Temporal variability of airborne bacterial community structure in an urban area

Temporal airborne bacterial genetic community structure and meteorological factors were analysed above an urban area in the northwest of France from December 2003 to April 2004 with a sampling strategy considering different time intervals (from an hour to a month). Principal component analysis (PCA) of B-ARISA (Bacterial-Automated Ribosomal Intergenic Spacer Analysis) profiles revealed a hierarchy in the temporal variability of bacterial community: daily<weekly<seasonal. Co-inertia analysis between B-ARISA data and meteorological factors demonstrated the correlation between the seasonal variability in the bacterial community and climatic conditions such as temperature and relative humidity, whereas daily and weekly variability seemed likely to be managed by other factors such as anthropogenic activities.     

Correction to: Impact of biogas digestates on soil microbiota in agriculture: a review

Environmental Chemistry Letters -     

Bioacoustic distances between the begging calls of brood parasites and their host species: a comparison of metrics and techniques

A variety of bioacoustics distance metrics have been used to assess similarities in the vocalizations of different individuals. Here, we provide a detailed analysis of several acoustic similarity indices, some of which have been developed with the specific aim of characterizing the sensory coding of auditory stimuli. We compare different approaches through the analysis of begging calls of several passerine species and specialist brood parasitic cuckoos that putatively evolved to mimic their hosts. The different bioacoustics distances did not provide consistently correlated similarity patterns, implying that they are sensitive to different sound features. However, the encoded spectrogram alignment method was correlated with all other acoustic distance metrics, suggesting that this method provides a consistent approach to use when the perceptually salient sound parameters are unknown for a particular species. Our analyses confirm that statistical similarity of begging calls can be detected in a New Zealand pair of host and specialist parasite species. We also show detectable similarity in two other Australasian host–parasite pairs and another New Zealand system, but to a more limited extent. By examining phylogenetic patterns in the begging call diversity, we also confirm that specialist cuckoos have evolved to mimic the begging calls of their hosts but host species have not co-evolved to modify their calls in response to begging call similarity by the parasite. Our results illustrate that understanding the function and mechanism of behavioral copying and mimicry requires statistically consistent measures of similarity that are related to both the physical aspects of the particular display and the sensory basis of its perception.     

Soil microbial diversity and C turnover modified by tillage and cropping in Laos tropical grassland

Agricultural practices should modify the diversity of soil microbes. However, the precise relationships between soil properties and microbial diversity are poorly known. Here, we study the effect of agricultural management on soil microbial diversity and C turnover in tropical grassland of north-eastern Laos. Three years after native grassland conversion into agricultural land, we compared soils from five land use management systems: one till versus two no-till rotational cropping systems, one no-till improved pasture and the natural grassland. Soils were incubated in microcosms during 64 days at optimum temperature and humidity. Bacterial and fungal diversity were evaluated by metagenomic 454-pyrosequencing of 16S and 18SrRNA genes, respectively. Changes in soil respiration patterns were evaluated by monitoring ¹²C- and ¹³C-CO₂ release after soil amendment with 13C-labelled wheat residues. Results show that residue mineralization increased with bacterial richness and diversity in the tilled treatment 7 days after soil amendment. Native soil organic C mineralization and priming effect increased with fungal richness and diversity in improved pasture and natural grassland. No-till cropping systems represented intermediate situations between tillage and pasture systems. Our findings evidence the potential of controlling soil microbial diversity by agricultural practices to improve soil biological properties. We suggest the promotion of no-till systems as a fair compromise between the need for agriculture intensification and soil ecological processes preservation.     

Biodiversity of urban soils for sustainable cities

The last century was marked by a high demographic revolution and the fast development of urban environments. Now, more than 50% of the world’s 7.5 billion humans live in cities. This change has often induced the degradation of environmental quality in urban areas. As a consequence, management policies are now fostering the ‘return of nature’ in cities, which, in turn, is requiring a better understanding of the ecology of urban environments. In particular, there is a need for a better knowledge on soil management because soils provide many functions in cities such as urban agriculture. Optimizing the diversity of soil-living organisms is essential to many environmental functions such as water depollution, biochemical cycles, fertility and carbon storage. However, few studies on the biological quality of urban soils have been performed so far. This article reviews actual knowledge on soil biological quality for urban management. The definition of urban soils is discussed, and we present services provided by soils. We also review modern methods and techniques to assess the biological quality of urban soils. Last, we suggest communication means to improve the consideration of soil quality in urban planning policies aimed at sustainable cities.     

Impact of biogas digestates on soil microbiota in agriculture: a review

Environmental Chemistry Letters - The global production of biogas has increased threefold during the last decade to partly replace fossil fuels, yet biogas production by anaerobic digestion...