Preimplantation genetic diagnosis of the fragile X syndrome by use of linked polymorphic markers

Fragile X syndrome is the most common cause of familial mental retardation. The most common mutation is expansion of a triplet (CGG)_n repeat in the 5′ untranslated region of the FMR1 gene on Xq27.3. The expansion is refractory to PCR due to preferential amplification of the smaller allele in heterozygous cells and the high GC content of the repeat and surrounding sequences. Direct detection of the normal parental alleles in preimplantation embryos has been used for preimplantation genetic diagnosis (PGD) of this disorder. However, this approach is only suitable for approximately 63% of couples due to the heterozygosity of the repeat in the normal population. As an alternative we investigated the use of polymorphic markers flanking the mutation to track the normal and premutation carrying maternal chromosomes in preimplantation embryos. Using a panel of 11 polymorphisms, six (CA)_n repeats and five single nucleotide polymorphisms, diagnosis was developed for 90% of referred couples. Multiplex amplification of informative markers was tested in 300 single buccal cells from interested couples with efficiency and allele drop out (ADO) rates ranging from 69% to 96% and 6% to 18%, respectively. Use of this approach is accurate and applicable to a larger number of patients at risk of transmitting fragile X to their offspring. Copyright © 2001 John Wiley & Sons, Ltd.     

A comparison of different lysis buffers to assess allele dropout from single cells for preimplantation genetic diagnosis

Single cell polymerase chain reaction (PCR) for preimplantation genetic diagnosis (PGD) requires high efficiency and accuracy. Allele dropout (ADO), the random amplification failure of one of the two parental alleles, remains the most significant problem in PCR-based PGD testing since it can result in serious misdiagnosis for compound heterozygous or autosomal dominant conditions. A number of different strategies (including the use of lysis buffers to break down the cell and make the DNA accessible) have been employed to combat ADO with varying degrees of success, yet there is still no consensus among PGD centres over which lysis buffer should be used (ESHRE PGD Consortium, 1999 ). To address this issue, PCR amplification of three genes (CFTR, LAMA3 and PKP1) at different chromosomal loci was investigated. Single lymphocytes from individuals heterozygous for mutations within each of the three genes were collected and lysed in either alkaline lysis buffer (ALB) or proteinase K/SDS lysis buffer (PK). PCR amplification efficiencies were comparable between alkaline lysis and proteinase K lysis for PCR products spanning each of the three mutated loci (ΔF508 in CFTR 90% vs 88%; R650X in LAMA3 82% vs 78%; and Y71X in PKP1 91% vs 87%). While there was no appreciable difference between ADO rates between the two lysis buffers for the LAMA3 PCR product (25% vs 26%), there were significant differences in ADO rates between ALB and PK for the CFTR PCR product (0% vs 23%) and the PKP1 PCR product (8% vs 56%). Based on these results, we are currently using ALB in preference to PK/SDS buffer for the lysis of cells in clinical PGD. Copyright © 2001 John Wiley & Sons, Ltd.     

内质网应激在氟暴露致小鼠睾丸损伤中的作用

探讨了内质网应激在亚慢性氟暴露致小鼠睾丸损伤中的作用及分子机制.选用健康初断乳ICR雄性小鼠30只,随机分为对照组（C）、低氟组（LF）和高氟组（HF）,分别饮用自来水、5、30 mg·L^-1氟化钠水溶液90 d.亚慢性氟暴露结束后,以睾丸脏器系数、睾丸组织氧化/抗氧化酶和形态结构、精子质量、睾丸细胞凋亡、葡萄糖调节蛋白78（GRP78）、CCAAT/增强子结合蛋白同源蛋白（CHOP）、半胱氨酸天冬氨酸蛋白酶12（CASPASE-12）、半胱氨酸天冬氨酸蛋白酶3（CASPASE-3）为观测点.结果表明,与对照组比,LF组和HF组LDH、SOD、T-AOC活性下降,MDA含量上升,HF组GSH-PX活性下降,差异有统计学意义（p<0.05或p<0.01）;LF组可见细胞层次减少、间隙变大,成熟精子数量减少,HF组细胞溶解、层次紊乱,空泡化严重,少见成熟精子;LF组和HF组小鼠的精子活力降低,HF组小鼠精子数量下降,畸形率上升,差异有统计学意义（p<0.05或p<0.01）;LF组和HF组睾丸细胞凋亡指数上升,差异有统计学意义（p<0.01）;LF组和HF组Grp78、Caspase-12、Caspase-3基因表达水平上升,差异有统计学意义（p<0.05或p<0.01）.结果提示,除氧化应激以外,Caspase-12和Caspase-3基因表达异常可能是氟暴露致小鼠睾丸细胞凋亡异常的分子机制之一.     

