Evaluation of phenanthrene toxicity on earthworm (Eisenia fetida): An ecotoxicoproteomics approach

The goal of this study was to identify promising new biomarkers of phenanthrene by identifying differentially expressed proteins in Eisenia fetida after exposure to phenanthrene. Extracts of earthworm epithelium collected at days 2, 7, 14, and 28 after phenanthrene exposure were analyzed by two dimensional electrophoresis (2-DE) and quantitative image analysis. Comparing the intensity of protein spots, 36 upregulated proteins and 45 downregulated proteins were found. Some of the downregulated and upregulated proteins were verified by MALDI-TOF/TOF-MS and database searching. Downregulated proteins in response to phenanthrene exposure were involved in glycolysis, energy metabolism, chaperones, proteolysis, protein folding and electron transport. In contrast, oxidation reduction, oxygen transport, defense systems response to pollutant, protein biosynthesis and fatty acid biosynthesis were upregulated in phenanthrene-treated E. fetida. In addition, ATP synthase b subunit, lysenin-related protein 2, lombricine kinase, glyceraldehyde 3-phosphate dehydrogenase, actinbinding protein, and extracellular globin-4 seem to be potential biomarkers since these biomarker were able to low levels (2.5 mg kg⁻¹) of phenanthrene. Our study provides a functional profile of the phenanthrene-responsive proteins in earthworms. The variable levels and trends in these spots could play a potential role as novel biomarkers for monitoring the levels of phenanthrene contamination in soil ecosystems.     

Fungal laccases: from structure-activity studies to environmental applications

Laccases are multicopper oxidases mainly secreted by filamentous fungi. Producing radical forms from organic substrates, they are involved in numerous reactions leading to the degradation and polymerization of xenobiotics. Our studies have led to a better knowledge of the structural, catalytic and genetic properties of laccases and allowed to develop a strategy for their evolution through genetic engineering. Here, we show that fungal laccases, wild or engineered, may be potent tools to develop bioremediation processes of soils polluted by organic compounds, and assays to assess the ecotoxicological impact of these pollutants on soil fungi.     

蛋白组学分析揭示出阿特拉津对非洲爪蟾的生殖毒性源于其诱导生殖细胞凋亡并干扰紧密连接蛋白和代谢相关信号通路

阿特拉津可对雄性脊椎动物生殖系统造成不良影响,但其中分子机制尚不明了。本文作者将非洲爪蟾(Xenopus laevis)暴露于100 ppb的阿特拉津120 d,利用同位素标记相对和绝对定量(iTRAQ)技术检测了非洲爪蟾睾丸和卵巢中蛋白图谱的变化,结果显示100 ppb阿特拉津可影响爪蟾发育,延迟和阻碍雄性细精管的形成。组学分析显示,睾丸中143种以及卵巢中121种蛋白均表达异常,这些蛋白与细胞凋亡、细胞间紧密连接以及代谢途径相关。
精选自Xiuping Chen, Jiamei Wang, Haojun Zhu, Jiatong Ding and Yufa Peng. Proteomics analysis of Xenopus laevis gonad tissue following chronic exposure to atrazine. Environmental Toxicology and Chemistry: Volume 34, Issue 8, pages 1744–1750, August 2015. DOI: 10.1002/etc.2980
详情请见http://onlinelibrary.wiley.com/doi/10.1002/etc.2980/full     

Proteomics study of Southern Punjab Pakistani cobra (Naja naja: formerly Naja naja karachiensis) venom

Because of the potential of significant geographic variation in the compositions of snake venoms, much insight can be gained by examining individuals originating from diverse locations, and detailed characterization of any species can only be done by including animals from the entire range. Pakistani N. naja (formerly N. naja karachiensis) venom was decomplexed by applying diverse techniques and found a concoction of proteins (a total of 43 venomous proteins comprising 11 super families) from 6 to 200 kilodaltons in size. Among them three finger toxins (58%), phosphoplipses A₂ (19%), snake venom metalloproteinases (5%), l-amino acid oxidases (5%), helvepryns (3%), vespryns (2%), cobra venom factor (2%), 5′-nucleotidases (2%), venom nerve growth factor (2%), and Kunitz type serine protease inhibitor (2%) were included. It is the first report that this venom possesses significantly higher percentage of three finger toxins belonging to the cytotoxins (32% overall) and α‐neurotoxins (32% overall, predominately long chain neurotoxins, 24% overall) compared to N. naja from other geographic locations. Better understanding of intraspecific variations in venom can improve the development of location-specific anti-venoms. Furthermore, this pool of diverse toxins could potentially be a source of novel drug candidates for the treatment of muscarinic acetylcholine receptors mediated nervous disorders.     

