潍坊、花园口土样中土著大豆根瘤菌的遗传多样性研究

采用１６Ｓ－２３Ｓ ｒＤＮＡ间隔区段（ＩＧＳ）ＲＦＬＰ分析和ＰＡＰＤ分析技术，分别对分离自山东潍坊和河南郑州花园口的２４株土著大豆根瘤菌进行２多样性分析。结果一 ７０％的相似性水平上，依ＩＧＳ－ＲＦＬＰ分析可将供试菌株分为１０群，依ＲＡＰＤ分析可将供试菌株分为８群。综合两种分析技术在５０５的相似性水平上将供试菌株分为潍坊群和花园口群。 在系统发育和分子进行上有明显的地理分隔作用。     

EoNPV的限制性酶切图谱及polyhedrin基因和egt基因的定位

用８种限制性内切酶酶解茶尺蠖Ｅｃｔｒｏｐｉｓｏｂｌｉｑｕａ核型多角体病毒（ＥｏＮＰＶ）基因组ＤＮＡ，获得大于０．８８ｋｂ的片段数分别为７、３８、１９、１７、１６、９、３２和１４．由此统计，基因组平均大小大于１１８．５ｋｂ，即Ｍｒ约大于７８．６×１０６．用ＢｍＮＰＶ的多角体蛋白（ｐｈ）基因和ＡｃＭＮＰＶ的ｅｇｔ基因为探针，应用Ｓｏｕｔｈｅｒｎ杂交方法，将ＥｏＮＰＶ的ｐｈ基因定位于ＢａｍＨＩＡ、ＣｌａＩＤ、ＥｃｏＲＩＭ、ＥｃｏＲＶＬ、ＨｉｎｄⅢＦ、ＰｓｔＩＡ、ＳａｌＩＨ和ＸｈｏＩＢ片段上，将ｅｇｔ基因定位于ＢａｍＨＩＡ、ＣｌａＩｌ、ＥｃｏＲＩＫ、ＥｃｏＲＶＡ、ＨｉｎｄⅢＨ、ＰｓｔＩＡ、ＳａｌＩＢ、ＸｈｏＩＩ片段上．通过克隆和酶切鉴定ＥｃｏＲＩＭ和ＥｃｏＲＶＬ片段，测定ｐｈ基因部分序列，并以ＥｃｏＲＩＭ为探针对基因组酶切印迹进行杂交，制作了ＥｏＮＰＶｐｈ基因和ｅｇｔ基因区的酶切图谱，推定ｅｇｔ基因保守区位于ｐｈ基因上游约４．５５ｋｂ处．     

一种由质粒编码的葡萄球菌素的特性

从５８株具不同质粒谱的抗生素抗药性金黄色葡萄球菌中经筛选得菌株８５０４１．它所产生的抗菌活性物质能抗热７５～８０℃１ｈ；对蛋白分解酶敏感，包括胰蛋白酶、蛋白酶Ｅ、蛋白酶Ｂ．Ｐ，抗ＤＮａｓｅ及ＲＮａｓｅ；抗菌谱显示，在４株葡萄球菌类中只对金黄色葡萄球菌２０９Ｐ有抗菌活性，而对４株肠道菌及枯草芽胞杆菌无作用．据此认为，该抗菌物质属细菌素（葡萄球菌素）．用ＳＤＳ及４３℃处理产细菌素菌株，进行质粒消除试验及其质粒ＤＮＡ琼脂糖凝胶电泳，证明菌株８５０４１有一个Ｍｒ≈２４．４×１０６的产细菌素质检．     

紫云英根瘤菌共生基因分布及其共生效应的多样性

从同一植株不同根瘤分离40株紫云英根瘤菌，所有菌株对10种抗生素的抗药性测定表明，该群体分为22个抗药类群，质粒检测显示所有公离株都含有质粒，质粒数1～4条，用快生型大豆根瘤菌USDA205质粒作参考，估测质粒Mr分布范围为83～226MU．根据图谱分析表明，该菌群可分为6个不同质粒型．各类型质粒通过与Dig-nodABC和Dig-nifHDK杂交，结果显示带有1条质粒的菌株其共生基因定位在染色体上．带有2条或2条以上质粒的菌株各拥有1条共生质粒，共生质粒Mr范围有差异，大约为117～220MU．研究结果也显示，不同质粒型的菌株其共生效应存在明显差异，其中第6质粒型的菌株共生固氮率最强，第1质粒型菌株共生固氮率较低．共生固氮能力最强的第6质粒型菌株，只占总菌数7．5％．     

