Montane meadows in the Sierra Nevada: comparing terrestrial and aquatic assessment methods

We surveyed montane meadows in the northern Sierra Nevada and southern Cascades for two field seasons to compare commonly used aquatic and terrestrial-based assessments of meadow condition. We surveyed (1) fish, (2) reptiles, (3) amphibians, (4) aquatic macroinvertebrates, (5) stream geomorphology, (6) physical habitat, and (7) terrestrial vegetation in 79 meadows between the elevations of 1,000 and 3,000?m. From the results of those surveys, we calculated five multi-metric indices based on methods commonly used by researchers and land management agencies. The five indices consisted of (1) fish only, (2) native fish and amphibians, (3) macroinvertebrates, (4) physical habitat, and (5) vegetation. We compared the results of the five indices and found that there were significant differences in the outcomes of the five indices. We found positive correlations between the vegetation index and the physical habitat index, the invertebrate index and the physical habitat index, and the two fish-based indices, but there were significant differences between indices in both range and means. We concluded that the five indices provided very different interpretations of the condition in a given meadow. While our assessment of meadow condition changed based on which index was used, each provided an assessment of different components important to the overall condition of a meadow system. Utilizing a multimetric approach that accounts for both terrestrial and aquatic habitats provides the best means to accurately assess meadow condition, particularly given the disproportionate importance of these systems in the Sierra Nevada landscape.     

Combined use of rapid bioassessment protocols and sediment quality triad to assess stream quality

Physical, chemical and biological conditions at five stations on a small southeastern stream were evaluated using the Rapid Bioassessment Protocols (RBP) and the Sediment Quality Triad (SQT) to assess potential biological impacts of a municipal wastewater treatment facility (WWTF) on downstream resources. Physical habitat, benthic macroinvertebrates and fish assemblages were impaired at Stations 1 and 2 (upstream of the WWTF), suggesting that the degraded physical habitat was adversely impacting the fish and benthic populations. The SQT also demonstrated that Stations 1 and 2 were degraded, but the factors responsible for the impaired conditions were attributed to the elevated concentrations of polycylclic aromatic hydrocarbons (PAHs) and metals (Mn, Pb) in the sediments. The source of contaminants to the upper reaches of the stream appears to be storm-water runoff from the city center. Increased discharge and stabilized base flow contributed by the WWTF appeared to benefit the physically-altered stream system. Although the two assessment procedures demonstrated biological impairment at the upstream stations, the environmental factors identified as being responsible for the impairment were different: the RBP provided insight into contributions associated with the physical habitat and the SQT contributed information on contaminants and sediment quality. Both procedures are important in the identification of physical and chemical factors responsible for environmental impairment and together they provide information critical to the development of appropriate management options for mitigation.     

Derivation of no-effect and reference-level sediment quality values for application at Saskatchewan uranium operations

To date, the majority of empirical approaches used to derive sediment quality values (SQVs) have focused on metal concentrations in sediment associated with adverse effects on benthic invertebrate communities. Here, we propose the no-effect (NE) approach. This SQV derivation methodology uses metal concentrations in sediment associated with unaffected benthic communities (i.e., from reference sites and lightly contaminated no-effect sites) and accounts for local benthic invertebrate tolerance and potential chemical interactions at no-effect exposure sites. This NE approach was used to propose alternative regional SQVs for uranium operations in northern Saskatchewan. Three different sets of NE values were derived using different combinations of benthic invertebrate community effects criteria (abundance, richness, evenness, Bray–Curtis index). Additionally, reference values were derived based solely on sediment metal concentrations from reference sites. In general, NE values derived using abundance, richness, and evenness (NE1 and NE2 values) were found to be higher than the NE values derived using all four metrics (NE3 values). Derived NE values for Cr, Cu, Pb, and V did not change with the incorporation of additional effects criteria due to a lack of influence from the uranium operations on the concentrations of these metals in sediment. However, a gradient of exposure concentrations was apparent for As, Mo, Ni, Se, and U in sediment which allowed for tolerable exposure levels of these metals in sediment to be defined. The findings from this assessment have suggested a range of new, alternate metal SQVs for use at uranium operations in northern Saskatchewan.     