蛋白组学分析揭示出阿特拉津对非洲爪蟾的生殖毒性源于其诱导生殖细胞凋亡并干扰紧密连接蛋白和代谢相关信号通路

阿特拉津可对雄性脊椎动物生殖系统造成不良影响,但其中分子机制尚不明了。本文作者将非洲爪蟾(Xenopus laevis)暴露于100 ppb的阿特拉津120 d,利用同位素标记相对和绝对定量(iTRAQ)技术检测了非洲爪蟾睾丸和卵巢中蛋白图谱的变化,结果显示100 ppb阿特拉津可影响爪蟾发育,延迟和阻碍雄性细精管的形成。组学分析显示,睾丸中143种以及卵巢中121种蛋白均表达异常,这些蛋白与细胞凋亡、细胞间紧密连接以及代谢途径相关。
精选自Xiuping Chen, Jiamei Wang, Haojun Zhu, Jiatong Ding and Yufa Peng. Proteomics analysis of Xenopus laevis gonad tissue following chronic exposure to atrazine. Environmental Toxicology and Chemistry: Volume 34, Issue 8, pages 1744–1750, August 2015. DOI: 10.1002/etc.2980
详情请见http://onlinelibrary.wiley.com/doi/10.1002/etc.2980/full     

Transmembrane transport of polycyclic aromatic hydrocarbons by bacteria and functional regulation of membrane proteins

• Explaintheadsorption, uptake and transmembrane transport of PAHs by bacteria. • Analyze functional regulation of membrane proteins inthe transmembrane transport. • Proteomics technology such as iTRAQ labeling was used to access expressed proteins. • Single cell analysis technology wereused to study the morphological structure. In recent years, increasing research has been conducted on transmembrane transport processes and the mechanisms behind the microbial breakdown of polycyclic aromatic hydrocarbons (PAHs), including the role of membrane proteins in transmembrane transport and the mode of transmission. This article explains the adsorption, uptake and transmembrane transport of PAHs by bacteria, the regulation of membrane protein function during the transmembrane transport. There are three different regulation mechanisms for uptake, depending on the state and size of the oil droplets relative to the size of the microbial cells, which are (i) direct adhesion, (ii) emulsification and pseudosolubilization, and (iii) interfacial uptake. Furthermore, two main transmembrane transport modes are introduced, which are (i) active transport and (ii) passive uptake and active efflux mechanism. Meanwhile, introduce the proteomics and single cell analysis technology used to address these areas of research, such as Isobaric tags for relative and absolute quantitation (iTRAQ) technology and Nano Secondary ion mass spectrometry (Nano-SIMS). Additionally, analyze the changes in morphology and structure and the characteristics of microbial cell membranes in the process of transmembrane transport. Finally, recognize the microscopic mechanism of PAHs biodegradation in terms of cell and membrane proteins are of great theoretical and practical significance for understanding the factors that influence the efficient degradation of PAHs contaminants in soil and for remediating the PAHs contamination in this area with biotechnology.     

Alterations to proteome and tissue recovery responses in fish liver caused by a short-term combination treatment with cadmium and benzo[a]pyrene

The livers of soles (Solea senegalensis) injected with subacute doses of cadmium (Cd), benzo[a]pyrene (B[a]P), or their combination, were screened for alterations to cytosolic protein expression patterns, complemented by cytological and histological analyses. Cadmium and B[a]P, but not combined, induced hepatocyte apoptosis and Kupfer cell hyperplasia. Proteomics, however, suggested that apoptosis was triggered through distinct pathways. Cadmium and B[a]P caused upregulation of different anti-oxidative enzymes (peroxiredoxin and glutathione peroxidase, respectively) although co-exposure impaired induction. Similarly, apoptosis was inhibited by co-exposure, to which may have contributed a synergistic upregulation of tissue metalloproteinase inhibitor, β-actin and a lipid transport protein. The regulation factors of nine out of eleven identified proteins of different types revealed antagonistic or synergistic effects between Cd and B[a]P at the prospected doses after 24 h of exposure. The results indicate that co-exposure to Cd and B[a]P may enhance toxicity by impairing specific responses and not through cumulative damage.     

The response of Populus spp. to cadmium stress: Chemical,morphological and proteomics study

Poplar (Populus) species are seen as candidates for removing heavy metal contamination from polluted soil. A bottom-up multidisciplinary approach was utilized to compare the performances of clones 58-861 and Poli (Populus nigra) and A4A, a Populus nigra × Populus deltoides hybrid to Cd toxicity. Qualitative and quantitative differences in their tolerance to Cd exposure and the uptake, accumulation and translocation of Cd were noted following the hydroponic exposure of rooted cuttings to 20 μM CdSO₄ for either 48 h or 14 d. Cadmium was less toxic for the hybrid clone A4A as compared to Poli and 58-861. Cd uptake and root to shoot translocation were determined by AAS, and its compartmentation was analyzed using SEM/EDX. A comparative proteomic approach was utilized to identify changes in proteins expression according to dose and time of exposure. Toxicity to Cd mainly influenced proteins related to general defense, stress response and carbohydrate metabolism.