The quantitative real-time PCR applications in the monitoring of marine harmful algal bloom (HAB) species

In the last decade, various molecular methods (e.g., fluorescent hybridization assay, sandwich hybridization assay, automatized biosensor detection, real-time PCR assay) have been developed and implemented for accurate and specific identification and estimation of marine toxic microalgal species. This review focuses on the recent quantitative real-time PCR (qrt-PCR) technology developed for the control and monitoring of the most important taxonomic phytoplankton groups producing biotoxins with relevant negative impact on human health, the marine environment, and related economic activities. The high specificity and sensitivity of the qrt-PCR methods determined by the adequate choice of the genomic target gene, nucleic acid purification protocol, quantification through the standard curve, and type of chemical detection method make them highly efficient and therefore applicable to harmful algal bloom phenomena. Recent development of qrt-PCR-based assays using the target gene of toxins, such as saxitoxin compounds, has allowed more precise quantification of toxigenic species (i.e., Alexandrium catenella) abundance. These studies focus only on toxin-producing species in the marine environment. Therefore, qrt-PCR technology seems to offer the advantages of understanding the ecology of harmful algal bloom species and facilitating the management of their outbreaks.     

Extent and variation of sound enhancement inside burrows of the frog Eupsophus emiliopugini (Leptodactylidae)

Variation of the amplification effect of burrows of the leptodactylid frog Eupsophus emiliopugini on conspecific calls generated externally was investigated. Advertisement calls broadcast through a loudspeaker placed in the vicinity of a burrow were monitored with small microphones positioned inside and outside the cavity. For 150 presentations of calls of 15 individuals in 12 burrows, 134 were amplified and 16 were attenuated (range –6–13 dB). The fundamental resonant frequency of burrows, measured with broadcast noise and pure tones, averaged 814 Hz (range 302–1361 Hz) and covaried with burrow length. The dominant frequency of the calls of burrow occupants (average 1062 Hz, range 636–1459 Hz) was not correlated with the fundamental resonant frequency of these cavities. In burrows with low resonant frequencies, externally broadcast calls with high dominant frequencies were attenuated, or amplified to a lower extent than calls with lower dominant frequencies. The dominant frequencies of the calls experienced shifts towards the burrows’ fundamental resonant frequencies. The amplification of calls inside burrows of E. emiliopugini exhibits manifest variability, with considerable potential for facilitating acoustic interactions in this species. Received: 18 July 1999 / Received in revised form: 19 July 1999 / Accepted: 25 July 1999     

Halopriming imparts tolerance to salt and PEG induced drought stress in sugarcane

Sugarcane, a glycophyte grown in the tropical and subtropical regions, is frequently subjected to soil salinity, affecting the yield and quality of the harvest. The ameliorative efficiency of salt priming on emergence and plantlet growth was examined in sugarcane cultivars which are known to vary in salt tolerance under field conditions. Salt priming with NaCl (100 mM) improved both the percent and rate of germination of the sets of the tolerant (Co 62175) and moderately tolerant (CoM 265) varieties compared to sensitive (CoC 671) and test variety (Co 86032). Salt priming during germination also improved the growth performance of two-month-old sugarcane plants in terms of shoot length, shoot and root fresh weight when subjected to 15 day iso-osmotic (−0.7 MPa) NaCl (150 mM) or polyethylene glycol (PEG 8000; 20%, w/v) stress. The primed plants exhibited lower salt- and dehydration-induced leaf senescence. The results suggest salt priming as an efficient approach for imparting abiotic stress tolerance in sugarcane.     

When signal meets noise: immunity of the frog ear to interference

Sound stimulates the tympanic membrane (TM) of anuran amphibians through multiple, poorly understood pathways. It is conceivable that interactions between the internal and external inputs to the TM contribute to the nonlinear effects that noise is known to produce at higher levels of the auditory pathway. To explore this issue, we conducted measurements of TM vibration in response to tones in the presence of noise in the frog Eupsophus calcaratus. Laser vibrometry revealed that the power spectra (n = 16) of the TM velocity in response to pure tones at a constant level of 80 dB sound-pressure level (SPL) had a maximum centered at an average frequency of 2,344 Hz (range 1,700–2,990 Hz) and a maximum velocity of 61.1 dB re 1 μm/s (range 42.9–66.6 dB re 1 μm/s). These TM-vibration velocity response profiles in the presence of increasing levels of 4-kHz band-pass noise were unaltered up to noise levels of 90 dB SPL. For the relatively low spectral densities of the noise used, the TM remains in its linear range. Such vibration patterns facilitate the detection of tonal signals in noise at the tympanic membrane and may underlie the remarkable vocal responsiveness maintained by males of E. calcaratus under noise interference.     