固定CO2基因工程菌的构建

构建了含有ＲｕｂｉｓＣＯＦｏｒｍ ＩＩ基因的可转化大肠杆菌紫色非硫杆菌穿梭质粒（ＰＭＰＢ２）,将其转化紫色非硫杆菌野生型Ｒｈｏｄｏｐｓｅｕｄｏｍｏｎａｓｐａｌｕｓｔｒｉｓ Ｎｏ．７ 和紫色非硫杆菌ＲｕｂｉｓＣＯＦｏｒｍ Ｉ缺陷型ＲｈｏｄｏｐｓｅｕｄｏｍｏｎａｓｐａｌｕｓｔｒｉｓＮｏ．７ＤＦＩ,获得２ 株ＲｕｂｉｓＣＯ基因工程菌ＭＧ１１ 和ＭＧ１４,二者的ＲｕｂｉｓＣＯ 酶活性比对照菌分别提高７６ ．７％ 和８３．３％ ．连续传４０ 代表明,重组质粒在受体菌中是较稳定的     

邻苯二酚1,2-双加氧酶(C12O)基因的定位、克隆和表达

射性同位素标记ｔｆｄＣ基因片段作探针,Ｓｏｕｔｈｅｒｎｂｌｏｔ杂交定位Ｌ１菌株的邻苯二酚１,２双加氧酶基因位于ＰｓｔⅠ的Ｉ片段和ＢａｍＨⅠ的Ｍ和Ｎ片段．低熔点琼脂糖回收ＰｓｔⅠ的Ｉ段,直接克隆至表达载体ｐＫＴ２３０上,获得重组子ｐＫＴ２３０ｐ．重组子转化不具开环酶活性的甲胺磷降解菌Ｐ２,获得高效的Ｃ１２Ｏ酶活     

马氏甲烷八叠球菌S－6的一个染色体区段的表达、序列分析和结构分析

用一组多克隆抗体对马氏甲烷八叠球菌（Ｍｅｔｈａｎｏｓａｒｃｉｎａｍａｚｅｉ）Ｓ－６菌株的基因组ＤＮＡ文库进行了筛选．仅选出ｐ６０Ａ克隆能对马氏甲烷八叠球菌中可发生细胞形态学变化菌株的抗血清发生阳性反应．对ｐ６０Ａ克隆的双链ＤＮＡ进行了序列分析．识别出一开式阅读框架（ｏｐｅｎｒｅａｄｉｎｇｆｒａｍｅＰ，ＯＲＦＰ）．表达的蛋白是ＯＲＦＰ编码的蛋白的３倍，并得到ＯＲＦＰ蛋白的三聚体，在ＳＤＳ－ＰＡＧＥ中表现出整体蛋白的迁移行为．同时，此表达蛋白抗１０％ＳＤＳ，６ｍｏｌ／Ｌ尿素及热处理．基因结构分析表明，ＯＲＦＰ具有与Ｍ．ｂａｒｋｒｉｍｃｒＡ有同源性的核糖体结合位点和一个与甲烷细菌启动子共有序列相似度达７７％的启动子序列．使用参照序列分析表明，由ＯＲＦＰ演绎的氨基酸序列，具有高密度的带电荷的氨基酸和占优势的β－层迭构型．对此表达蛋白作了Ｎｅｕｒｏｓｒｏｒａｃｒａｓｓａ的ｐｏｒｉｎ蛋白抗血清试验，以研究其可能功能．检验了Ｍ．ｍａｚｅｉＳ－６细胞的蔗糖梯度制备物，对此原细胞中的ＯＲＦＰ蛋白作了定位．结果表明，ＯＲＦＰ蛋白可能是一种古细菌Ｐｏｒｉｎ，其在Ｍ．ｍａｚｅｉＳ－６中的表达，可能象大肠杆菌那样与渗透压调节有关．     

