Methanotrophic community structure of aged refuse and its capability for methane bio-oxidation

Aged refuse from waste landfills closed for eight years was examined and found to contain rich methanotrophs capable of biooxidation for methane. Specially, community structure and methane oxidation capability of methanotrophs in the aged refuse were studied. The amount of methanotrophs ranged 61.97 103–632.91 103 cells/g (in dry basis) in aged refuse from Shanghai Laogang Landfill. Type I and II methanotrophs were found in the aged refuse in the presence of sterilized sewage sludge and only Type I methanotrophs were detected in the presence of nitrate minimal salt medium (NMS). The clone sequences of the pmoA gene obtained from the aged refuse were similar to the pmoA gene of Methylobacter, Methylocaldum, and Methylocystis, and two clones were distinct with known genera of Type I methanotrophs according to phylogenetic analysis. Aged refuse enriched with NMS was used for methane biological oxidation and over 93% conversions were obtained.     

Arbuscular mycorrhizal fungal phylogenetic groups differ in affecting host plants along heavy metal levels

Arbuscular mycorrhizal fungi（AMF） are important components of soil microbial communities,and play important role in plant growth. However, the effects of AMF phylogenetic groups（Glomeraceae and non-Glomeraceae） on host plant under various heavy metal levels are not clear. Here we conducted a meta-analysis to compare symbiotic relationship between AMF phylogenetic groups（Glomeraceae and non-Glomeraceae） and host plant functional groups（herbs vs. trees, and non-legumes vs. legumes） at three heavy metal levels. In the meta-analysis, we calculate the effect size（ln（RR）） by taking the natural logarithm of the response ratio of inoculated to non-inoculated shoot biomass from each study. We found that the effect size of Glomeraceae increased, but the effect size of non-Glomeraceae decreased under high level of heavy metal compared to low level. According to the effect size, both Glomeraceae and non-Glomeraceae promoted host plant growth, but had different effects under various heavy metal levels. Glomeraceae provided more benefit to host plants than non-Glomeraceae did under heavy metal condition, while non-Glomeraceae provided more benefit to host plants than Glomeraceae did under no heavy metal. AMF phylogenetic groups also differed in promoting plant functional groups under various heavy metal levels.Interacting with Glomeraceae, herbs and legumes grew better than trees and non-legumes did under high heavy metal level, while trees and legumes grew better than herbs and non-legumes did under medium heavy metal level. Interacting with non-Glomeraceae, herbs and legumes grew better than trees and non-legumes did under no heavy metal. We suggested that the combination of legume with Glomeraceae could be a useful way in the remediation of heavy metal polluted environment.     

从不同反应器筛选、鉴别好氧反硝化菌

采用2个序批式反应器A和B,以硝态氮为唯一氮源,采用间歇曝气,以驯化、富集耐氧脱氮污泥.反应器A,其pH约为6.3,ρ(DO)为2.2～6.1 mg/L,碳氮比(ρ(C)/ρ(N),ρ(C)以ρ(COD_Cr)计)约为9;反应器B,其pH约为6.8～7.8,ρ(DO)为 2.2～3.0 mg/L,ρ(C)/ρ(N)约为15.2个反应器的ρ(NO₃－-N)均保持为80 mg/L.当2个反应器的总氮去除率达到60%以上,则认为完成好氧反硝化菌的富集.从2个反应器中共筛选得到20株BTB阳性菌,其中8株菌株的DNA样品经PCR成功扩增,进行16S rRNA测序.测序结果提交GenBank进行Blast同源性检索,并分析比对鉴别,判断8株菌株分属于假单胞菌(Pseudomonas),戴尔福特菌(Delftia),草螺菌(Herbaspirillum)和丛毛单胞菌(Comamonas)菌属.反硝化性能测定证实8株菌株均为好氧反硝化菌.      

自然土壤中苯酚降解菌的分离和系统发育分析

采用富集培养的方法,从未受苯酚污染的自然土壤中分离得到5株能以苯酚为唯一碳源生长的细菌.根据生理生化特性和系统发育分析对它们进行了初步鉴定,菌株PHD-2为Ralstonia sp.,菌株 PHD-4为Acinetobacter sp.,菌株PHD-5 为Microbacterium sp.,菌株PHD-1和PHD-3均为Pseudomonas sp.,16S rRNA基因序列的同源性比较和系统发育分析表明自然土壤中的苯酚降解菌具有丰富的多样性.     

一株反硝化菌的分离鉴定和系统发育分析

从反硝化反应器中分离到一株异养型兼氧反硝化细菌,命名为菌株JIN1,分离菌株为革兰氏染色阴性杆状。茵落颜色为乳白色。该菌株能以硝酸钠为唯一氮源进行反硝化作用并产生亚硝酸。部分长度的16SrDNA序列分析表明,分离菌株JIN1与Aquaspirillum菌具有99%相似,与Microvirgulaaerodenitrificans菌具有99%相似。其生化性状与Aquaspirillum菌不相符。系统发育学分析表明菌株JIN1与Microvirgulaaerodenitrificans菌关系最近。故确认菌株JIN1属Microvirgulaaerodenitrificans菌。     

