Consequences of Buffelgrass Pasture Development for Primary Productivity,Perennial Plant Richness,and Vegetation Structure in the Drylands of Sonora,Mexico

Abstract: In large parts of northern Mexico native plant communities are being converted to non‐native buffelgrass (Pennisetum ciliare) pastures, and this conversion could fundamentally alter primary productivity and species richness. In Sonora, Mexico land conversion is occurring at a regional scale along a rainfall‐driven gradient of primary productivity, across which native plant communities transition from desert scrub to thorn scrub. We used a paired sampling design to compare a satellite‐derived index of primary productivity, richness of perennial plant species, and canopy‐height profiles of native plant communities with buffelgrass pastures. We sampled species richness across a gradient of primary productivity in desert scrub and thorn scrub vegetation to examine the influence of site productivity on the outcomes of land conversion. We also examined the influence of pasture age on species richness of perennial plants. Index values of primary productivity were lower in buffelgrass pastures than in native vegetation, which suggests a reduction in primary productivity. Land conversion reduced species richness by approximately 50% at local and regional scales, reduced tree and shrub cover by 78%, and reduced canopy height. Land conversion disproportionately reduced shrub species richness, which reflects the common practice among Sonoran ranchers of conserving certain tree and cactus species. Site productivity did not affect the outcomes of land conversion. The age of a buffelgrass pasture was unrelated to species richness within the pasture, which suggests that passive recovery of species richness to preconversion levels is unlikely. Our findings demonstrate that land conversion can result in large losses of plant species richness at local and regional scales and in substantial changes to primary productivity and vegetation structure, which casts doubt on the feasibility of restoring native plant communities without active intervention on the part of land managers.     

Long‐Term Dynamics of a Fragmented Rainforest Mammal Assemblage

Abstract: Habitat fragmentation is a severe threat to tropical biotas, but its long‐term effects are poorly understood. We evaluated longer‐term changes in the abundance of larger (>1 kg) mammals in fragmented and intact rainforest and in riparian “corridors” in tropical Queensland, with data from 190 spotlighting surveys conducted in 1986–1987 and 2006–2007. In 1986–1987 when most fragments were already 20–50 years old, mammal assemblages differed markedly between fragmented and intact forest. Most vulnerable were lemuroid ringtail possums (Hemibelideus lemuroides), followed by Lumholtz's tree‐kangaroos (Dendrolagus lumholtzi) and Herbert River ringtail possums (Pseudocheirus herbertensis). Further changes were evident 20 years later. Mammal species richness fell significantly in fragments, and the abundances of 4 species, coppery brushtail possums (Trichosurus vulpecula johnstoni), green ringtail possums (Pseudochirops archeri), red‐legged pademelons (Thylogale stigmatica), and tree‐kangaroos, declined significantly. The most surprising finding was that the lemuroid ringtail, a strict rainforest specialist, apparently recolonized one fragment, despite a 99.98% decrease in abundance in fragments and corridors. A combination of factors, including long‐term fragmentation effects, shifts in the surrounding matrix vegetation, and recurring cyclone disturbances, appear to underlie these dynamic changes in mammal assemblages.     

Accumulation of cadmium and zinc in <Emphasis Type="Italic">Evodiopanax innovans</Emphasis>

The use of tree species for phytoremediation of contaminated soil offers the advantage of a large biomass in which to store contaminants. We investigated the cadmium (Cd) and zinc (Zn) accumulation ability of Evodiopanax innovans, a common deciduous tree species belonging to the Araliaceae family and widely found in secondary forests in Japan. Sampling was conducted at an old silver mine. Leaf samples were collected from nine tree species, including E. innovans. The seasonal variation of metal concentrations in the leaves and the detailed distribution of metals in the leaves and twigs of E. innovans were measured. We also analyzed the contents of organic acids in the leaves. The highest concentration of Cd in the leaves of E. innovans was 118 μg/g, which exceeds the threshold level for being considered a Cd hyperaccumulator (100 μg/g). For Zn, the highest value was 1040 μg/g in leaves, which is less than required to qualify as a Zn hyperaccumulator. Both Cd and Zn were found to accumulate in the petioles and veins of leaves and the bark of twigs. Since the oxalic acid content of leaves showed a weak correlation with Cd concentration, oxalic acid may play an important role in the accumulation of Cd. Taking both the Cd concentration level and the biomass of this woody plant into consideration, it may be possible to use E. innovans for the phytoremediation of Cd-contaminated soils.     

Evaluating pollution-related damage and restoration success in urban forests with participatory monitoring and digital tools

Peri-urban forest monitoring requires indicators of vegetation damage. An example is the sacred fir (Abies religiosa) forests surrounding Mexico City, which have been heavily exposed to tropospheric ozone, a harmful pollutant, for over 4 decades. We developed a participatory monitoring system with which local community members and scientists generated data on ozone tree damage. Santa Rosa Xochiac rangers (13) used the digital tool KoboToolBox to record ozone damage to trees, tree height, tree ages, tree condition, tree position, and whether the tree had been planted. Thirty-five percent of the trees (n = 1765) had ozone damage. Younger trees had a lower percentage of foliage damaged by ozone than older trees (p < 0.0001), and asymptomatic trees tended to be younger (p < 0.0001). Symptomatic trees were taller than asymptomatic trees of the same age (R²_c = 0.43, R²_m = 0.27). Involving local communities facilitated forest monitoring and using digital technology improved data quality. This participatory system can be used to monitor forest condition change over time and thus aids restoration efforts driven by government or local communities’ interests, facilitating local decision-making.     