慢生型花生根瘤菌16S rRNA分析

以２１株分离自四川,云南不同花生产区的慢性型花生根瘤菌和６株参比菌株为材料,进行了１６ＳｒＤＮＡＰＣＲ－ＲＦＬＰ,结果除证实了慢性型花生根瘤菌同慢生型大豆根瘤菌（Ｂｒａｄｙｒｈｉｚｏｂｉｕｍｊａｐｏｎｉｃｕｍ）高度的遗传相似性外,还发现了一些菌株同Ｂｒａｄｙｒｈｉｚｏｉｂｉｕｍｌｉａｏｎｉｎｇｅｎｓｉｓ和Ｂｒａｄｙｒｈｉｚｏｂｉｕｍｅｌｋａｎｉｉ有较高的遗传相似性,菌株Ｓｐｒ１－２的１６ＳｒＲＮＡ     

微生物降解蔬菜残留农药研究

从富集培养物中筛选到以甲胺磷为唯一碳源生长的菌株ＮＭＪ５和以乐果为唯一碳源生长的菌株ＮＭＬ３，经鉴定分别为芽孢杆菌属（Ｂａｃｉｌｕｓｓｐ．）和假单胞菌属（Ｐｓｅｕｄｏｍｏｎａｓｓｐ．）．它们利用甲胺磷、乐果生长的最适条件及在无机盐培养基中农药最大耐受浓度分别为ｐＨ７．５，ｔ＝３５℃，ρ＝１０００ｍｇ／Ｌ和ｐＨ７．５，ｔ＝３０℃，ρ＝２０００ｍｇ／Ｌ．在无碳基础培养基内单菌株培养８ｄ，５２４ｍｇ／Ｌ的甲胺磷好气降解４２．５％，厌气降解３５．９％，２５０ｍｇ／Ｌ的乐果好气降解５０．２％，厌气降解１６．４％．小区试验表明，ＮＭＪ５、ＮＭＬ３的菌液制剂对普通白菜的变种南农矮脚黄（Ｂｒａｓｉｃａｃａｍｐｅｓｔｒｉｓｓｐ．ｃｈｉｎｅｎｓｉｓＬ．ｖａｒ．ｃｏｍｍｕｎｉｓＴｓｅｎｅｔＬｅｅ）中残留的甲胺磷、乐果有明显的去除作用．     

用假单胞菌(PSEUDOMONAS SP.)E4-106生物转化苯丙酮酸生产L-苯丙氨酸研究

用从土壤中筛选的假单胞菌（Ｐｓｅｕｄｏｍｏｎａｓｓｐ．）Ｅ４１０６株细胞进行了转化苯丙酮酸生产Ｌ苯丙氨酸实验研究．结果表明，转氨反应最适温度３５～４０℃；该转氨酶可在ｐＨ７～１０范围内催化反应而活力变化不大；０．５％戊二醛处理细胞可降低其转氨酶活力；表面活性剂处理细胞或在反应液中加入Ｍｇ２＋能显著提高转氨反应速度；Ｌ天冬氨酸是转氨反应的最适氨基供体；底物转化率与底物浓度、氨基供体浓度有关．在此反应体系中，Ｅ４１０６菌株单位湿重细胞的转氨酶活力为１０３９Ｕ／ｇ；生成产物ＬＰｈｅ浓度为３２．２ｇ／Ｌ和５０．４ｇ／Ｌ时，苯丙酮酸摩尔转化率分别为９７．５％、８７．２％．生成产物用ＣＧＡ６８８大孔吸附树脂进行分离、纯化．目标产物经熔点、比旋光度、元素分析、红外光谱和纸层析分析，证实是ＬＰｈｅ．产物收率为８１．８％．     

