Preimplantation genetic diagnosis of the fragile X syndrome by use of linked polymorphic markers

Fragile X syndrome is the most common cause of familial mental retardation. The most common mutation is expansion of a triplet (CGG)_n repeat in the 5′ untranslated region of the FMR1 gene on Xq27.3. The expansion is refractory to PCR due to preferential amplification of the smaller allele in heterozygous cells and the high GC content of the repeat and surrounding sequences. Direct detection of the normal parental alleles in preimplantation embryos has been used for preimplantation genetic diagnosis (PGD) of this disorder. However, this approach is only suitable for approximately 63% of couples due to the heterozygosity of the repeat in the normal population. As an alternative we investigated the use of polymorphic markers flanking the mutation to track the normal and premutation carrying maternal chromosomes in preimplantation embryos. Using a panel of 11 polymorphisms, six (CA)_n repeats and five single nucleotide polymorphisms, diagnosis was developed for 90% of referred couples. Multiplex amplification of informative markers was tested in 300 single buccal cells from interested couples with efficiency and allele drop out (ADO) rates ranging from 69% to 96% and 6% to 18%, respectively. Use of this approach is accurate and applicable to a larger number of patients at risk of transmitting fragile X to their offspring. Copyright © 2001 John Wiley & Sons, Ltd.     

Epidemiologic Analysis of Factors Associated with Local Disappearances of Native Ranid Frogs in Arizona

Abstract:  We examined factors that may independently or synergistically contribute to amphibian population declines. We used epidemiologic case–control methodology to sample and analyze a large database developed and maintained by the Arizona Game and Fish Department that describes historical and currently known ranid frog localities in Arizona, U.S.A. Sites with historical documentation of target ranid species ( n = 324) were evaluated to identify locations where frogs had disappeared during the study period (case sites) and locations where frog populations persisted (control sites). Between 1986 and 2003, 117 (36%) of the 324 sites became case sites, of which 105 were used in the analyses. An equal number of control sites were sampled to control for the effects of time. Risk factors, or predictor variables, were defined from environmental data summarized during site surveys and geographic information system data layers. We evaluated risk factors with univariate and multifactorial logistic-regression analyses to derive odds ratios (OR). Odds for local population disappearance were significantly related to 4 factors in the multifactorial model. Disappearance of frog populations increased with increasing elevation (OR = 2.7 for every 500 m, p < 0.01). Sites where disappearances occurred were 4.3 times more likely to have other nearby sites that also experienced disappearances (OR = 4.3, p < 0.01), whereas the odds of disappearance were 6.7 times less (OR = 0.15, p < 0.01) when there was a source population nearby. Sites with disappearances were 2.6 times more likely to have introduced crayfish than were control sites (OR = 2.6, p = 0.04). The identification of factors associated with frog disappearances increases understanding of declines occurring in natural populations and aids in conservation efforts to reestablish and protect native ranids by identifying and prioritizing implicated threats.     

Prenatal diagnosis of Apert syndrome: report of two cases

Two de novo cases with Apert Syndrome detected prenatally are presented herein. In the first, fetal ultrasound findings of syndactyly of the hands, craniosynostosis and proptosis resulted in a prenatal diagnosis in the nineteenth week of gestation. This is the earliest prenatal diagnosis of this syndrome in a not-at-risk case. Following counseling, this pregnancy was terminated and subsequent pathological examination and DNA analysis confirmed the diagnosis of Apert Syndrome and coarctation of the aorta. In the second case, fetal ultrasound at 21 weeks' gestation revealed a hypoplastic left heart and clover-leaf skull. Following counseling, this pregnancy was also terminated. Further examination of the fetus and DNA analysis led to a diagnosis of Apert Syndrome. These cases emphasize the need to complete a thorough fetal ultrasound in cases with potentially lethal cardiac abnormality and the importance of incorporating a fetal pathologist, as well as a medical geneticist, in the investigations performed after delivery or pregnancy termination when a fetal abnormality is detected on ultrasound. Copyright © 2003 John Wiley & Sons, Ltd.     

A comparison of different lysis buffers to assess allele dropout from single cells for preimplantation genetic diagnosis

Single cell polymerase chain reaction (PCR) for preimplantation genetic diagnosis (PGD) requires high efficiency and accuracy. Allele dropout (ADO), the random amplification failure of one of the two parental alleles, remains the most significant problem in PCR-based PGD testing since it can result in serious misdiagnosis for compound heterozygous or autosomal dominant conditions. A number of different strategies (including the use of lysis buffers to break down the cell and make the DNA accessible) have been employed to combat ADO with varying degrees of success, yet there is still no consensus among PGD centres over which lysis buffer should be used (ESHRE PGD Consortium, 1999 ). To address this issue, PCR amplification of three genes (CFTR, LAMA3 and PKP1) at different chromosomal loci was investigated. Single lymphocytes from individuals heterozygous for mutations within each of the three genes were collected and lysed in either alkaline lysis buffer (ALB) or proteinase K/SDS lysis buffer (PK). PCR amplification efficiencies were comparable between alkaline lysis and proteinase K lysis for PCR products spanning each of the three mutated loci (ΔF508 in CFTR 90% vs 88%; R650X in LAMA3 82% vs 78%; and Y71X in PKP1 91% vs 87%). While there was no appreciable difference between ADO rates between the two lysis buffers for the LAMA3 PCR product (25% vs 26%), there were significant differences in ADO rates between ALB and PK for the CFTR PCR product (0% vs 23%) and the PKP1 PCR product (8% vs 56%). Based on these results, we are currently using ALB in preference to PK/SDS buffer for the lysis of cells in clinical PGD. Copyright © 2001 John Wiley & Sons, Ltd.     