“Winter” aggregations, colony cycle, and seasonal phenotypic change in the paper wasp Polistes versicolor in subtropical Brazil

Social wasps from temperate zones have clear annual colony cycles, and the young queens hibernate during winter. In the subtropics, the only previously reported evidence for the existence of “hibernation” is the facultative winter aggregations of females during harsh climate conditions. As in temperate-zone species analyzed so far, we show in this study that in the paper wasp, Polistes versicolor, a subtropical species, body size increases as an unfavorable season approaches. Our morphological studies indicate that larger females come from winter aggregations—that is, they are new queens. Multivariate analyses indicate that size is the only variable analyzed that shows a relationship to the differences. Given the absence of a harsh climate, we suggest that the occurrence of winter aggregations in tropical P. versicolor functions to allow some females to wait for better environmental conditions to start a new nest, rather than all being obliged to start a new nest as soon as they emerge.     

Effect of heat stress on polyamine content and protein pattern in Skeletonema costatum

In the present paper we investigated the polyamine content and protein expression pattern in laboratory-reared Skeletonema costatum (Grev.) Cleve under temperature stress conditions. Putrescine, spermidine and to a lesser extent spermine were present in this alga. Free putrescine and spermidine increased after heat shock while a concomitant decrease in trichloroacetic acid (TCA)-soluble bound putrescine and spermidine occurred. After 40 min of 30 °C stress both were no longer detectable, whereas TCA-soluble bound spermine was present. The appearance of 83, 42, 40.7 and 35 kDa polypeptides was observed when S. costatum cells were subjected to heat treatment. Western blotting experiments revealed the presence in this diatom of ubiquitin and ubiquitin conjugates. Heat stress strongly increased the number of ubiquitin conjugate polypeptides of high molecular weight. No variation in the carbohydrate content was observed in response to stress. A possible role for these different metabolic events in the adaptive response of S. costatum to rapid temperature shifts has been hypothesized.     

Potential environmental factors influencing mucilage formation in the northern Adriatic Sea

In the northern Adriatic Sea, Mediterranean Sea, the mucilage phenomenon is usually related to the aggregation of extracellular organic matter of phytoplanktonic origin under special seasonal and trophic conditions. Environmental factors, such as temperature, salinity, nitrogen, phosphorus and N/P ratio as well as polysaccharide and monosaccharide levels in the presence and absence of mucilage were investigated in the northern Adriatic Sea. Variations in temperature and salinity during spring in years characterised by mucilage events have been recognised having an important role in preparing a favourable physical environment where mucilage formation could take place. Since the DIN/TP ratio increased markedly during the spring months (March–April) in 2002, 2003 and 2004, preceding the early summer mucilage outbreaks, it appeared that the DIN/TP ratio may be a more robust predictor than the DIN/DIP ratio, which, although more commonly used, exhibited a discontinuous trend. The contents of total carbohydrates, including monosaccharides and polysaccharides, in seawater also varied according to the presence or absence of mucilage, with an increase of polysaccharide levels during the late spring or early summer in the period of the mucilage appearance. The role of carbohydrates in the macro-aggregate formation was also investigated.     

Strong responsiveness to noise interference in an anuran from the southern temperate forest

Animals adopt different strategies to communicate by means of sound in noisy environments. Some animals increase, while others decrease, their vocal activity in the presence of interference. Anuran amphibians from diverse latitudes exhibit both kinds of responses. Recent studies have shown that males of Batrachyla taeniata and Batrachyla antartandica from the temperate austral forest do not call in response to the presentation of advertisement calls of sympatric congeneric species, but their responsiveness to other kinds of interference has not been tested. To explore the diversity in responsiveness to acoustic intrusion in a single species, we exposed males of B. taeniata to prolonged prerecorded natural abiotic noises of wind, creek, and rain and to a band-pass noise centered at 2,000 Hz, at 67 dB sound pressure level (SPL). The subjects drastically increased their call rate when exposed to all four sounds. Frogs also responded by augmenting their vocal activity to exposures of band-pass noise at increasing intensities (55–79 dB SPL). The increase in vocal activity in response to noise is strong relative to those of other anurans from the temperate forest studied previously under similar exposures. These results reveal a remarkable activation of vocal response to acoustic interference of continuous abiotic noise, which would allow compensating for limitations in the active communication space under background sounds. This strategy contrasts with the decrease in vocal output amid interference from heterospecific signals reported formerly for this frog, a tactic that would restrict energy expenditure to relevant acoustic competition with conspecifics.     

Effects of fluvial instability on the bed morphology in vegetated channels

Environmental Fluid Mechanics - Flume experiments are conducted to investigate the effect of streambed instability in channels with randomly-distributed vegetation, varying vegetation density and...