Achieving Open Access to Conservation Science

Conservation science is a crisis discipline in which the results of scientific enquiry must be made available quickly to those implementing management. We assessed the extent to which scientific research published since the year 2000 in 20 conservation science journals is publicly available. Of the 19,207 papers published, 1,667 (8.68%) are freely downloadable from an official repository. Moreover, only 938 papers (4.88%) meet the standard definition of open access in which material can be freely reused providing attribution to the authors is given. This compares poorly with a comparable set of 20 evolutionary biology journals, where 31.93% of papers are freely downloadable and 7.49% are open access. Seventeen of the 20 conservation journals offer an open access option, but fewer than 5% of the papers are available through open access. The cost of accessing the full body of conservation science runs into tens of thousands of dollars per year for institutional subscribers, and many conservation practitioners cannot access pay‐per‐view science through their workplace. However, important initiatives such as Research4Life are making science available to organizations in developing countries. We urge authors of conservation science to pay for open access on a per‐article basis or to choose publication in open access journals, taking care to ensure the license allows reuse for any purpose providing attribution is given. Currently, it would cost $51 million to make all conservation science published since 2000 freely available by paying the open access fees currently levied to authors. Publishers of conservation journals might consider more cost effective models for open access and conservation‐oriented organizations running journals could consider a broader range of options for open access to nonmembers such as sponsorship of open access via membership fees. Obtención de Acceso Abierto a la Ciencia de la Conservación     

Some polyphagous Homoptera gain protection from their natural enemies by feeding on the toxic plantsSpartium junceum andErythrina corallodendrum (Leguminosae)

Summary Interactions were studied among alkaloid-containing legumes (Erythrina corallodendrum andSpartium junceum) and non-toxic plants (Citrus sinensis, Cucurbita moschata andEuphorbia tirucalli), several polyphagous homopterans,Aphis craccivora (Aphididae),Icerya purchasi, I. aegyptiaca (Margarodidae),Lepidosaphes ulmi (Diaspididae) andPlanococcus citri (Pseudococcidae), and some major natural enemies of these homopterans. Significant reductions in survival due to negative effects of alkaloid containing as compared with non-alkaloidal plants were recorded for the predatorsRodolia cardinalis andChilocorus bipustulatus, but not forCryptolaemus montrouzieri (Coleoptera: Coccinellidae),Chrysoperla carnea (Neuroptera: Chrysopidae) andSympherobius sanctus (Neuroptera: Sympherobiidae). The development time of the larvae or pupae ofR. cardinalis, C. carnea andS. sanctus was longer on the toxic plants than on the non-toxic ones. The percentage of parasitism ofA. craccivora collected from the non-alkaloidal plantsVicia palaestina andMelilotus albus was much higher than that onS. junceum. The parasitoid complexes ofA. craccivora differed between both plant groups. The nutritive value of honeydew ofI. purchasi andA. craccivora, as expressed by the life span ofEncyrtus infelix (Hymenoptera: Encyrtidae) adults, was also investigated. Life spans were significantly longer when the wasps fed on honeydew produced on non-alkaloidal plants (C. sinensis andPittosporum tobira) than on alkaloid containing plants whenI. purchasi — but notA. craccivora — was the producer. It is suggested that the chemical defense ofE. corallodendrum andS. junceum is exploited by polyphagous phytophages to reduce predation. In nature, population growth and density of four of the investigated homopterans are conspicuously high when they developed on the alkaloid containing plant species, and very low on non-alkaloid plants. The efficiency of their natural enemies may be reduced by sequestration of alkaloids (or other toxic plant compounds) or their transfer into excreted honeydew. Therefore it is assumed that a generalist phytophagous homopteran may be protected from its natural enemies, although at different rates of efficiency, if it can safely sequester the host allelochemical when it develops on toxic species within its host range.     

Rapid,recurring, structured survey versus bioblitz for generating biodiversity data and analysis with a multispecies abundance model