Cytochrome <Emphasis Type="Italic">b</Emphasis> (<Emphasis Type="Italic">Cyt-b</Emphasis>) gene sequence analysis in six flatfish species (Teleostei,Pleuronectidae), with phylogenetic and taxonomic insights

Mitochondrial DNA (mtDNA) at Cyt-b gene region was sequenced for six flatfish species (in total nine sequences of at least 1,117 bp) from the Far East of Russia and compared with other sequences of Pleuronectiformes comprising altogether 34 species and 3 outgroup species (Perciformes). Analysis of the protein-coding Cyt-b gene revealed a statistically substantiated bias in (T + C):(A + G) content, supporting earlier findings. Values of P-distances, as summarized for different scales of the evolutionary history at Cyt-b gene, revealed a clear pattern of increased nucleotide diversity at four different phylogenetic levels: (1) intraspecies, (2) intragenus, (3) intrafamily, and (4) intraorder. Scores of average P-distances of the four categories of comparison in flatfishes were (1) 0.46 ± 0.19%, (2) 11.74 ± 2.26%, (3) 17.51 ± 3.13%, and (4) 25.60 ± 0.42%, respectively (mean ± SE). These data support the concept that speciation in the order Pleuronectiformes, in most cases, follows a geographic mode through the accumulation of numerous small genetic changes over a long period of time. A phylogenetic tree for 64 sequences of flatfishes and 3 other fishes belonging to ray-finned fishes (Actinopterigii) was developed using Cyt-b gene and four different analytical approaches: neighbour-joining (NJ), Bayesian (BA), maximum parsimony (MP), and maximum likelihood (ML). The analysis revealed a monophyletic origin for the representatives of Pleuronectidae, which is the principal flatfish family investigated (99% repetition level in our BA analysis). A well supported property of the phylogenetic tree was the monophyletic placement of all the five flatfish families and the order Pleuronectiformes among other representatives of ray-finned fishes of the class Actinopterigii. Species identification on per individual basis (barcoding tagging) was generally high. However, there were taxonomic complications that arose during analysis, and they are discussed. Major outcomes of this discussion are the necessity of synonymy acceptance for Hippoglossoides elassodon, and H. robustus, and for Pseudopleuronectes yokohamae and P. schrenki. Priority considerations suggest H. elassodon and P. yokohamae as valid species names.     

Use of carrion fly iDNA metabarcoding to monitor invasive and native mammals

Severely fragmented habitats increase the risk of extirpation of native mammal populations through isolation, increased edge effects, and predation. Therefore, monitoring the movement of mammal populations through anthropogenically altered landscapes can inform conservation. We used metabarcoding of invertebrate-derived DNA (iDNA) from carrion flies (Calliphoridae and Sarcophagidae) to track mammal populations in the wheat belt of southwestern Australia, where widespread clearing for agriculture has removed most of the native perennial vegetation and replaced it with an agricultural system. We investigated whether the localization of the iDNA signal reflected the predicted distribution of 4 native species—echidna (Tachyglossus aculeatus), numbat (Myrmecobius fasciatus), woylie (Bettongia penicillata), and chuditch (Dasyurus geoffroii)—and 2 non-native, invasive mammal species—fox (Vulpes vulpes) and feral cat (Felis catus). We collected bulk iDNA samples (n = 150 samples from 3428 carrion flies) at 3 time points from 3 conservation reserves and 35 road edges between them. We detected 14 of the 40 mammal species known from the region, including our target species. Most detections of target taxa were in conservation reserves. There were a few detections from road edges. We detected foxes and feral cats throughout the study area, including all conservation reserves. There was a significant difference between the diversity (F_3, 98 = 5.91, p < 0.001) and composition (F_3, 43 = 1.72, p < 0.01) of taxa detections on road edges and conservation reserves. Conservation reserves hosted more native biodiversity than road edges. Our results suggest that the signals from iDNA reflect the known distribution of target mammals in this region. The development of iDNA methods shows promise for future noninvasive monitoring of mammals. With further development, iDNA metabarcoding could inform decision-making related to conservation of endangered taxa, invasive species management, and impacts of habitat fragmentation.     

