphological features. Images were generated either from preserved organisms or from silhouette photographs. The latter technique simplified large-scale sample storage. Accuracy of correct classification, among organisms regularly occurring in New England coastal waters, exceeded 90%. Critical problems were due to limitations inherent to the imaging of low contrast, randomly oriented objects by a vidicon camera. One solution would utilize an incoherent-to-coherent transducer in a binocular field of observation through which plankton entrained in a flowing medium passed.This work was supported in part by NOAA grant NA80AA-4 00023     

Amino acid uptake and respiration by marine heterotrophs

The concentration and turnover of dissolved free amino acids were measured in samples from 25 and 100 m on three occasions at a station 6 miles off the California (USA) coast. Individual amino acid concentrations varied from undetectable (<0.05 g/l) to 3 g/l, the total amino acid concentration from 1.8 to 8.5 g/l. The greater concentration of total amino acids was always found at 25 m. The predominant amino acids were serine, lysine, aspartate, glutamate and alanine; reliable analyses could not be made for glycine because of a high blank. For the 10 individual amino acids studied, the rate of heterotrophic turnover ranged from undetectable to 1.2 g/l day^-1; serine, aspartate, alanine and glutamate showed the highest rates. In samples from 25 m, the rates were 15 to 20 times higher than those taken from 100 m. The total calculated flux of the amino acids studied varied from 0.015 to 3.2 g/l day^-1 and amounted to 1–10% of photosynthetic carbon dioxide fixation.     

Recent Invasions of the Gulf of Maine: Three Contrasting Ecological Histories

Introduced species are common members of estuarine communities where their role as competitors and predators is of concern, This paper examines the invasion of Gulf of Maine benthic habitats by the ecologically similar alien invertebrates Styela clava, Botrylloides diegensis , and Membranipora membranacea .
Styela clava increased slowly in abundance at study sites in Beverly, Massachusetts and Portsmouth, New Hampshire. We found no evidence of competitive dominance by S. clava , even though it is the competitive dominant in similar habitats elsewhere. Botrylloides diegensis rapidly became a dominant species after its arrival in the Great Bay Estuary, but this dominance was short-lived. B. diegensis persists in the estuary as an early colonist of primary space and as an epibiont on secondary substrates in established communities. Membranipora membranacea became the dominant epiphyte on laminarian kelps within two years. Although M. membranacea overgrew the native epiphytes Obelia geniculata and Electra pilosa in the overwhelming majority of encounters these native species are more common on other algal hosts. Therefore, competitive dominance is not likely a factor in the successful invasion of the Gulf of Maine by M. membranacea .
These species provide evidence for opposing views of the role of competition in mediating community invasion. We show that ecological similarity among species is not an accurate criterion to predict either the mechanism of invasion or the means of persistence. In addition, these data indicate that biological invasions must be examined on broad spatial and temporal scales; short-term or narrowly focused studies can lead to incorrect conclusions.     

The growing role of web‐based geospatial technology in disaster response and support

This paper examines changes in disaster response and relief efforts and recent web‐based geospatial technological developments through an evaluation of the experiences of the Center for Geographic Analysis, Harvard University, of the Sichuan (2008) and Haiti (2010) earthquake responses. This paper outlines how conventional GIS (geographic information systems) disaster responses by governmental agencies and relief response organisations and the means for geospatial data‐sharing have been transformed into a more dynamic, more transparent, and decentralised form with a wide participation. It begins by reviewing briefly at historical changes in the employment of geospatial technologies in major devastating disasters, including the Sichuan and Haiti earthquakes (case studies for our geospatial portal project). It goes on to assess changes in the available dataset type and in geospatial disaster responders, as well as the impact of geospatial technological changes on disaster relief effort. Finally, the paper discusses lessons learned from recent responses and offers some thoughts for future development.     