石墨烯/聚苯胺修饰阴极对反硝化MFC性能影响

反硝化生物阴极微生物燃料电池（MFC）以电极为电子供体,在自养条件下完成硝酸盐去除过程.本研究以碳布（CC）为基底材料,分别制备获得还原氧化石墨烯修饰（rGO-CC）,聚苯胺修饰（PANI-CC）及二者复合修饰的CC电极（rGO/PANI-CC）,并考察其作为阴极材料对反硝化生物阴极MFC产电脱氮性能的影响.扫描电镜结果显示,rGO-CC和PANI-CC的碳纤维分别被片层状rGO和网状PANI覆盖,而rGO/PANI-CC表面呈现PANI在附着rGO的碳纤维上团聚的形貌,均增大了碳布的比表面积.循环伏安测试显示,rGO/PANI-CC具有最高的电化学活性.以rGO-CC,PANI-CC和rGO/PANI-CC为阴极构建MFC的产电能力分别提高了82%,24%和41%,其阴极对NO₃^--N的去除能力增强了23%,9%和13%.16S rDNA测序结果揭示修饰后电极表面微生物的多样性下降,Stappia和Pacacoccus属微生物的丰度增加.     

Body fluid analog chlorination: Application to the determination of disinfection byproduct formation kinetics in swimming pool water

Disinfection by-products(DBPs) are formed in swimming pools by the reactions of bather inputs with the disinfectant.Although a wide range of molecules has been identified within DBPs,only few kinetic rates have been reported.This study investigates the kinetics of chlorine consumption,chloroform formation and dichloroacetonitrile formation caused by human releases.Since the flux and main components of human inputs have been determined and formalized through Body Fluid Analogs(BFAs),it is possible to model the DBPs formation kinetics by studying a limited number of precursor molecules.For each parameter the individual contributions of BFA components have been quantified and kinetic rates have been determined,based on reaction mechanisms proposed in the literature.With a molar consumption of 4 mol Cl_2/mol,urea is confirmed as the major chlorine consumer in the BFA because of its high concentration in human releases.The higher reactivity of ammonia is however highlighted.Citric acid is responsible for most of the chloroform produced during BFA chlorination.Chloroform formation is relatively slow with a limiting rate constant determined at 5.50 × 10~(-3) L/mol/sec.L-histidine is the only precursor for dichloroacetonitrile in the BFA.This DBP is rapidly formed and its degradation by hydrolysis and by reaction with hypochlorite shortens its lifetime in the basin.Reaction rates of dichloroacetonitrile formation by L-histidine chlorination have been established based on the latest chlorination mechanisms proposed.Moreover,this study shows that the reactivity toward chlorine differs whether L-histidine is isolated or mixed with BFA components.     

Performance of different macrophytes in the decontamination of and electricity generation from swine wastewater via an integrated constructed wetland-microbial fuel cell process

Plants constitute a major element of constructed wetlands(CWs).In this study,a coupled system comprising an integrated vertical flow CW(IVCW) and a microbial fuel cell(MFC) for swine wastewater tre atment was developed to research the effects of macrophytes commonly employed in CWs,Canna indica,Acorus calamus,and Ipomoea aquatica,on decontamination and electricity production in the system.Because of the different root types and amounts of oxygen released by the roots,the rates of chemical oxygen demand(COD) and ammonium nitrogen(NH_4~+-N) removal from the swine wastewater differed as well.In the unplanted,Canna indica,Acorus calamus,and Ipomoea aquatica systems,the COD removal rates were 80.20%,88.07%,84.70%,and 82.20%,respectively,and the NH_4~+-N removal rates were 49.96%,75.02%,70.25%,and 68.47%,respectively.The decontamination capability of the Canna indica system was better than those of the other systems.The average output voltages were 520±42,715±20,660±27,and 752±26 mV for the unplanted,Canna indica,Acorus calamus,and Ipomoea aquatica systems,respectively,and the maximum power densities were 0.2230,0.4136,0.3614,and0.4964 W/m~3,respectively.Ipomoea aquatica had the largest effect on bioelectricity generation promotion.In addition,electrochemically active bacteria,Geobacter and Desulfuromonas,were detected in the anodic biofilm by high-throughput sequencing analysis,and Comamonas(Proteobacteria),which is widely found in MFCs,was also detected in the anodic biofilm.These results confirmed the important role of plants in IVCW-MFCs.     

