Plant genes link forests and streams

Although it is understood that the composition of riparian trees can affect stream function through leaf litter fall, the potential effects of genetic variation within species are less understood. Using a naturally hybridizing cottonwood system, we examined the hypothesis that genetic differences among two parental species (Populus fremontii and P. angustifolia) and two groups of their hybrids (F1 and backcrosses to P. angustifolia) would affect litter decomposition rates and the composition of the aquatic invertebrate community that colonizes leaves. Three major findings emerged: (1) parental and hybrid types differ in litter quality, (2) decomposition differs between two groups, a fast group (P. fremontii and F1 hybrid), and a slow group (P. angustifolia and backcross hybrids), and (3) aquatic invertebrate communities colonizing P. fremontii litter differed significantly in composition from all other cross types, even though P. fremontii and the F1 hybrid decomposed at similar rates. These findings are in agreement with terrestrial arthropod studies in the same cottonwood system. However, the effects are less pronounced aquatically than those observed in the adjacent terrestrial community, which supports a genetic diffusion hypothesis. Importantly, these findings argue that genetic interactions link terrestrial and aquatic communities and may have significant evolutionary and conservation implications.     

A genetic basis to community repeatability and stability

Recent studies have shown that genetically based traits of plants can structure associated arthropod and microbial communities, but whether the effects are consistent and repeatable across years is unknown. If communities are both heritable (i.e., related individuals tend to support similar communities) and repeatable (i.e., the same patterns observed over multiple years), then plant genetics may also affect community properties previously thought to be emergent, such as "stability." Using replicated clones of narrowleaf cottonwood (Populus angustifolia) and examining an arthropod community of 103 species, we found that (1) individual tree genotypes supported significantly different arthropod communities, which exhibited broad-sense heritability; (2) these findings were highly repeatable over three consecutive years (repeatability = 0.91) indicating that community responses to individual tree genotypes are consistent from year to year; (3) differences among tree genotypes in community stability (i.e., changes in community composition over multiple years) exhibited broad-sense heritability (H(C)2 = 0.32). In combination, these findings suggest that an emergent property such as stability can be genetically based and thus subject to natural selection.     

Bottom-up effects of plant genotype on aphids, ants, and predators

Theory predicts that bottom-up ecological forces can affect community dynamics, but whether this extends to the effects of heritable plant variation on tritrophic communities is poorly understood. In a field experiment, I contrasted the effects of plant genotype (28 genotypes; 1064 plants), aphid density, and the presence/absence of mutualistic ants in affecting the per capita population growth of a specialist aphid herbivore, as well as the effects of plant genotype on the third trophic level. Plant genotype strongly affected aphid population growth rate, explaining 29% of the total variation in growth rate, whereas aphid density and ant-aphid interactions explained substantially less variation (< 2%) in aphid population growth rate. Plant genotype also had direct and indirect effects on the third trophic level, affecting the abundance of aphid-tending ants and the richness of predators. Multiple regression identified several heritable plant traits that explained 49% of the variation in aphid growth rate and 30% of the variation in ant abundance among plant genotypes. These bottom-up effects of plant genotype on tritrophic interactions were independent of the effects of either initial aphid density or the presence/absence of mutualistic ants. This study shows that plant genotype can be one of the most important ecological factors shaping tritrophic communities.     