A bioblitz inexpensively and quickly generates biodiversity data, but bioblitzes are often conducted with haphazard, unreplicated sampling. Results tend to be taxonomically, geographically, or temporally biased, lack metadata, and consist of lists of observed taxa that do not enable further analyses or correction for imperfect detection. A rapid, recurring, structured survey (RRSS) uses a structured sampling design and temporal and spatial replication to survey randomly selected sites on a conservation property. We participated in a loosely structured bioblitz and a subsequent RRSS at Big Canoe Creek Nature Preserve in Springville (St. Clair County), Alabama (USA) to compare observed richness derived from the 2 survey approaches. The RRSS data structure enabled us to fit models that accounted for imperfect detection to estimate abundances, occupancy probabilities, and habitat associations. The loosely structured bioblitz data could not be used in such models. We present a new integrated multispecies abundance model that we applied to avian RRSS data. Our model extension enables estimation for the community, employs data augmentation to estimate the number of undetected species, and incorporates covariates. The RRSS generated a more comprehensive and less biased list of observed taxonomic richness than the loosely structured bioblitz (e.g., 73 vs. 45 bird species and 104 vs. 63 insect families from the RRSS vs. loosely structured bioblitz, respectively). Models fit to the RRSS data identified seasonal patterns in avian community composition and allowed for estimation of habitat–occupancy relationships for insect taxa. The RRSS protocol has potential for broad transferability as a standardized, quick, and inexpensive way to inventory biodiversity and estimate ecological parameters while providing an outreach opportunity.     

Sequestration of cucurbitacin analogs by New and Old World chrysomelid leaf beetles in the tribe Luperini

Summary Two South American polyphagous leaf beetles,Diabrotica speciosa andCerotoma arcuata, selectively accumulated the bitter tasting compound 23,24-dihydrocucurbitacin D in their body after ingesting root tissues of cucurbit plants. Similarly, three Asian Cucurbitaceae-feeding specialists in the genusAulacophora were found to sequester the same compound. Cucurbitacin analogs were shown to deter feeding by a bird predator, indicating an allomonal role for these compounds in cucurbitacin-associated chrysomelid leaf beetles both of New and Old Worlds. The strong affinity to cucurbitacins, selective sequestration of the analogs and consequent protection from predators suggested an ecological adaptation mechanism developed in common among these two geographically isolated subtribes in the Luperini.     

Compliance with and ecosystem function of biodiversity offsets in North American and European freshwaters

Land-use change via human development is a major driver of biodiversity loss. To reduce these impacts, billions of dollars are spent on biodiversity offsets. However, studies evaluating offset project effectiveness that examine components such as the overall compliance and function of projects remain rare. We reviewed 577 offsetting projects in freshwater ecosystems that included the metrics project size, type of aquatic system (e.g., wetland and creek), offsetting measure (e.g., enhancement, restoration, and creation), and an assessment of the projects’ compliance and functional success. Project information was obtained from scientific and government databases and gray literature. Despite considerable investment in offsetting projects, crucial problems persisted. Although compliance and function were related to each other, a high level of compliance did not guarantee a high degree of function. However, large projects relative to area had better function than small projects. Function improved when projects targeted productivity or specific ecosystem features and when multiple complementary management targets were in place. Restorative measures were more likely to achieve targets than creating entirely new ecosystems. Altogether the relationships we found highlight specific ecological processes that may help improve offsetting outcomes.     

Effects of Controlled Fire and Livestock Grazing on Bird Communities in East African Savannas

Abstract: In East Africa fire and grazing by wild and domestic ungulates maintain savannas, and pastoralists historically set fires and herded livestock through the use of temporary corrals called bomas. In recent decades traditional pastoral practices have declined, and this may be affecting biodiversity. We investigated the effects of prescribed fires and bomas on savanna bird communities in East Africa during the first and second dry seasons of the year (respectively before and after the rains that mark the onset of breeding for most birds). We compared abundance, richness, and community composition on 9‐ha burned plots, recently abandoned bomas, and control plots in the undisturbed matrix habitat over a 3‐year period. Generally, recently burned areas and abandoned bomas attracted greater densities of birds and had different community assemblages than the surrounding matrix. The effects of disturbances were influenced by interactions between primary productivity, represented by the normalized difference vegetation index, and time. Bird densities were highest and a greater proportion of species was observed on burned plots in the months following the fires. Drought conditions equalized bird densities across treatments within 1 year, and individuals from a greater proportion of species were more commonly observed on abandoned bomas. Yearly fluctuations in abundance were less pronounced on bomas than on burns, which indicate that although fire may benefit birds in the short term, bomas may have a more‐lasting positive effect and provide resources during droughts. Several Palearctic migrants were attracted to burned plots regardless of rainfall, which indicates continued fire suppression may threaten their already‐declining populations. Most notably, the paucity of birds observed on the controls suggests that the current structure of the matrix developed as a result of fire suppression. Traditional pastoralism appears critical to the maintenance of avian diversity in these savannas.     

