Biodegradation of polycyclic aromatic hydrocarbons (PAHs) by fungal enzymes: A review

Polycyclic aromatic hydrocarbons (PAHs) are a large group of chemicals. They represent an important concern due to their widespread distribution in the environment, their resistance to biodegradation, their potential to bioaccumulate and their harmful effects. Several pilot treatments have been implemented to prevent economic consequences and deterioration of soil and water quality. As a promising option, fungal enzymes are regarded as a powerful choice for degradation of PAHs. Phanerochaete chrysosporium, Pleurotus ostreatus and Bjerkandera adusta are most commonly used for the degradation of such compounds due to their production of ligninolytic enzymes such as lignin peroxidase, manganese peroxidase and laccase. The rate of biodegradation depends on many culture conditions, such as temperature, oxygen, accessibility of nutrients and agitated or shallow culture. Moreover, the addition of biosurfactants can strongly modify the enzyme activity. The removal of PAHs is dependent on the ionization potential. The study of the kinetics is not completely comprehended, and it becomes morem hallenging when fungi are applied for bioremediation. Degradation studies in soil are much more complicated than liquid cultures because of the heterogeneity of soil, thus, many factors should be considered when studying soil bioremediation, such as desorption and bioavailability of PAHs. Different degradation pathways can be suggested. The peroxidases are heme-containing enzymes having common catalytic cycles. One molecule of hydrogen peroxide oxidizes the resting enzyme withdrawing two electrons. Subsequently, the peroxidase is reduced back in two steps of one electron oxidation. Laccases are copper-containing oxidases. They reduce molecular oxygen to water and oxidize phenolic compounds.     

Metabolites of the phenylurea herbicides chlorotoluron, diuron, isoproturon and linuron produced by the soil fungus Mortierella sp.

Phenylurea herbicides are used worldwide, and often pollute surface- and groundwater in concentrations exceeding the limit value for drinking water (0.1 μg l⁻¹). Bacteria degrade phenylurea herbicides by successive N-dealkylation to substituted aniline products. Little is known about the corresponding fungal pathways, however. We here report degradation of chlorotoluron, diuron, isoproturon and linuron by the soil fungus Mortierella sp. Gr4. Degradation was fastest with linuron and resulted in successively dealkylated metabolites and 3,4-dichloroaniline. A major new metabolite was detected that has not yet been fully identified. Thin layer chromatography and nuclear magnetic resonance spectroscopy indicate that it is a non-aromatic diol. Degradation of isoproturon, chlorotoluron and diuron involved successive N-demethylation and, in the case of isoproturon and chlorotoluron, additional hydroxylation. A new hydroxylated isoproturon metabolite was detected. The study thus shows that the fungal pathways differ from the bacterial pathways and yield new metabolites of possible environmental concern.     

The fungal colonisation of rock-art caves: experimental evidence

The conservation of rock-art paintings in European caves is a matter of increasing interest. This derives from the bacterial colonisation of Altamira Cave, Spain and the recent fungal outbreak of Lascaux Cave, France—both included in the UNESCO World Heritage List. Here, we show direct evidence of a fungal colonisation of rock tablets in a testing system exposed in Altamira Cave. After 2 months, the tablets, previously sterilised, were heavily colonised by fungi and bacteria. Most fungi isolated were labelled as entomopathogens, while the bacteria were those regularly identified in the cave. Rock colonisation was probably promoted by the dissolved organic carbon supplied with the dripping and condensation waters and favoured by the displacement of aerosols towards the interior of the cave, which contributed to the dissemination of microorganisms. The role of arthropods in the dispersal of spores may also help in understanding fungal colonisation. This study evidences the fragility of rock-art caves and demonstrates that microorganisms can easily colonise bare rocks and materials introduced into the cavity.     