Seasonal variations in plant species effects on soil N and P dynamics

It is well established that plant species influence ecosystem processes, but we have little ability to predict which vegetation changes will alter ecosystems, or how the effects of a given species might vary seasonally. We established monocultures of eight plant species in a California grassland in order to determine the plant traits that account for species impacts on nitrogen and phosphorus cycling. Plant species differed in their effects on net N mineralization and nitrification rates, and the patterns of species differences varied seasonally. Soil PO4- and microbial P were more strongly affected by slope position than by species. Although most studies focus on litter chemistry as the main determinant of plant species effects on nutrient cycling, this study showed that plant species affected biogeochemical cycling through many traits, including direct traits (litter chemistry and biomass, live-tissue chemistry and biomass) and indirect traits (plant modification of soil bioavailable C and soil microclimate). In fact, species significantly altered N and P cycling even without litter inputs. It became particularly critical to consider the effects of these multiple traits in order to account for seasonal changes in plant species effects on ecosystems. For example, species effects on potential rates of net N mineralization were most strongly influenced by soil bioavailable C in the fall and by litter chemistry in the winter and spring. Under field conditions, species effects on soil microclimate influenced rates of mineralization and nitrification, with species effects on soil temperature being critical in the fall and species effects on soil moisture being important in the dry spring. Overall, this study clearly demonstrated that in order to gain a mechanistic, predictive understanding of plant species effects on ecosystems, it is critical to look beyond plant litter chemistry and to incorporate the effects of multiple plant traits on ecosystems.     

植物多样性对土壤微生物的影响

生物多样性强烈地影响生态系统的过程.生态系统过程的变化可导致生物多样性衰减并因此导致生态系统功能衰退.植物种丰度和植物功能多样性对土壤细菌群落的代谢活性和代谢多样性有成正比的影响.土壤细菌的代谢活性和代谢多样性随植物种数量的对数和植物功能组的数量而直线上升.其原因可能是由植被流入土壤的物质和能量的多样性和数量的增加,也可能是由土壤动物区系起作用的土壤微生境的多样性的增加造成的.由于植物多样性的丧失所引起的植物生物量的减少对分解者群落有强烈的影响微生物生物量将可能减少,因为在大多数陆地生态系统中,有机碳源限制着土壤微生物的活性.     

Benefits of Conservation of Plant Genetic Diversity to Arthropod Diversity

Abstract:  We argue that the genetic diversity of a dominant plant is important to the associated dependent community because dependent species such as herbivores are restricted to a subset of genotypes in the host-plant population. For plants that function as habitat, we predicted that greater genetic diversity in the plant population would be associated with greater diversity in the dependent arthropod community. Using naturally hybridizing cottonwoods (  Populus spp.) in western North America as a model system, we tested the general hypothesis that arthropod alpha (within cross-type richness) and beta (among cross-type composition) diversities are correlated with cottonwood cross types from local to regional scales. In common garden experiments and field surveys, leaf-modifying arthropod richness was significantly greater on either the F₁ (1.54 times) or backcross (1.46 times) hybrid cross types than on the pure broadleaf cross type (  P. deltoides Marshall or P. fremontii Watson). Composition was significantly different among three cross types of cottonwoods at all scales. Within a river system, cottonwood hybrid zones had 1.49 times greater richness than the broadleaf zone, and community composition was significantly different between each parental zone and the hybrid zone, demonstrating a hierarchical concentration of diversity. Overall, the habitats with the highest cottonwood cross-type diversity also had the highest arthropod diversity. These data show that the genetics of habitat is an important conservation concept and should be a component of conservation theory.     

Plant genotype and nitrogen loading influence seagrass productivity, biochemistry, and plant-herbivore interactions

Genetic variation within and among key species can have significant ecological consequences at the population, community, and ecosystem levels. In order to understand ecological properties of systems based on habitat-forming clonal plants, it is crucial to clarify which traits vary among plant genotypes and how they influence ecological processes, and to assess their relative contribution to ecosystem functioning in comparison to other factors. Here we used a mesocosm experiment to examine the relative influence of genotypic identity and extreme levels of nitrogen loading on traits that affect ecological processes (at the population, community, and ecosystem levels) for Zostera marina, a widespread marine angiosperm that forms monospecific meadows throughout coastal areas in the Northern Hemisphere. We found effects of both genotype and nitrogen addition on many plant characteristics (e.g., aboveground and belowground biomass), and these were generally strong and similar in magnitude, whereas interactive effects were rare. Genotypes also strongly differed in susceptibility to herbivorous isopods, with isopod preference among genotypes generally matching their performance in terms of growth and survival. Chemical rather than structural differences among genotypes drove these differences in seagrass palatability. Nitrogen addition uniformly decreased plant palatability but did not greatly alter the relative preferences of herbivores among genotypes, indicating that genotype effects are strong. Our results highlight that differences in key traits among genotypes of habitat-forming species can have important consequences for the communities and ecosystems that depend on them and that such effects are not overwhelmed by known environmental stressors.     