A palaeo-hydrogeological model for arsenic contamination in southern and south-east Asia

An argument is presented in which areas of natural arsenic contamination of modern groundwaters throughout Asia have a common origin. Arsenic originally accumulated in oceanic ferro-manganoan sediments of the eastern Palaeo-Tethys. This was further concentrated through oceanic crustal extinction in what later became the south-east Chinese accreted mineralised terrain. Proto-Himalayan uplift of this area created the palaeo-drainage systems of the Ganges – Brahmaputra, Irrawaddy, Mekong, and Red Rivers, with consequent headwater erosion of arsenic-rich sediments. Their downstream deposition as immature and easily redistributed Neogene sandstones, silts, and iron-rich clays has created secondary and tertiary reservoirs of adsorbed and authigenic arsenic, from which the current arsenic-rich groundwaters have evolved. Considering river basins within the above palaeo-hydrogeological framework provides a basis for assessing the risk of arsenic in groundwater basins of south and south-eastern Asia.     

Threats to intact tropical peatlands and opportunities for their conservation

Large, intact areas of tropical peatland are highly threatened at a global scale by the expansion of commercial agriculture and other forms of economic development. Conserving peatlands on a landscape scale, with their hydrology intact, is of international conservation importance to preserve their distinctive biodiversity and ecosystem services and maintain their resilience to future environmental change. We explored threats to and opportunities for conserving remaining intact tropical peatlands; thus, we excluded peatlands of Indonesia and Malaysia, where extensive deforestation, drainage, and conversion to plantations means conservation in this region can protect only small fragments of the original ecosystem. We focused on a case study, the Pastaza‐Marañón Foreland Basin (PMFB) in Peru, which is among the largest known intact tropical peatland landscapes in the world and is representative of peatland vulnerability. Maintenance of the hydrological conditions critical for carbon storage and ecosystem function of peatlands is, in the PMFB, primarily threatened by expansion of commercial agriculture linked to new transport infrastructure that is facilitating access to remote areas. There remain opportunities in the PMFB and elsewhere to develop alternative, more sustainable land‐use practices. Although some of the peatlands in the PMFB fall within existing legally protected areas, this protection does not include the most carbon‐dense (domed pole forest) areas. New carbon‐based conservation instruments (e.g., REDD+, Green Climate Fund), developing markets for sustainable peatland products, transferring land title to local communities, and expanding protected areas offer pathways to increased protection for intact tropical peatlands in Amazonia and elsewhere, such as those in New Guinea and Central Africa which remain, for the moment, broadly beyond the frontier of commercial development.     

What Every Conservation Biologist Should Know about Economic Theory

Abstract: The last century has seen the ascendance of a core economic model, which we will refer to as Walrasian economics. This model is driven by the psychological assumptions that humans act only in a self‐referential and narrowly rational way and that production can be described as a self‐contained circular flow between firms and households. These assumptions have critical implications for the way economics is used to inform conservation biology. Yet the Walrasian model is inconsistent with a large body of empirical evidence about actual human behavior, and it violates a number of basic physical laws. Research in behavioral science and neuroscience shows that humans are uniquely social animals and not self‐centered rational economic beings. Economic production is subject to physical laws including the laws of thermodynamics and mass balance. In addition, some contemporary economic theory, spurred by exciting new research in human behavior and a wealth of data about the negative global impact of the human economy on natural systems, is moving toward a world view that places consumption and production squarely in its behavioral and biophysical context. We argue that abandoning the straightjacket of the Walrasian core is essential to further progress in understanding the complex, coupled interactions between the human economy and the natural world. We call for a new framework for economic theory and policy that is consistent with observed human behavior, recognizes the complex and frequently irreversible interaction between human and natural systems, and directly confronts the cumulative negative effects of the human economy on the Earth's life support systems. Biophysical economics and ecological economics are two emerging economic frameworks in this movement.