Adaptation to climate change and freshwater resources in Vusama village,Viti Levu,Fiji

Regional Environmental Change - Changing precipitation patterns including more intense and prolonged dry periods have become a growing concern for people living in the Pacific Island region. People...     

Development and implementation of eco-genomic tools for aquatic ecosystem biomonitoring: the SYNAQUA French-Swiss program

The effectiveness of environmental protection measures is based on the early identification and diagnosis of anthropogenic pressures. Similarly, restoration actions require precise monitoring of changes in the ecological quality of ecosystems, in order to highlight their effectiveness. Monitoring the ecological quality relies on bioindicators, which are organisms revealing the pressures exerted on the environment through the composition of their communities. Their implementation, based on the morphological identification of species, is expensive because it requires time and experts in taxonomy. Recent genomic tools should provide access to reliable and high-throughput environmental monitoring by directly inferring the composition of bioindicators’ communities from their DNA (metabarcoding). The French-Swiss program SYNAQUA (INTERREG France-Switzerland 2017–2019) proposes to use and validate the tools of environmental genomic for biomonitoring and aims ultimately at their implementation in the regulatory bio-surveillance. SYNAQUA will test the metabarcoding approach focusing on two bioindicators, diatoms, and aquatic oligochaetes, which are used in freshwater biomonitoring in France and Switzerland. To go towards the renewal of current biomonitoring practices, SYNAQUA will (1) bring together different actors: scientists, environmental managers, consulting firms, and biotechnological companies, (2) apply this approach on a large scale to demonstrate its relevance, (3) propose robust and reliable tools, and (4) raise public awareness and train the various actors likely to use these new tools. Biomonitoring approaches based on such environmental genomic tools should address the European need for reliable, higher-throughput monitoring to improve the protection of aquatic environments under multiple pressures, guide their restoration, and follow their evolution.     

Non-invasive fetal genotyping for maternal alleles with droplet digital PCR: A comparative study of analytical approaches

Objectives

To develop a flexible droplet digital PCR (ddPCR) workflow to perform non-invasive prenatal diagnosis via relative mutation dosage (RMD) for maternal pathogenic variants with a range of inheritance patterns, and to compare the accuracy of multiple analytical approaches.

Methods

Cell free DNA (cfDNA) was tested from 124 archived maternal plasma samples: 88 cases for sickle cell disease and 36 for rare Mendelian conditions. Three analytical methods were compared: sequential probability ratio testing (SPRT), Bayesian and z-score analyses.

Results

The SPRT, Bayesian and z-score analyses performed similarly well with correct prediction rates of 96%, 97% and 98%, respectively. However, there were high rates of inconclusive results for each cohort, particularly for z-score analysis which was 31% overall. Two samples were incorrectly classified by all three analytical methods; a false negative result predicted for a fetus affected with sickle cell disease and a false positive result predicting the presence of an X-linked IDS variant in an unaffected fetus.

Conclusions

ddPCR can be applied to RMD for diverse conditions and inheritance patterns, but all methods carry a small risk of erroneous results. Further evaluation is required both to reduce the rate of inconclusive results and explore discordant results in more detail.     

Abdominopelvic injuries due to road traffic accidents: Characteristics in a registry of 162,695 victims

Objective: Road traffic accidents (RTAs) are the first cause of abdominopelvic injuries (APIs). The objective of this study was to describe the characteristics and severity of APIs due to traffic accidents in a large French trauma registry and to identify risk factors for API.

Methods: All victims from the French Rhône registry of victims of RTAs were analyzed from 1996 to 2013. This registry contained data that were issued over a 20-year period from 245 medical departments, from prehospital care until re-adaptation, and forensic medicine departments. All APIs, defined as an injury between the diaphragm and the pelvic bone, were extracted and studied.