三江源区不同建植年代人工草地群落演替与土壤养分变化

研究了了三源区不同建植期人工修复草地在不同演替阶段毒杂草[主要是甘肃马先蒿(Pedicularis kansuensis)]的入侵规律、数量特征,植物群落物种组成、生物苗和草地质最以及土壤养分、微生物活性的变化规律.结果表明,不同建植期人工修复草地植物群落的种类组成、植物功能群组成和群落数量特征存在显著差异.随着演替时间的推移,人工草地群落盖度、高度、物种数、生物最和多样性指数均表现出"V"字型变化规律,杂类草--甘肃马先蒿的数量特征变化尤为明显,在4 a的人工草地群落中开始局部入侵,在5～6 a的人工草地群落中大面积入侵,其入侵速度、入侵面积达到高峰期.土壤的含水量、容重、土壤中有机质、氮素和磷素在演替过程(7 a、9 a草地)中逐渐降低,到一定时期又逐步增加;随着演替的进行,不同建植期人工草地的土壤微牛物生物量碳和酶活性均呈"V"字型,变化.对于退化生态系统的恢复首先是植被恢复,其次是土壤肥力的恢复.土壤有机质等养分的积累、微生物活性的改善不仅能使土壤-植物复合系统的功能得以恢复,同时也能促进物种多样性的形成,有利于人工草地群落稳定性的提高.在试验区尽管植被恢复演替进行得比较缓慢,但从土壤发展的角度看,仍属进展演替.所以,在退化高寒草甸的恢复过程中,若降低和有效控制外界的干扰(如围栏封育),可为退化草地恢复提供繁殖体与土壤环境,实现人工草地逐步向恢复(正向)演替进行.图3表6参34     

Degradation of benzo[a]pyrene in an experimentally contaminated paddy soil by vetiver grass (Vetiveria zizanioides)

A pot experiment was conducted to study the effect of growing vetiver grass on the biodegradation of benzo[a]pyrene (B[a]P) under glasshouse conditions. Plant biomass, microbial biomass C and degradation of B[a]P were determined. B[a]P disappeared faster in the plant treatments than in unplanted controls. Disappearance of B[a]P was accompanied by an increase in soil microbial biomass C. Vetiver grass may promote the biodegradation of B[a]P under flooded conditions by plant roots by stimulating the microbial biomass. Microbial biomass was the main factor affecting dissipation of B[a]P under flooded conditions.     

Genetics, environment, and their interaction determine efficacy of chemical defense in trembling aspen

Optimal defense theories suggest that a trade-off between defense costs and benefits maintains genetic variation within plant populations. This study assessed the independent and interactive effects of genetic- and environment-based variation in aspen leaf chemistry on insect performance, preference, and defoliation. Gypsy moth larvae were released into screenhouses containing eight aspen genotypes growing with high and low levels of nutrient availability. Plant chemistry, defoliation, and larval growth rates varied in response to genotype, nutrient availability, and their interaction. Total phenolic glycoside concentrations were inversely correlated with patterns of larval preference and were the best predictor of larval performance and defoliation among genotypes. Low-nutrient trees were less heavily defoliated and afforded decreased larval growth rates compared with high-nutrient trees. Nutrient availability mediated the defense benefits of phenolic glycosides, as plant chemistry explained significantly less variation in defoliation in low- compared with high-nutrient trees (7% vs. 44% of variation explained). These results suggest that spatial and temporal variation in resource availability may influence the relative magnitude of defense benefits in plants. Environmental mediation of the defense costs and benefits likely leads to diversifying selection and may maintain genetic polymorphisms in chemical defense traits in plant populations.     