Biological community structure on patch reefs in Biscayne National Park, FL, USA

Coral reef ecosystem management benefits from continual quantitative assessment of the resources being managed, plus assessment of factors that affect distribution patterns of organisms in the ecosystem. In this study, we investigate the relationships among physical, benthic, and fish variables in an effort to help explain the distribution patterns of organisms on patch reefs within Biscayne National Park, FL, USA. We visited a total of 196 randomly selected sampling stations on 12 shallow (<10 m) patch reefs and measured physical variables (e.g., substratum rugosity, substratum type) and benthic and fish community variables. We also incorporated data on substratum rugosity collected remotely via airborne laser surveying (Experimental Advanced Airborne Research Lidar—EAARL). Across all stations, only weak relationships were found between physical, benthic cover, and fish assemblage variables. Much of the variance was attributable to a “reef effect,” meaning that community structure and organism abundances were more variable at stations among reefs than within reefs. However, when the reef effect was accounted for and removed statistically, patterns were detected. Within reefs, juvenile scarids were most abundant at stations with high coverage of the fleshy macroalgae Dictyota spp., and the calcified alga Halimeda tuna was most abundant at stations with low EAARL rugosity. Explanations for the overwhelming importance of “reef” in explaining variance in our dataset could include the stochastic arrangement of organisms on patch reefs related to variable larval recruitment in space and time and/or strong historical effects due to patchy disturbances (e.g., hurricanes, fishing), as well as legacy effects of prior residents (“priority” effects).     

Relationships between aquatic invertebrate communities,water-level fluctuations and different habitats in a subtropical lake

In lakes, the littoral habitat and its invertebrate communities are often exposed to water-level fluctuations. We examined the effects of seasonal changes on water level, substrata availability and benthic fauna in the littoral zone of Peri Lake, a shallow lake that has experienced a strong reduction in water level due to changes in rainfall. In this study, we also examined whether the abundance and composition of aquatic invertebrates differed among the four substrata. Our main objective was to assess the effect of seasonal changes on water level and benthic invertebrates inhabiting the different types of substrata. Benthic invertebrates were sampled four different substrata (Schoenoplectus californicus, sand and stones, allochthonous leaf litter, and macrophyte stands), and we also measured meteorological, physical and chemical variables. We found that complex habitats, such as allochthonous leaf litter and aquatic macrophyte, stand to be colonised by a larger number of macroinvertebrates because they provide more habitats or potential niches for colonisation by different species. In addition, we observed that during periods of low water level, the presence of substrata in the littoral zone decreased, as did the associated biota. Therefore, our results suggest that water level changes have a major functional impact on the littoral zone of the lake, and can affect substratum availability, which also impacts invertebrate communities.     

Characterization of Benthic Communities and Physical Habitat in the Stanislaus, Tuolumne, and Merced Rivers, California

The primary goal of this study was to characterize physical habitat and benthic communities (macroinvertebrates) in the Stanislaus, Tuolumne and Merced Rivers in California’s San Joaquin Valley in 2003. These rivers have been listed as impaired water bodies (303 (d) list) by the State of California due to the presence of organophosphate (OP) insecticides chlorpyrifos and diazinon, Group A pesticides (i.e., organochlorine pesticides), mercury, or unknown toxicity. Based on 10 instream and riparian physical habitat metrics, total physical habitat scores in the Stanislaus River ranged from 124 to 188 (maximum possible total score is 200). The highest total habitat score was reported at the upstream site. Tuolumne River physical habitat scores ranged from 86 to 167. Various Tuolumne River physical habitat metrics, including total habitat score, increased from downstream to upstream in this river. Merced River physical habitat scores ranged from 121 to 170 with a significant increase in various physical habitat metrics, including total habitat score, reported from downstream to upstream. Channel flow (an instream metric) and bank stability (a riparian metric) were the most important physical habitat metrics influencing the various benthic metrics for all three rivers. Abundance measures of benthic macroinvertebrates (5,100 to 5,400 individuals) were similar among the three rivers in the San Joaquin watershed. Benthic communities in all three rivers were generally dominated by: (1) Baetidae species (mayflies) which are a component of EPT taxa generally considered sensitive to environmental degradation; (2) Chironomidae (midges) which can be either tolerant or sensitive to environmental stressors depending on the species; (3) Ephemerellidae (mayflies) which are considered sensitive to pollution stress; and (4) Naididae (aquatic worms) which are generally considered tolerant to environmental stressors. The presence of 117 taxa in the Stanislaus River, 114 taxa in the Tuolumne River and 96 taxa in the Merced River implies that the benthic communities in these streams are fairly diverse but without a clear definition of benthic community expectations it is unknown if these water bodies are actually impaired.     