Identification of potential electrotrophic microbial community in paddy soils by enrichment of microbial electrolysis cell biocathodes

Electrotrophs are microbes that can receive electrons directly from cathode in a microbial electrolysis cell (MEC). They not only participate in organic biosynthesis, but also be crucial in cathode-based bioremediation. However, little is known about the electrotrophic community in paddy soils. Here, the putative electrotrophs were enriched by cathodes of MECs constructed from five paddy soils with various properties using bicarbonate as an electron acceptor, and identified by 16S rRNA-gene based Illumina sequencing. The electrons were gradually consumed on the cathodes, and 25%–45% of which were recovered to reduce bicarbonate to acetic acid during MEC operation. Firmicutes was the dominant bacterial phylum on the cathodes, and Bacillus genus within this phylum was greatly enriched and was the most abundant population among the detected putative electrotrophs for almost all soils. Furthermore, several other members of Firmicutes and Proteobacteria may also participate in electrotrophic process in different soils. Soil pH, amorphous iron and electrical conductivity significantly influenced the putative electrotrophic bacterial community, which explained about 33.5% of the community structural variation. This study provides a basis for understanding the microbial diversity of putative electrotrophs in paddy soils, and highlights the importance of soil properties in shaping the community of putative electrotrophs.     

河北坝上与坝下不同土地利用类型土壤入渗特征及其影响因素

为查明河北省坝上与坝下不同土地利用类型土壤入渗能力,选择张北县（坝上风蚀区）和阳原县（坝下水蚀区）作为典型研究区,采用微型圆盘入渗仪测量土壤入渗特性,并分析其主要影响因素。研究结果表明：（1）阳原县不同土地利用类型土壤渗透性能表现为：高盖度草地>低盖度草地>耕地>林地,张北县表现为：草地>耕地>灌木林地>防护林地;（2）不同入渗模型拟合度之间存在显著差异,其中Philip模型拟合效果最佳;（3）土壤初始入渗速率、稳定入渗速率、稳定入渗时间与容重呈极显著负相关关系,而与总孔隙度均呈极显著正相关关系。结果表明,该区草地土壤入渗能力最强,后期开展生态工程建设时应更加重视草地涵养水源的作用。     

双区静电除尘器的数值模拟研究

采用数模拟的方法研究了双区静电除尘器内流场分布、颗粒荷电及颗粒运动等难以直接测量的物理过程,构建了双区静电除尘过程完整的数值模型.采用泊松方程、电流连续性方程和匀强电场方程描述电场,采用N-S方程和雷诺应力标准湍流模型描述流场,采用拉格朗日法描述颗粒运动轨迹.通过截面风速与颗粒去除率的模拟值与实验值的对比,验证了数值模型在模拟内部流场和颗粒运动时的准确性.数值模拟结果表明：双区静电除尘器内部流场分布对入口风速的变化非常敏感;颗粒荷电方式占比由颗粒粒径决定;荷电区内颗粒向极板的趋近过程由流体曳力和电场力共同完成,收尘区内的趋近过程则由电场力主导;入口流速通过改变颗粒前进速度和内部流场形态来影响颗粒运动轨迹.     

兰州市南山季节性土壤微生物特征及影响因素

为了探究不同季节和不同植被类型对土壤微生物分布的影响,以兰州市南山不同海拔的两种植被类型为研究对象,采用稀释涂布平板法测定了土壤微生物的季节动态变化特征.结果表明：研究区内细菌数量占微生物总数的96.22%~99.80%,远高于真菌和放线菌数量.土壤微生物类群随季节变化呈现明显差异,其总数整体表现为夏季最高,为89.22×10⁶cfu/g soil,分别是春、秋、冬季的12.02、3.28、2.74倍,其中夏季细菌数量最高,真菌与放线菌数量均在春季达到最大值.人工林样地土壤微生物数量略低于荒坡,环境因子中土壤含水量和有机碳含量高于荒坡.随着海拔的升高,pH值逐渐上升,土壤温度、有机碳与全氮含量逐渐下降,土壤微生物总数则呈现先减少后增加的趋势.相关分析表明,不同季节各微生物类群与环境因子的相关系数各有不同,春季放线菌与有机碳,秋季真菌与有机碳、全氮均呈极显著正相关（P<0.01）.冗余分析表明,环境因子中有机碳与第一物种轴的相关系数最高,为0.520,说明土壤有机碳含量是影响土壤微生物类群分布的主导因素.