Genotypic richness and phenotypic dissimilarity enhance population performance

Increases in biodiversity can result from an increase in species richness, as well as from a higher genetic diversity within species. Intraspecific genetic diversity, measured as the number of genotypes, can enhance plant primary productivity and have cascading effects at higher trophic levels, such as an increase in herbivore and predator richness. The positive effects of genotypic mixtures are not only determined by additive effects, but also by interactions among genotypes, such as facilitation or inhibition. However, so far there has been no effort to predict the extent of such effects. In this study, we address the question of whether the magnitude of the effect of genotype number on population performance can be explained by the extent of dissimilarity in key traits among genotypes in a mixture. We examine the relative contribution of genotype number and phenotypic dissimilarity among genotypes to population performance of the soil arthropod, Orchesella cincta. Nearly homogeneous genotypes were created from inbred isofemale lines. Phenotypic dissimilarity among genotypes was assessed in terms of three life-history traits that are associated with population growth rate, i.e., egg size, egg development time, and juvenile growth rate. A microcosm experiment with genotype mixtures consisting of one, two, four, and eight genotypes, showed that genotypic richness strongly increased population size and biomass production and was associated with greater net diversity effects. Most importantly, there was a positive log-linear relationship between phenotypic dissimilarity in a mixture and the net diversity effects for juvenile population size and total biomass. In other words, the degree of phenotypic dissimilarity among genotypes determined the magnitude of the genotypic richness effect, although this relationship leveled off at higher values of phenotypic dissimilarity. Although the exact mechanisms responsible for these effects are currently unknown, similar advantages of trait dissimilarity have been found among species. Hence, to better understand population performance, genotype number and phenotypic dissimilarity should be considered collectively.     

The triple helix of Plantago lanceolata: genetics and the environment interact to determine population dynamics

The theory of evolution via natural selection predicts that the genetic composition of wild populations changes over time in response to the environment. Different genotypes should exhibit different demographic patterns, but genetic variation in demography is often impossible to separate from environmental variation. Here, we asked if genetic variation is important in determining demographic patterns. We answer this question using a long-term field experiment combined with general linear modeling of deterministic population growth rates (lambda), deterministic life table response experiment (LTRE) analysis, and stochastic simulation of demography by paternal lineage in a short-lived perennial plant, Plantago lanceolata, in which we replicated genotypes across four cohorts using a standard breeding design. General linear modeling showed that growth rate varied significantly with year, spatial block, and sire. In LTRE analysis of all cohorts, the strongest influences on growth rate were from year x spatial block, and cohort x year x spatial block interactions. In analysis of genetics vs. temporal environmental variation, the strongest impacts on growth rate were from year and year x sire. Finally, stochastic simulation suggested different genetic composition among cohorts after 100 years, and different population growth rates when genetic differences were accounted for than when they were not. We argue that genetic variation, genotype x environment interactions, natural selection, and cohort effects should be better integrated into population ecological studies, as these processes should result in deviations from projected deterministic and stochastic population parameters.     