Advantages of Geographically Weighted Regression for Modeling Benthic Substrate in Two Greater Yellowstone Ecosystem Streams

Stream habitat assessments are commonplace in fish management, and often involve nonspatial analysis methods for quantifying or predicting habitat, such as ordinary least squares regression (OLS). Spatial relationships, however, often exist among stream habitat variables. For example, water depth, water velocity, and benthic substrate sizes within streams are often spatially correlated and may exhibit spatial nonstationarity or inconsistency in geographic space. Thus, analysis methods should address spatial relationships within habitat datasets. In this study, OLS and a recently developed method, geographically weighted regression (GWR), were used to model benthic substrate from water depth and water velocity data at two stream sites within the Greater Yellowstone Ecosystem. For data collection, each site was represented by a grid of 0.1 m² cells, where actual values of water depth, water velocity, and benthic substrate class were measured for each cell. Accuracies of regressed substrate class data by OLS and GWR methods were calculated by comparing maps, parameter estimates, and determination coefficient r ². For analysis of data from both sites, Akaike’s Information Criterion corrected for sample size indicated the best approximating model for the data resulted from GWR and not from OLS. Adjusted r ² values also supported GWR as a better approach than OLS for prediction of substrate. This study supports GWR (a spatial analysis approach) over nonspatial OLS methods for prediction of habitat for stream habitat assessments.     

Assessment of wadeable stream resources in the driftless area ecoregion in Western Wisconsin using a probabilistic sampling design

The Wisconsin Department of Natural Resources (WDNR), with support from the U.S. EPA, conducted an assessment of wadeable streams in the Driftless Area ecoregion in western Wisconsin using a probabilistic sampling design. This ecoregion encompasses 20% of Wisconsin’s land area and contains 8,800 miles of perennial streams. Randomly-selected stream sites (n = 60) equally distributed among stream orders 1–4 were sampled. Watershed land use, riparian and in-stream habitat, water chemistry, macroinvertebrate, and fish assemblage data were collected at each true random site and an associated “modified-random” site on each stream that was accessed via a road crossing nearest to the true random site. Targeted least-disturbed reference sites (n = 22) were also sampled to develop reference conditions for various physical, chemical, and biological measures. Cumulative distribution function plots of various measures collected at the true random sites evaluated with reference condition thresholds, indicate that high proportions of the random sites (and by inference the entire Driftless Area wadeable stream population) show some level of degradation. Study results show no statistically significant differences between the true random and modified-random sample sites for any of the nine physical habitat, 11 water chemistry, seven macroinvertebrate, or eight fish metrics analyzed. In Wisconsin’s Driftless Area, 79% of wadeable stream lengths were accessible via road crossings. While further evaluation of the statistical rigor of using a modified-random sampling design is warranted, sampling randomly-selected stream sites accessed via the nearest road crossing may provide a more economical way to apply probabilistic sampling in stream monitoring programs.     

Relationships of sedimentation and benthic macroinvertebrate assemblages in headwater streams using systematic longitudinal sampling at the reach scale

Investigating relationships of benthic invertebrates and sedimentation is challenging because fine sediments act as both natural habitat and potential pollutant at excessive levels. Determining benthic invertebrate sensitivity to sedimentation in forested headwater streams comprised of extreme spatial heterogeneity is even more challenging, especially when associated with a background of historical and intense watershed disturbances that contributed unknown amounts of fine sediments to stream channels. This scenario exists in the Chattahoochee National Forest where such historical timber harvests and contemporary land-uses associated with recreation have potentially affected the biological integrity of headwater streams. In this study, we investigated relationships of sedimentation and the macroinvertebrate assemblages among 14 headwater streams in the forest by assigning 30, 100-m reaches to low, medium, or high sedimentation categories. Only one of 17 assemblage metrics (percent clingers) varied significantly across these categories. This finding has important implications for biological assessments by showing streams impaired physically by sedimentation may not be impaired biologically, at least using traditional approaches. A subsequent multivariate cluster analysis and indicator species analysis were used to further investigate biological patterns independent of sedimentation categories. Evaluating the distribution of sedimentation categories among biological reach clusters showed both within-stream variability in reach-scale sedimentation and sedimentation categories generally variable within clusters, reflecting the overall physical heterogeneity of these headwater environments. Furthermore, relationships of individual sedimentation variables and metrics across the biological cluster groups were weak, suggesting these measures of sedimentation are poor predictors of macroinvertebrate assemblage structure when using a systematic longitudinal sampling design. Further investigations of invertebrate sensitivity to sedimentation may benefit from assessments of sedimentation impacts at different spatial scales, determining compromised physical habitat integrity of specific taxa and developing alternative streambed measures for quantifying sedimentation.     