Bacteria on housefly eggs, Musca domestica, suppress fungal growth in chicken manure through nutrient depletion or antifungal metabolites

Female houseflies, Musca domestica (Diptera: Muscidae), lay their eggs in ephemeral resources such as animal manure. Hatching larvae compete for essential nutrients with fungi that also colonize such resources. Both the well-known antagonistic relationship between bacteria and fungi and the consistent presence of the bacterium Klebsiella oxytoca on housefly eggs led us to hypothesize (1) that K. oxytoca, and possibly other bacteria on housefly eggs, help curtail the growth of fungal resource competitors and (2) that such fungi indeed adversely affect the development of housefly larvae. Bacteria washed from housefly eggs significantly reduced the growth of fungi in chicken manure. Nineteen bacterial strains and ten fungal strains were isolated from housefly eggs or chicken manure, respectively. Co-culturing each of all the possible bacterium–fungus pairs revealed that the bacteria as a group, but no single bacterium, significantly suppressed the growth of all fungal strains tested. The bacteria's adverse effect on fungi is due to resource nutrient depletion and/or the release of antifungal chemicals. Well-established fungi in resources significantly reduced the number of larval offspring that completed development to adult flies. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Effects of soiling and cleaning on the reflectance and solar heat gain of a light-colored roofing membrane

A roof with high solar reflectance and high thermal emittance (e.g., a white roof) stays cool in the sun, reducing cooling power demand in a conditioned building and increasing summertime comfort in an unconditioned building. The high initial solar reflectance of a white membrane roof (circa 0.8) can be lowered by deposition of soot, dust, and/or biomass (e.g., fungi or algae) to about 0.6; degraded solar reflectances range from 0.3 to 0.8, depending on exposure. We investigate the effects of soiling and cleaning on the solar spectral reflectances and solar absorptances of 15 initially white or light-gray polyvinyl chloride membrane samples taken from roofs across the United States. Black carbon and organic carbon were the two identifiable strongly absorbing contaminants on the membranes. Wiping was effective at removing black carbon, and less so at removing organic carbon. Rinsing and/or washing removed nearly all of the remaining soil layer, with the exception of (a) thin layers of organic carbon and (b) isolated dark spots of biomass. Bleach was required to clear these last two features. At the most soiled location on each membrane, the ratio of solar reflectance to unsoiled solar reflectance (a measure of cleanliness) ranged from 0.41 to 0.89 for the soiled samples; 0.53 to 0.95 for the wiped samples; 0.74 to 0.98 for the rinsed samples; 0.79 to 1.00 for the washed samples; and 0.94 to 1.02 for the bleached samples. However, the influences of membrane soiling and cleaning on roof heat gain are better gauged by fractional variations in solar absorptance. Solar absorptance ratios (indicating solar heat gain relative to that of an unsoiled membrane) ranged from 1.4 to 3.5 for the soiled samples; 1.1 to 3.1 for the wiped samples; 1.0 to 2.0 for the rinsed samples; 1.0 to 1.9 for the washed samples; and 0.9 to 1.3 for the bleached samples.     

Oxidation of polycyclic aromatic hydrocarbons by fungal isolates from an oil contaminated refinery soil

BACKGROUND AND OBJECTIVE: Indigenous soil microorganisms are used for the biodegradation of petroleum hydrocarbons in oily waste residues from the petroleum refining industry. The objective of this investigation was to determine the potential of indigenous strains of fungi in soil contaminated with petroleum hydrocarbons to biodegrade polycyclic aromatic hydrocarbons (PAH). MATERIALS AND METHODS: Twenty one fungal strains were isolated from a soil used for land-farming of oily waste residues from the petrochemical refining industry in Singapore and identified to genus level using laboratory culture and morphological techniques. Isolates were incubated in the presence of 30 mg/L of phenanthrene over a period of 28 days at 30 degrees C. The most effective strain was further evaluated to determine its ability to oxidise a wider range of PAH compounds of various molecular weight i.e acenaphthene, fluorene, fluoranthene, chrysene, benzo(a)pyrene and dibenz(ah)anthracene RESULTS AND DISCUSSION: After 28 days of incubation, 18 of the 21 fungal cultures were capable of oxidising over 50% of the phenanthrene present in culture medium, relative to abiotic controls. Fungal isolate, Penicillium sp. 06, was able to oxidise 89% of the phenanthrene present. This isolate could also oxidise more than 75% of the acenaphthene, fluorene and fluoranthene after 30 days of incubation. However, the oxidation of high molecular weight PAH i.e. chrysene, benzo(a)pyrene and dibenz(ah)anthracene by the Penicillium sp. 06 isolate was limited, where the extent of oxidation was inversely proportional to PAH molecular weight. CONCLUSIONS: Fungal isolate, Penicillium sp. 06, was effective at oxidising a range of PAH in petroleum contaminated soils, but higher molecular weight PAH were more recalcitrant. RECOMMENDATIONS AND OUTLOOK: There is potential for the re-application of this fungal strain to soil for bioremediation purposes.     