生态足迹影响因子的定量分析

人口的膨胀和人类工业化进程的加剧，使得人类向自然界获取越来越多的资源，同时向环境源源不断的输入废弃物，已经严重超过了自然生态系统的供给能力和环境容量，生态环境日益恶化，水土流失、草场退化、植被消亡、生物多样性锐减、全球变暖等情况已经严重到难以遏制的地步，危及到人类自身的生存。在和平与发展成为世界两大主题的今天，人们越来越关注可持续发展的问题。在现有资料的基础上，利用主成分分析方法，定量地讨论了中国各省（区市）1999年生态足迹大小与其影响因子间的关系。结果表明，生态足迹的大小是各省（区市）的大中型企业个数、全社会固定生产投资等众多因子共同作用的结果，其中总人口和GDP是生态足迹大小的主要影响因子，其因子载荷量分别达到了0.940和0.913。值得一提的是非农业人口与生态足迹的相关系数超过了农业人口，这说明由于消费模式和生活水平等的差异，非农业人口对生态足迹的影响大于农业人口对生态足迹的影响。在此基础上建立了生态足迹影响因子的多元线性回归模型，以期为生态足迹在进行区域可持续发展评价的方法上提供新的思路。     

中国可持续社会养老保险的综合评价体系和实证分析

我国可持续社会养老保险的综合评价指标体系包括四个层次和三级子系统，内容涉及养老保险人数、机构设置、基金管理和代际平衡四个子目标。应用因子分析模糊综合评价方法对我国1990-2001年养老保险建设状况进行评价，本文认为基金管理，行政管理和代际失衡是影响我国可持续养老保险发展的主要因素。     

Pitfalls in molecular diagnosis in a family with severe factor VII (FVII) deficiency—misdiagnosis by direct sequence analysis using a PCR product

Molecular diagnostic tests are becoming a routine analysis in many laboratories. These modern analyses are widely used in clinical medicine, forensic, genetic and prenatal diagnosis and also in preimplantation genetic diagnosis. The accuracy of analysis is highly dependent on the success achieved in minimising genotyping errors. The pitfalls in molecular diagnostic tests can be due to a simple technique such as the polymerase chain reaction (PCR) used universally. This technique is routinely used for its apparent accuracy, but it is also a well-known source of errors. We report an error introduced during PCR reaction that leads to a wrong sequence result and consequently to a ‘false’ molecular result in a next prenatal diagnosis in a family with severe factor VII (FVII) deficiency. This error was verified using an unsuitable primer design in a rich repetitive sequence of the FVII gene that leads to a false annealing and then to a wrong molecular diagnosis. It is essential to link closely molecular data with clinical and phenotype analysis in order to avoid false-negative or false-positive results, which is of great importance to diagnosis and molecular prevention. Copyright © 2003 John Wiley & Sons, Ltd.     

亚热带稻田土壤碳氮磷生态化学计量学特征

为了解稻田土壤中是否存在稳定的土壤有机碳(C)、氮(N)和磷(P)比值,基于亚热带区110个水稻土剖面和587个发生层的土壤调查数据库,在区域尺度上分析了典型水稻土C∶N∶P比值的生态化学计量学特征,并应用相关分析和冗余分析,研究水稻土C∶N∶P比值与土壤-环境因子(地形和母质、土壤发生层、土壤类型和土壤理化性质)的关系.结果显示,亚热带区稻田土壤C∶N、C∶P和N∶P的剖面加权平均值分别为12. 6、49和3. 9,C∶N∶P为38∶3. 2∶1.不同母质起源、不同土壤亚类和不同发生层的水稻土C∶N变异相对较小;但C∶P和N∶P的变异很大,两者均值也远低于全球(186和13. 1)和中国土壤(136和9. 3)的C∶P和N∶P的平均水平.尽管稻田土壤剖面的C∶N∶P相对不稳定,但由于稻田表土生物与环境相互作用强烈,表土C∶N相对稳定(14. 2).这反映长期水耕熟化作用下,稻田表土中C和N仍存在紧密的耦合作用.然而,在稻田土壤剖面上,C∶P和N∶P并不稳定,SOC与全P含量、全N与全P含量也无显著相关性,表明环境变化可能导致土壤C∶N∶P解耦.地形、土壤质地、氧化铁和容重是调控稻田土壤剖面C∶N∶P的关键土壤环境因子.     

北京市农业机械排放因子与排放清单

利用车载排放测试技术对典型的联合收割机、拖拉机、农用运输车和农田建设机械实际工况下的尾气进行测试,建立了实际工况下农业机械的排放因子和2017年北京市农用机械排放清单.结果表明,不同的工作状态对农业机械尾气排放有较大的影响,怠速和行走时CO、NO_x、HC和PM排放趋于平稳;而切地和翻地模式下的波动较为明显.根据各类机械的分类和排放标准对排放因子进行细化,建立了较为完整的实际工况下的排放因子.根据农业机械排放因子和燃油消耗量计算出2017年北京市CO、NO_x、HC和PM的排放量分别是2 566.60、 1 239.29、 563.08和538.32 t.拖拉机、运输机械和联合收割机的污染物总量占CO、NO_x、HC和PM这4种污染物总量的98%、 95%、 95%和98%.因此,农用拖拉机、运输机械和联合收割机在农业机械污染减排中应作为重点控制对象.