城市生活污水及二级处理水中手足口病病毒及肠道病毒的赋存状态

手足口病是由多种肠道病毒引起的传染病,其主要病原体有EV71、CVA16及CVA10。为了研究污水处理厂的生活原污水及二级处理水中此类病毒的存活情况,实验利用手足口病3种主要病毒的通用引物对其进行分型检测,同时使用肠道病毒通用引物检测所有肠道病毒,并对常规水质指标进行分析。结果表明,原污水及二级处理水的手足口病病毒阳性率分别为83.3%与36.7%,而肠道病毒阳性率更高达100%及93.3%。说明生活污水中的肠道病毒可以稳定存在,且若未进行有效消毒处理,可能存在于二级处理水中。在3种手足口病主要病毒中,CVA10检出率最高,达45.0%,CVA16及EV71检出率分别为8.3%及10.0%。可推断,CVA10为实验阶段该地区主要的手足口病病毒。通过相关性分析,肠道病毒的存活与水质条件密切相关。     

一株高效脱硫脱氨氮菌的分离、鉴定及系统发育分析

从运行稳定的能同步脱臭的曝气生物滤池中采集样品,富集分离获得一株能高效脱硫脱氨氮的菌株TS-1。对分离菌株进行形态观察、生理生化试验及16S rRNA基因序列分析,结果表明,该菌株TS-1为革兰氏阳性菌,杆状;菌落在营养琼脂培养基上呈圆形,表面光滑,乳白色半透明;V-P试验阴性,能水解淀粉和明胶,利用柠檬酸盐生长;对菌株进行16S rRNA的PCR扩增,扩增产物测序结果表明分离菌株TS-1与巨大芽孢杆菌（Bacillus megaterium）同源性达到99%;以16S rRNA同源性为基础构建了包括24株相关种属细菌在内的系统发育树,在系统发育树中,分离菌株TS1与Bacillus megaterium在同一分支。结合形态观察、生理生化试验及16S rRNA基因序列分析结果,将其初步鉴定为巨大芽孢杆菌（Bacillus megaterium）。在常温（30±2）℃、转速为150 r/min的条件下,处理pH 7、S^2-和NH⁺₄-N分别为80 mg/L和88 mg/L的水样40 h,硫化物和氨氮的脱除率分别为91.8%和96.6%。     

稀有鮈鲫成体神经发生相关基因的分子克隆及序列分析

成体神经发生是脊椎动物中广泛存在的一种生物学特征。成体硬骨鱼类的脑展现出强烈的神经活性以及出色的脑修复能力,这使得硬骨鱼类成为研究成体神经发生和脑修复的一个理想的模型。本文克隆了成体稀有鮈鲫(Gobiocypris rarus)脑组织中神经发生及脑修复相关的hes5、pax6、sox11和prox1基因的部分c DNA序列并进行了序列分析。序列分析结果表明,pax6和sox11基因片段与斑马鱼(Danio rerio)对应的基因片段的同源性最高,分别为97%和94%;hes5基因与鲤鱼(Cyprinus carpio)相对应的基因片段的同源性最高,为92%;prox1基因在物种间的同源性最低。基于稀有鮈鲫和已知物种相应基因的核苷酸序列构建了系统发育树,发现稀有鮈鲫prox1基因与其他硬骨鱼类的亲缘关系最远。本文为进一步开展神经毒性类化学品对水生生物鱼类的成体神经毒性作用机制研究提供了分子生物学基础。     

接种不同污泥源条件下厌氧氨氧化菌的特性

2组ASBR接种污泥源分别为好氧硝化污泥、好氧硝化污泥和厌氧氨氧化污泥按2：1比例}昆合的混合污泥。在相同条件下,经过驯化培养均实现了厌氧氨氧化的稳定运行。接种好氧硝化污泥的反应器的适应期为29d,经过105d的培养反应器成功启动;接种混合污泥的反应器的适应期为13d,经过49d反应器启动成功。从2组ASBR污泥中提取细菌总DNA,经过厌氧氨氧化菌特异引物Pla46rc／Amx820对污泥样品进行PCR扩增、克隆和测序等分析。实验结果表明,接种不同污泥源条件下的反应器中厌氧氨氧化菌的特性存在差异,接种污泥源为好氧硝化污泥的反应器中存在的厌氧氨氧化菌种为CandidatusKuenenia,而接种混合污泥的反应器中存在的厌氧氨氧化菌种为CandidatusAnammox—oglobus,与最初接种的混合污泥中的厌氧氨氧化菌相同。当接种污泥中存在厌氧氨氧化菌时,该菌株经过长时间的驯化可成为优势菌种,而当接种污泥中无厌氧氨氧化菌存在时,CandidatusKueneniasp．可以在反应器中占主导,具有更强的竞争优势。     

固氮放线菌Frankia与放线菌根植物共生进化的研究进展

固氮放线菌Frankia是能够诱导大范围的放线菌根植物(actinorhizal plants)产生根瘤放线菌.放线菌根植物是植物受Frankia侵染后能够形成根瘤的植物[1].目前,它们之间的进化研究虽然取得了很大进展,但是仍然存在许多不清楚的东西.本文根据最近对植物和Frankia系统进化研究成果、根瘤中放线菌Frankia的多样性研究情况,综述放线菌根植物和共生Frankia进化的研究进展.