Antimony content of macrofungi from clean and polluted areas

Species of macrofungi (mushrooms) were collected from clean areas and analyzed for their antimony content. These were compared to species collected from extremely polluted areas in the vicinity of a lead smelter and on mine and slag dumps. Antimony content was determined using long-term instrumental neutron activation analysis (INAA). Ectomycorrhizal and terrestrial saprobic macrofungi were examined. Antimony content of macrofungi from the clean areas was mostly less than 100 μg kg⁻¹ (dry mass). The highest concentrations (units of mg kg⁻¹) were found in various species of the ectomycorrhizal genera Chalciporus and Suillus. Antimony contents of macrofungi growing in the polluted areas were considerably higher. The highest content was found in a single collection of Chalciporus piperatus (1423 mg kg⁻¹).     

Microbial Inoculants on Woody Legumes to Recover a Municipal Landfill Site

Tree and shrubby legumes have great potential in degraded land rehabilitation because of their ability to form symbiotic associations with nitrogen fixing rhizobia and mycorrhizal fungi. Extensive soil disturbance reduces natural microbial propagules thus preventing the formation of beneficial plant-microbes symbiosis. Reintroduction of selected microbial symbionts may improve the recovery rate of disturbed ecosystems. We inoculated selected rhizobia and arbuscular mycorrhizal fungi on two woody legume species, the mediterranean shrub Spartium junceumL. and the exotic tree Acacia cyanophylla Lindl. in order to recover a sealed municipal landfill (Palermo, Sicily, Italy). Inoculated plants showed shoot growth parameters 2 to 12-fold higher than uninoculated plants. After transplanting on the municipal landfill site, inoculated plants showed no transplant shock and low mortality (6–15%). The chemical analysis of P and N plant content showed no differences between inoculated and uninoculated plants suggesting that a dilution effect occurred due to higher biomass production of the inoculated plants. The beneficial effects of mycorrhization and rhizobium inoculum on growth parameters were still detectable one year after transplanting in S. junceum.     

Treatment of dynamic mixture of hexane and benzene vapors in a Trickle Bed Air Biofilter integrated with cyclic adsorption/desorption beds

One of the main challenges that face successful biofiltration is the erratic loading pattern and long starvation periods. However, such patterns are common in practical applications. In order to provide long-term stable operation of a biofilter under these conditions, a cyclic adsorption/desorption beds system with flow switching was installed prior to a biofilter. Different square waves of a mixture containing n-hexane and benzene at a 2:1 ratio were applied to the cyclic adsorption/desorption beds and then fed to a biofilter. The performance of this integrated system was compared to a biofilter unit receiving the same feed of both VOCs. The cyclic adsorption/desorption beds unit successfully achieved its goal of stabilizing erratic loading even with very sharp peaks at the influent concentration equalizing influent concentrations ranging from 10-470 ppmv for n-hexane to 30-1410 ppmv for benzene. The study included different peak concentrations with durations ranging from 6 to 20 min. The cyclic beds buffered the fluctuating influent load and the followed biofilter had all the time a continuous stable flow. Another advantage achieved by the cyclic adsorption/desorption beds was the uninterrupted feed to the biofilter even during the starvation where there was no influent in the feed. The results of the integrated system with regard to removal efficiency and kinetics are comparable to published results with continuous feed studies at the same loading rates. The removal efficiency for benzene had a minimum of 85% while for n-hexane ranged from 50% to 77% according to the loading rate. The control unit showed very erratic performance highlighting the benefit of the utilization of the cyclic adsorption/desorption beds. The biofilter was more adaptable to concentration changes in benzene than n-hexane.     

染料脱色菌的筛选及对活性艳红X-3B的脱色研究

从广州某印染厂生化处理池的活性污泥中筛选到三株对活性艳红X-3B具有高效脱色作用的真菌,其中菌株HMX-3的脱色能力最强。考察了培养时间、温度、培养方式、pH值以及染料浓度对HMX-3脱色能力的影响。结果表明,菌株HMX-3对150mg/L X-3B的24h脱色率达65.8%,经60h可使其完全脱色;HMX-3对活性艳红X-3B脱色的最适温度为25℃~35℃,最佳pH值为6~8,且振荡培养较静置培养条件下的脱色率高;随染料浓度的增加,脱色率降低,但对于400mg/L的X-3B在72h时的脱色率可达86.7%。