松嫩草甸不同退化程度生境土壤磷素动态研究

对松嫩草甸不同退化程度生境的几种代表植物群落土壤磷素状况的研究表明,各群落相同土层的全磷含量没有显著的差异,说明土壤磷库具有较强的弹性,土壤退化落后于地上植物群落的退化.各群落土壤全磷的季节变化相似,均经历迅速累积,达到峰值后下降,之后又有一个缓慢积累的过程.羊草、寸草苔和碱茅群落全磷含量随土层的加深而减少,虎尾草群落土壤全磷聚集于10~20cm土层.随退化程度的加重,土壤速效磷含量增加,虎尾草群落土壤速效磷占全磷的比重最高(2.8%),表明退化生境植物群落对速效磷素的利用并不充分.各群落土壤微生物量磷含量均高于速效磷含量,其季节动态均为单峰曲线,峰值出现在8月.虎尾草群落土壤微生物量磷在10~20cm的土层最多,其他群落土壤微生物量磷在0~10cm土层的含量最多.灰色分析的结果表明,土壤速效磷的形成主要受到土壤养分,尤其是碳、氮养分的影响;而土壤温度、水分状况、酸碱状况和盐化程度等因素对土壤微生物量磷的影响较强.图2表3参26     

Effects of two different intercropping systems on arbuscular mycorrhizal fungal colonization and polychlorinated biphenyl (PCB) dissipation北大核心CSCD

Polychlorinated biphenyls (PCBs) are typical organic contaminants in the environment. It is indicated that plants and soil microorganisms have a positive synergistic effect on the remediation of PCB-contaminated soil. To investigate the effect of intercropping on arbuscular mycorrhizal (AM) fungal colonization and PCB remediation, a pot-cultivation experiment with two intercropping treatments, corn (Zea mays L.) / ryegrass (Lolium perenne L.) and corn/alfalfa (Medicago sativa L.), and a corn monoculture was conducted in a greenhouse. All treatments were inoculated with Funneliformis mosseae M47V. Plant biomass, root mycorrhizal colonization rate, concentration of PCBs and their homologs in soil, 16S rDNA gene abundance, and community composition measured by Terminal Restriction Fragment Length Polymorphism (T-RFLP) were determined after harvesting the plants. Intercropping significantly increased the root mycorrhizal colonization rate and plant biomass of corn (P < 0.05), as well as the available N content of the soil. A significant difference of the bacterial community composition was found among different treatments (P < 0.05). Compared with corn monoculture, corn/alfalfa intercropping significantly increased soil bacteria abundance (P < 0.05). The dissipation rates of total PCBs, as well as that of penta-chloro biphenyls were significantly increased in the intercropping treatments, when compared to the corn monoculture treatment. Moreover, corn/ryegrass intercropping has a significantly positive effect on the dissipation of tri-chloro biphenyls. Non-metric multidimensional scaling (NMDS) analysis indicated that the PCBs homologues composition were significantly correlated with the relative abundance of 128 bp and 148 bp T-RFs. Corn intercropping with ryegrass or alfalfa has a positive effect on root mycorrhizal colonization rate and plant biomass of corn. Inoculation of AM fungi in intercropping treatments significantly improved the efficiency of PCB remediation by promoting bacterial abundance and shifting the bacterial community composition. In conclusion, intercropping combined with AM fungi have positive synergistic effects on the remediation of PCB-contaminated soils. © 2018 Science Press. All rights reserved.     

磷、砷双重胁迫对不同耐低磷水稻苗期生长及磷、砷吸收的影响

以1个耐低磷和1个低磷敏感水稻为材料,通过土培试验研究磷、砷双重胁迫对水稻苗期生物学特性及磷、砷吸收的影响,并比较不同品种之间的差异.结果表明,相同磷水平下,外加砷浓度为小于25 mg/kg时,水稻的生物量、叶宽、株高、SPAD值及磷吸收量均随砷浓度的增加而增加,当砷浓度达到50 mg/kg时开始下降,两个品种表现相同趋势.说明少量砷可以刺激水稻生长,促进磷的吸收,砷用量过多则抑制水稻的生长及磷的吸收.相同砷水平下,水稻生物学性状及磷、砷吸收量随磷用量的增加而增加,两个品种亦表现相同趋势.说明适当施磷肥可以缓解砷对水稻生长的抑制作用.上述结果表明,低浓度的磷、砷具有协同效应,高浓度的磷、砷表现拮抗作用.此外,相同磷、砷水平下,供试耐低磷水稻的生物学性状及其相对值较低磷敏感水稻大;但相对磷吸收量(除磷处理为150 mg/kg外)比低磷敏感水稻小,而砷吸收量及其相对值均比低磷敏感水稻多,这可能与二者的磷营养特性及水稻对磷和砷的竞争吸收有关.图7表1参19     