Results: Among 162,695 victims, 10,165 had an API (6.7%). Accidents frequently involved young men and 2 cars. Mean Injury Severity Score (ISS) was 8.7. Mortality rate was 5.6%. Soft tissue injuries largely predominated (n = 6,388; 54.4% of patients). Overall, 2,322 victims had a pelvic bone injury. Internal abdominal organs were involved in 2,425 patients; the most frequent were the spleen, liver, and kidney. Wearing of the seat belt appeared to be a significant protective factor in API, including serious injuries. A partial analysis over the past 2 years among the most severe patients hospitalized in the intensive care unit indicated that nonoperative management was carried out in two thirds of the wounded. In uni- or multivariate analysis, sex, age, type of user, antagonist, time of occurrence, associated severe lesions, or wearing of the seat belt were statistically associated with the occurrence of API, highlighting a more dangerous user profile.

Conclusions: Abdominopelvic injuries concern a minority of road traffic injuries, but they are responsible for significant mortality. Large solid organs are the most frequently affected. Women drivers wearing a seat belt and driving in town during the day appear to be more protected against API.     

Social network analysis and valid Markov chain Monte Carlo tests of null models

Analyses of animal social networks derived from group-based associations often rely on randomisation methods developed in ecology (Manly, Ecology 76:1109–1115, 1995) and made available to the animal behaviour community through implementation of a pair-wise swapping algorithm by Bejder et al. (Anim Behav 56:719–725, 1998). We report a correctable flaw in this method and point the reader to a wider literature on the subject of null models in the ecology literature. We illustrate the importance of correcting the method using a toy network and use it to make a preliminary analysis of a network of associations among eagle rays.

Courtship and reproduction in<Emphasis Type="Italic"> Carybdea sivickisi</Emphasis> (Cnidaria: Cubozoa)

Courtship and fertilization events in cubozoans have received little attention from biologists, and much of what we know about these processes is based on conjecture or scant anecdotal evidence. I set out to describe these processes in the cubozoan Carybdea sivickisi by observing mature medusae in vitro. Mature adults engage in courtship during which spermatophores are transferred from the male to the female, who then inserts the gametes into her manubrium. Females accepted multiple spermatophores from multiple males, and only produced one embryo strand. This study also provides evidence that the presence of conspicuous velar spots on the females bell margin is a signal of sexual maturity, and that sexual maturity was not reached in either sex until individuals had a bell diameter of at least 5 mm.Communicated by R.J. Thompson, St. Johns     

Recovery of insular seabird populations years after rodent eradication

Seabirds have been particularly affected by invasive non-native species, which has led to the implementation of numerous eradication campaigns for the conservation of these keystone and highly vulnerable species. Although the benefits of eradication of invasive non-native species for seabird conservation have been demonstrated, the recovery kinetics of different seabird populations on islands after eradication remains poorly evaluated. We conducted long-term monitoring of the number of breeding pairs of seven seabird species on a small atoll, Surprise Island, New Caledonia (southwestern tropical Pacific). Marine avifauna of the island were surveyed yearly 4 years before to 4 years after rodent eradication (conducted in 2005), and we conducted multiple one-time surveys from ∼10 years before and ∼15 years after eradication. We sought to determine how different seabird species responded to the eradication of invasive rodents in an insular environment. Three species responded positively (two- to 10-fold increase in population size) to eradication with differences in lag time and sensitivity. The number of breeding pairs increased (effect sizes = 0.49–0.95 and 0.35–0.52) for two species over 4 years post-eradication due to immigration. One species had a longer (at least 5 years) response time than all others; breeding pairs increased for over 10 years after eradication. Long-term sampling was necessary to observe the responses of the seabird populations on the island because of the delayed response of a species to eradication not visible in the first years after eradication. Our results confirmed the positive effects of eradication of invasive non-native species on seabirds and emphasize the importance of mid- and long-term pre- and posteradication surveys to decipher the mechanisms of seabird recovery and confirm the benefits of eradication for conservation purposes.