Improvement of aquaculture water quality by mixed Bacillus and its effects on microbial community structure

Microbial remediation, especially the application of probiotics, has recently gained popularity in improving water quality and maintaining aquatic animal health. The efficacy and mechanism of mixed Bacillus for improvement of water quality and its effects on aquatic microbial community structure remain unknown. To elucidate these issues, we applied two groups of mixed Bacillus (Bacillus megaterium and Bacillus subtilis (A0?+?BS) and Bacillus megaterium and Bacillus coagulans (A0?+?BC)) to the aquaculture system of Crucian carp. Our results showed that the improvement effect of mixed Bacillus A0?+?BS on water quality was better than that of A0?+?BC, and the NH₄⁺-N, NO₂^?-N, NO₃^?-N, and total phosphorus (TP) concentrations were reduced by 46.3%, 76.3%, 35.6%, and 80.3%, respectively. In addition, both groups of mixed Bacillus increased the diversity of the bacterial community and decreased the diversity of the fungal community. Microbial community analysis showed that mixed Bacillus A0?+?BS increased the relative abundance of bacteria related with nitrogen and phosphorus removal, such as Proteobacteria, Actinobacteria, Comamonas, and Stenotrophomonas, but decreased the relative abundance of pathogenic bacteria (Acinetobacter and Pseudomonas) and fungi (Epicoccum and Fusarium). Redundancy analysis showed that NH₄⁺-N, NO₂^?-N, and TP were the primary environmental factors affecting the microbial community in aquaculture water. PICRUST analysis indicated that all functional pathways in the A0?+?BS group were richer than those in other groups. These results indicated that mixed Bacillus A0?+?BS addition produced good results in reducing nitrogenous and phosphorus compounds and shaped a favorable microbial community structure to further improve water quality.

Graphical abstract