植物根系分泌物与根际营养关系评述

根系分泌物（ｒｏｏｔ ｅｘｕｄａｔｅｓ， ＲＥ）主要有粘胶、外酶、有机酸、糖、酚及各种氨基酸。不同营养基因型的植物， ＲＥ组分明显不同。存在养分和环境胁迫时，植物通过增加粘胶、酶及某些有机酸的分泌量以适应变化的环境。ＲＥ也是植物改善根际营养环境的重要手段。ＲＥ可改善土壤物理结构，促进矿物风化，提高土壤ＣＥＣ，影响土壤ｐＨ、土壤矿物表面吸附性能及土壤生物学性质。ＲＥ还在活化根际土壤养分，促进植物对养分吸收起主要作用。今后ＲＥ的研究应注重ＲＥ研究方法的完善，拓展研究领域，并加强与各学科的联合。     

植物群落对铜尾矿废弃地土壤微生物量和酶活性的影响

以铜尾矿废弃地为对象,研究了铜尾矿废弃地上植物群落发展与表层尾矿微生物量C、N和脱氢酶、过氧化氢碱性磷酸酶和脲酶活性的变化,探讨了植物群落-微生物量C、N_土壤酶活性之间的相互关系.结果表明,随着植物群落的发展,铜尾矿废弃地表层尾矿微生物量和酶活性在不断增加;铜官山老尾矿废弃地白茅群落下表层尾矿(TBM)微生物量和酶活性与杨山冲尾矿废弃地及铜官山新尾矿废弃地表层尾矿微生物量和酶活性存在显著差异性(p<0.05).相关分析表明铜尾矿废弃地表层尾矿微生物量C、N与土壤有机质、总氮之间呈显著正相关(P<0.01);脱氧酶、碱性磷酸酶及脲酶与微生物量C、微生物量N、土壤有机质、总氮之问呈显著正相关(P<0.01),但过氧化氢酶与微生物量C、微生物量N、土壤有机质、总氮之间呈显著负相关(P<0.01).     

Microbial community composition and function across an arctic tundra landscape

Arctic landscapes are characterized by a diversity of ecosystems, which differ in plant species composition, litter biochemistry, and biogeochemical cycling rates. Tundra ecosystems differing in plant composition should contain compositionally and functionally distinct microbial communities that differentially transform dissolved organic matter as it moves downslope from dry, upland to wet, lowland tundra. To test this idea, we studied soil microbial communities in upland tussock, stream-side birch-willow, and lakeside wet sedge tundra in arctic Alaska, USA. These are a series of ecosystems that differ in topographic position, plant composition, and soil drainage. Phospholipid fatty acid (PLFA) analyses, coupled with compound-specific 13C isotope tracing, were used to quantify microbial community composition and function; we also assayed the activity of extracellular enzymes involved in cellulose, chitin, and lignin degradation. Surface soil from each tundra ecosystem was labeled with 13C-cellobiose,13C-N-acetylglucosamine, or 13C-vanillin. After a five-day incubation, we followed the movement of 13C into bacterial and fungal PLFAs, microbial respiration, dissolved organic carbon, and soil organic matter. Microbial community composition and function were distinct among tundra ecosystems, with tussock tundra containing a significantly greater abundance and activity of soil fungi. Although the majority of 13C-labeled substrates rapidly moved into soil organic matter in all tundra soils (i.e., 50-90% of applied 13C), microbial respiration of labeled substrates in wet sedge tundra soil was lower than in tussock and birch-willow tundra; approximately 8% of 13C-cellobiose and approximately 5% of 13C-vanillin was respired in wet sedge soil vs. 26-38% of 13C-cellobiose and 18-21% of 13C-vanillin in the other tundra ecosystems. Despite these differences, wet sedge tundra exhibited the greatest extracellular enzyme activity. Topographic variation in plant litter biochemistry and soil drainage shape the metabolic capability of soil microbial communities, which, in turn, influence the chemical composition of dissolved organic matter across the arctic tundra landscape.     