Maryland Biological Stream Survey: A State Agency Program to Assess the Impact of Anthropogenic Stresses on Stream Habitat Quality and Biota

The Maryland Department of Natural Resources is conducting the Maryland Biological Stream Survey, a probability-based sampling program, stratified by river basin and stream order, to assess water quality, physical habitat, and biological conditions in first through third order, non-tidal streams. These streams comprise about 90% of all lotic water miles in the state. About 300 sites (75 m segments) are being sampled during spring and summer each year. All basins in the state will be sampled over a three-year period, 1995-97. MBSS developments in 1995-96 included (1) an electrofishing capture efficiency correction method to improve the accuracy of fish population estimates, (2) two indices of biotic integrity (IBI) for fish assemblages to identify degraded streams, and (3) land use information for catchments upstream of sampled sites to investigate associations between stream condition and anthropogenic stresses. Based on fish IBI scores at 270 stream sites in six basins sampled in 1995, 11% of non-tidal stream miles in Maryland were classified as very poor, 15% as poor, 24% as fair, and 27% as good. IBIs have not yet been developed for stream sites with catchment areas less than 120 hectares (23% of non-tidal stream miles). IBI scores declined with stream acid neutralizing capacity (ANC) and pH, an association that was also evident for fish species richness, biomass, and density. Low IBI scores were associated with several measures of degraded stream habitat, but not with local riparian buffer width. There was a significant negative association between IBI scores and urban land use upstream of sampled sites in the only extensively urbanized basin assessed in 1995. Future plans for the MBSS include (1) identifying all benthic macroinvertebrate samples to genus, (2) developing benthic macroinvertebrate, herpetofaunal, and physical habitat indicators, and (3) enhancing the analysis of stream condition-stressor associations by refining landscape metrics and using multi-variate techniques.     

Evaluation of sediment quality guidelines derived using the screening-level concentration approach for application at uranium operations in Saskatchewan,Canada

Sediment quality guidelines (SQGs) can be derived using different approaches and are commonly used in environmental management, reclamation, and risk assessment. The screening-level concentration (SLC) approach has been used in Ontario, Canada, to derive lowest effect levels (LELs) and severe effect levels for use as SQGs. This approach was adopted by the Canadian Nuclear Safety Commission (CNSC) to set guidelines for metals (As, Cr, Cu, Pb, Mo, Ni, Se, U, and V) and radionuclides (Ra-226, Pb-210, and Po-210) in sediment at northern Saskatchewan uranium mining and milling operations. The SLC approach is based on total metal and radionuclide concentrations in sediment, and corresponding benthic community composition data for a specific sampling site. In this study, sediment chemistry (total metals and radionuclides) and benthic community data from northern Saskatchewan uranium operations were compiled and examined. Results indicate that the CNSC-derived SQGs had limited relationships to observed effects, or lack thereof, on benthic invertebrate communities near uranium operations in Saskatchewan. The LELs were found to correctly align with effects at 95% of the sites that had effects, on a general basis, but on an element-specific basis many of the elements had concentrations at effect sites below their LELs. Furthermore, concentrations of the evaluated elements exceeded at least one LEL at 60% of the no-effect sites. The high number of exceedences of LELs at reference and no-effect sites (false-positives) calls to question the appropriateness of the CNSC-derived SQGs. It is suggested that alternatives to the SLC approach be explored.     