Extinction rate of discovered and undiscovered plants in Singapore

Extinction is a key issue in the assessment of global biodiversity. However, many extinction rate measures do not account for species that went extinct before they could be discovered. The highly developed island city–state of Singapore has one of the best-documented tropical floras in the world. This allowed us to estimate the total rate of floristic extinctions in Singapore since 1822 after accounting for sampling effort and crypto extinctions by collating herbaria records. Our database comprised 34,224 specimens from 2076 native species, of which 464 species (22%) were considered nationally extinct. We assumed that undiscovered species had the same annual per-species extinction rates as discovered species and that no undiscovered species remained extant. With classical and Bayesian algorithms, we estimated that 304 (95% confidence interval, 213–414) and 412 (95% credible interval, 313–534) additional species went extinct before they could be discovered, respectively; corresponding total extinction rate estimates were 32% and 35% (range 30–38%). We detected violations of our 2 assumptions that could cause our extinction estimates, particularly the absolute numbers, to be biased downward. Thus, our estimates should be treated as lower bounds. Our results illustrate the possible magnitudes of plant extirpations that can be expected in the tropics as development continues.     

Modification of the feeding behavior of marine copepods by sub-lethal concentrations of water-accommodated fuel oil

The feeding behaviors of Acartia clausi and A. tonsa were measured in samples of water containing low levels of a water-accommodated fraction of No. 2 fuel oil. The copepods fed normally at a hydrocarbon concentration of 70 g l^-1, but their feeding behavior was altered both quantitatively and qualitatively at a concentration of 250 g l^-1. Three types of response to the higher oil level were found. The first was total suppression of feeding. Both other types involved suppression of feeding on particles between 7 and 15 m diameter, but one showed no change in the ingestion of larger particles, whereas the other displayed increased feeding on particles larger than 15 m diameter. These results suggest that the species of Acartia studied use three different modes of feeding, each on a different size range of particulate material. Low-level hydrocarbon pollution affects each feeding mode differently.Contribution No. 973, Center for Environmental and Estuarine Studies of the University of Maryland     

Numerical Investigation of Boundary-Layer Evolution and Nocturnal Low-Level Jets: Local versus Non-Local PBL Schemes

Numerical simulations of the evolution of the planetary boundary layer (PBL) and nocturnal low-level jets (LLJ) have been carried out using MM5 (version 3.3) with four-dimensional data assimilation (FDDA) for a high pollution episode in the northeastern United States during July 15–20, 1999. In this paper, we assess the impact of different parameterizations on the PBL evolution with two schemes: the Blackadar PBL, a hybrid local (stable regime) and non-local (convective regime) mixing scheme; and the Gayno–Seaman PBL, a turbulent kinetic energy (TKE)-based eddy diffusion scheme. No FDDA was applied within the PBL to evaluate the ability of the two schemes to reproduce the PBL structure and its temporal variation. The restriction of the application of FDDA to the atmosphere above the PBL or the lowest 8 model levels, whichever is higher, has significantly improved the predicted strength and timing of the LLJ during the night. A systematic analysis of the PBL evolution has been performed for the primary meteorological fields (temperature, specific humidity, horizontal winds) and for the derived parameters such as the PBL height, virtual potential temperature, relative humidity, and cloud cover fraction. There are substantial differences between the PBL structures and evolutions simulated by these two different schemes. The model results were compared with independent observations (that were not used in FDDA) measured by aircraft, RASS and wind profiler, lidar, and tethered balloon platforms during the summer of 1999 as part of the NorthEast Oxidant and Particle Study (NE-OPS). The observations tend to support the non-local mixing mechanism better than the layer-to-layer eddy diffusion in the convective PBL.     

Release of photoassimilated carbon as dissolved organic matter by marine phytoplankton

The release of photoassimilated carbon as dissolved organic matter was studied in situ in oligotrophic and eutrophic marine waters and in axenic laboratory cultures. Percentage extracellular release (PER), integrated for the trophogenic zone, ranged from 6 to 12% in eutrophic waters and from 17 to 27% in oligotrophic seas. Most of the algal cultures released low amounts of dissolved organic matter (5%) during exponential growth. The highest levels of PER were observed in surface and deep samples, possibly as a result of elevated photorespiration and senescent cells. The generally lower values for extracellular release reported in this work as compared to other studies may be partly due to improved experimental techniques which minimized previously encountered artifacts.