植被恢复的生态效应研究进展

植被在水土保持、水源涵养及生态系统的固碳过程中起着重要的作用。植被恢复是指运用生态学原理,通过保护现有植被、封山育林或营造人工林、灌、草植被,修复或重建被毁坏或被破坏的森林和其他自然生态系统,恢复其生物多样性及其生态系统功能。目前,植被的自然及人工恢复是改善脆弱生态系统及退化生态系统生态环境现状最有效的措施。植被在恢复过程中对地上植被生态系统,物种多样性的恢复有着重要影响,同时通过凋落物及根系的输入,可以有效改善地下生态系统,增加土壤的养分含量、改善土壤的物理结构、增加土壤生物的生物量及活性。文章以地上及地下生态系统为出发点,综述了植被恢复过程中自然及人工恢复过程中不同的植被类型、不同的恢复时间下植物物种组成和多样性、土壤理化性质及土壤微生物群落的变化。植被的自然及人工恢复在一定程度上均能增加植物物种的多样性,随着恢复年限的增加物种的组成发生改变且多样性呈增加趋势,但一些特殊环境下不当的人工恢复可造成植被演替向退化方向发展,降低生物多样性。不同的植被类型由于其生长方式的不同对土壤理化性质和土壤微生物的影响存在差异,随着恢复年限的增长,土壤理化指标及微生物学指标呈现先增加而后趋于平稳的状态。针对已有的研究进展,提出在未来的研究过程中,一方面应该增加更多的对比研究,对不同环境下,不同的恢复物种,不同的恢复方式进行更深入地探讨;另外一方面应增加不同尺度的研究,现有的研究多集中在样地尺度,未来应在更大尺度上进行分析;再者,地上及地下生态系统之间的相互关系及影响机理一直是土壤学科研究的热点,植被恢复过程中应增加更多该方面的机理研究。     

Changes in microbial community characteristics and soil organic matter with nitrogen additions in two tropical forests

Microbial communities and their associated enzyme activities affect the amount and chemical quality of carbon (C) in soils. Increasing nitrogen (N) deposition, particularly in N-rich tropical forests, is likely to change the composition and behavior of microbial communities and feed back on ecosystem structure and function. This study presents a novel assessment of mechanistic links between microbial responses to N deposition and shifts in soil organic matter (SOM) quality and quantity. We used phospholipid fatty acid (PLFA) analysis and microbial enzyme assays in soils to assess microbial community responses to long-term N additions in two distinct tropical rain forests. We used soil density fractionation and 13C nuclear magnetic resonance (NMR) spectroscopy to measure related changes in SOM pool sizes and chemical quality. Microbial biomass increased in response to N fertilization in both tropical forests and corresponded to declines in pools of low-density SOM. The chemical quality of this soil C pool reflected ecosystem-specific changes in microbial community composition. In the lower-elevation forest, there was an increase in gram-negative bacteria PLFA biomass, and there were significant losses of labile C chemical groups (O-alkyls). In contrast, the upper-elevation tropical forest had an increase in fungal PLFAs with N additions and declines in C groups associated with increased soil C storage (alkyls). The dynamics of microbial enzymatic activities with N addition provided a functional link between changes in microbial community structure and SOM chemistry. Ecosystem-specific changes in microbial community composition are likely to have far-reaching effects on soil carbon storage and cycling. This study indicates that microbial communities in N-rich tropical forests can be sensitive to added N, but we can expect significant variability in how ecosystem structure and function respond to N deposition among tropical forest types.