A Framework for a Delaware Inland Bays Environmental Classification

Since Delaware's coastal bays have been highly eutrophied for at least twenty years and Maryland's coastal bays are not nutrient stressed, dominance of the fish community in Delaware's coastal bays by Fundulus sp. may be an indicator of nutrient stress. Maryland's coastal bays are menhaden, spot, and anchovy dominated. The dominance of Fundulus sp. in a nutrient-stressed system relates to the hardy nature of these fishes, especially in low-oxygen conditions. Submerged aquatic vegetation as seagrasses (SAV) has been absent from the highly nutrient-stressed Delaware coastal bays for about twenty-five years. In contrast, SAV is still found in Maryland's coastal bays. The loss of SAV as a habitat for young fish may also be contributing to the apparent species shift in Delaware's coastal bays.Indian River Bay is less hospitable to macroalgae (seaweeds) than Rehoboth Bay. Dominance of Ulva in Indian River Bay reflects its tolerance to varying salinities, higher nutrient levels, and increased turbidities, and indicates a stressed system. The total volume of macroalgae, especially in Rehoboth Bay, tends to follow the seasonal cycle for phosphorus.Based on an assessment of the ecological condition of the Delaware and Maryland coastal bays conducted by EMAP in 1993 and other related studies, the author offers a conceptual framework for Delaware's inland bays environmental classification, considering the water quality parameters of turbidity, TSS, Chla, DIN, DIP, and O2 as they relate to presence of SAV, seaweed abundance and diversity, benthic invertebrate diversity, and fish sensitivity to low oxygen.     

Development of a Standardised Approach to River Habitat Assessment in Australia

Despite the demonstrated utility of the Australian River Assessment Scheme (AUSRIVAS) to provide national-scale information on the biological condition of rivers, there is no commensurate scheme that can provide standardised information on physical habitat. Existing habitat assessment methods are not suitable for implementation on a national scale, so we present a new habitat assessment protocol that incorporates favorable elements of existing methods. Habitat Predictive Modelling forms the basis for the protocol because it can predict the occurrence of local-scale features from large-scale data, uses the reference condition concept, can be modified to incorporate a range of biologically and geomorphologically relevant variables, and employs a rapid survey approach. However, the protocol has been augmented with geomorphological variables and incorporates principles of hierarchy and geomorphological river zonation. There are four sequential components to the implementation of the protocol: reference site selection, data collection, predictive model construction and assessment of test sites using the predictive models. Once implemented, the habitat assessment protocol will provide a standardised tool for the assessment of river habitat condition at a variety of governance levels.     

A moving target—incorporating knowledge of the spatial ecology of fish into the assessment and management of freshwater fish populations

Freshwater fish move vertically and horizontally through the aquatic landscape for a variety of reasons, such as to find and exploit patchy resources or to locate essential habitats (e.g., for spawning). Inherent challenges exist with the assessment of fish populations because they are moving targets. We submit that quantifying and describing the spatial ecology of fish and their habitat is an important component of freshwater fishery assessment and management. With a growing number of tools available for studying the spatial ecology of fishes (e.g., telemetry, population genetics, hydroacoustics, otolith microchemistry, stable isotope analysis), new knowledge can now be generated and incorporated into biological assessment and fishery management. For example, knowing when, where, and how to deploy assessment gears is essential to inform, refine, or calibrate assessment protocols. Such information is also useful for quantifying or avoiding bycatch of imperiled species. Knowledge of habitat connectivity and usage can identify critically important migration corridors and habitats and can be used to improve our understanding of variables that influence spatial structuring of fish populations. Similarly, demographic processes are partly driven by the behavior of fish and mediated by environmental drivers. Information on these processes is critical to the development and application of realistic population dynamics models. Collectively, biological assessment, when informed by knowledge of spatial ecology, can provide managers with the ability to understand how and when fish and their habitats may be exposed to different threats. Naturally, this knowledge helps to better evaluate or develop strategies to protect the long-term viability of fishery production. Failure to understand the spatial ecology of fishes and to incorporate spatiotemporal data can bias population assessments and forecasts and potentially lead to ineffective or counterproductive management actions.     

Derivation and Use of Sediment Quality Guidelines for Ecological Risk Assessment of Metals and Radionuclides Released to the Environment from Uranium Mining and Milling Activities in Canada

The Screening Level Concentration (SLC) approach was used to derive Lowest Effect Level (LEL) and Severe Effect Level (SEL) concentrations for nine metals (As, Cr, Cu, Pb, Mo, Ni, Se, U and V) and three radionuclides (²²⁶Ra, ²¹⁰Pb, and ²¹⁰Po) released to the aquatic environment during the mining and milling of uranium ore. This method was chosen because it allowed for the best use of the considerable historical and current data collected for diverse purposes in the uranium mining and milling regions of Canada (20,606 data points used in the analysis). Except for Cr, all the LELs derived in this study using the weighted method and published sediment quality guidelines (SQGs) were highly reliable (> 85%) in predicting sites unimpacted by uranium mining/milling defined as sites where reductions in the abundance and species richness of benthic invertebrate communities were < 20%. The derived SEL values and corresponding published SQGs (with the exception of Ni) were not reliable predictors (≤60%) of severe impacts on benthic invertebrate communities when severe impacts are defined as a reduction in abundance and species richness ≥40%. Most of the severely impacted sites had sediment contaminant concentrations well below the SEL values. It is concluded that LELs derived using the weighted method can reliably be used in ecological risk assessments as concentrations below which adverse effects on benthic invertebrate communities are not expected. In contrast, it is recommended that SELs not be used in assessments of uranium mining/milling activities as concentrations above which adverse effects are anticipated.     

长江流域水生态评价指标初步研究

通过调研20世纪90年代以来国外主流水生态评价项目中采用的生境指标,统计了14个类型生境指标的使用频率,并针对不同的河流类型,筛选出物理形态特征、河岸带状况、生境组成、生境复杂性、人类干扰和水质状况等6个类型的11项评价指标,推荐作为长江流域河流生境评价指标.随后,利用层次分析法对国外水生生物评价指标进行了统计分析,并...     

Effects of Roadway Crossings on Leaf Litter Processing and Invertebrate Assemblages in Small Streams

The effects of the Maine Turnpike (Interstate 95) on leaf litter processing were examined in five first- and second-order coastal plain streams in southern Maine, U.S.A. Invertebrate assemblages and red maple leaf softening and loss rates were compared at 53 stations arrayed upstream and downstream of the turnpike. Litter softening rate was not affected by the roadway. Litter loss rate was significantly faster at downstream stations (-0.0024 degree-day(-1)) than at upstream stations or at stations nearest the roadway, which were not different from each other (-0.0022 degree-day(-1)). Litter softening and loss rates were more strongly related to physical and chemical habitat variables than to shredder assemblage characteristics. Significant among-stream differences were observed in most community structural metrics and in biomass of important shredder taxa, but effects of the roadway were rarely consistent among streams. This is attributed in part to habitat variation, which was greater among streams than within streams. This study suggests that while the presence of the Maine Turnpike may influence stream water quality and habitat structure, the relatively subtle effects of roadway runoff and associated habitat modifications on stream ecosystem processes are masked by within- and among-stream variability in litter processing and leaf pack invertebrate assemblage structure.     

Use of fish functional traits to associate in-stream suspended sediment transport metrics with biological impairment

Loss of ecological integrity due to excessive suspended sediment in rivers and streams is a major cause of water quality impairment in the USA. Current assessment protocols for development of sediment total maximum daily loads (TMDLs) lack a means to link temporally variable sediment transport rates with specific losses of ecological functions as loads increase. In order to accomplish this linkage assessment, a functional traits-based approach was used to correlate site occurrences of 17 fish species traits in three main groups (preferred rearing habitat, trophic feeding guild, and spawning behavior) with suspended sediment transport metrics. The sediment transport metrics included concentrations, durations, and dosages for a range of exceedance frequencies; and mean annual suspended sediment yields (SSY). In addition, this study in the Northwestern Great Plains Ecoregion examined trait relationships with three environmental gradients: channel stability, drainage area, and elevation. Potential stressor responses due to elevated suspended sediment concentration (SSC) levels were correlated with occurrences of five traits: preferred pool habitat; feeding generalists, omnivores, piscivores, and nest-building spawners; and development of ecologically based TMDL targets were demonstrated for specific SSC exceedance frequencies. In addition, reduced site occurrences for preferred pool habitat and nest-building spawners traits were associated with unstable channels and higher SSY. At an ecoregion scale, a functional traits assessment approach provided a means to quantify relations between biological impairment and episodically elevated levels of suspended sediment, supporting efforts to develop ecologically based sediment TMDLs.