Presence of Alexandrium catenella and paralytic shellfish toxins in finfish, shellfish and rock crabs in Monterey Bay, California, USA

The central California coast is a highly productive, biodiverse region that is frequently affected by the toxin-producing dinoflagellate Alexandrium catenella. Despite the consistent presence of A. catenella along our coast, very little is known about the movement of its toxins through local marine food webs. In the present study, we investigated 13 species of commercial finfish and rock crabs harvested in Monterey Bay, California for the presence of paralytic shellfish toxins (PSTs) and compared them to the presence of A. catenella and PSTs in sentinel shellfish over a 3-year period. Between 2003 and 2005, A. catenella was noted in 55% of surface water samples (n = 307) and reached a maximum concentration of 17,387 cells L⁻¹ at our nearshore site in Monterey Bay. Peak cell densities occurred in the month of July and were associated with elevated shellfish toxicity in the summers of 2004 and 2005. When A. catenella was present, particulate PSTs were detected 71% of the time and reached a maximum concentration of 962 ng STXeq L⁻¹. Of the 13 species tested, we frequently detected PSTs in Pacific sardines (Sardinops sagax; maximum 250 μg STXeq 100 g⁻¹), northern anchovies (Engraulis mordax; maximum 23.2 μg STXeq 100 g⁻¹), brown rock crabs (Cancer antennarius; maximum 49.3 μg STXeq 100 g⁻¹) and red rock crabs (C. productus; 23.8 μg STXeq 100 g⁻¹). PSTs were also present in one sample of Pacific herring (Clupea pallas; 13.3 μg STXeq 100 g⁻¹) and one sample of English sole (Pleuronectes vetulus; 4.5 μg STXeq 100 g⁻¹), and not detected in seven other species of flatfish tested. The presence of PSTs in several of these organisms reveals that toxins produced by A. catenella are more prevalent in California food webs than previously thought and also indicates potential routes of toxin transfer to higher trophic levels. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Ultrastructure of pedal muscle as a function of temperature in nacellid limpets

Temperature and mitochondrial plasticity are well studied in fishes, but little is known about this relationship in invertebrates. The effects of habitat temperature on mitochondrial ultrastructure were examined in three con-familial limpets from the Antarctic (Nacella concinna), New Zealand (Cellana ornata), and Singapore (Cellana radiata). The effects of seasonal changes in temperature were also examined in winter and summer C. ornata. Stereological methods showed that limpet pedal myocytes were 1–2 orders of magnitude smaller in diameter (≈3.5 μm) than in vertebrates, and that the diameter did not vary as a function of temperature. Mitochondrial volume density (Vv_(mt,f)) was approximately 2–4 times higher in N. concinna (0.024) than in the other species (0.01 and 0.006), which were not significantly different from each other. Mitochondrial cristae surface density (Sv_(im,mt)) was significantly lower in summer C. ornata (24.1 ± 0.50 μm² μm⁻³) than both winter C. ornata (32.3 ± 0.95 μm² μm⁻³) and N. concinna (34.3 ± 4.43 μm² μm⁻³). The surface area of mitochondrial cristae per unit fibre volume was significantly higher in N. concinna, due largely to the greater mitochondrial volume density. These results and previous studies indicate that mitochondrial proliferation in the cold is a common, but not universal response by different species from different thermal habitats. Seasonal temperature decreases on the other hand, leading preferentially to an increase in cristae surface density. Stereological measures also showed that energetic reserves, i.e. lipid droplets and glycogen in the pedal muscle changed greatly with season and species. This was most likely related to gametogenesis and spawning.     

Climatic effects on the growth of a temperate reef fish from the Southern Hemisphere: a biochronological approach

Increments in the hard parts of marine organisms (otoliths, skeletons, shells) can provide long-term chronologies of growth analogous to tree rings. For the first time in the Southern Hemisphere, we use a dendrochronological (tree-ring analysis) approach to develop a multidecadal chronology of growth for a temperate reef fish, Girella tricuspidata, from the coast of northern New Zealand. Growth patterns in the otoliths of this species were strongly synchronous among individual fish over a period spanning 27 years (1980–2006). We then compared our otolith chronology to climatic records and found strong positive correlations of growth with sea surface temperature, and weak negative correlations with the multivariate El Nino Southern Oscillation (ENSO) index. Strongest correlations were found between summer sea surface temperature and otolith growth. This relationship was consistent across all years and explained 44 % of the variation (y = −2.0 + 0.1785 × temperature, r ² = 0.4367, P = 0.0002) in the G. tricuspidata growth chronology. Our study illustrates how otolith chronologies provide remarkable records of annual growth patterns over decadal time scales that will be useful for forecasting the likely effects of climate change on marine ecosystems.     

Stable isotopic evidence for trophic groupings and bio-regionalization of predators and their prey in oceanic waters off eastern Australia

Muscle tissue was collected for stable isotope analysis (SIA) from the main fish predators and their fish and cephalopod prey from oceanic waters off eastern Australia between 2004 and 2006. SIA of δ¹⁵N and δ¹³C revealed that the species examined could be divided into three main trophic groups. A “top predator” group consisted mainly of large billfish (Xiphias gladius and Tetrapturus audax), yellowfin (Thunnus albacares), bigeye (T. obesus) and southern bluefin (T. maccoyii) tunas and sharks; with mako (Isurus oxyrinchus) the highest. Below this tier was a second group composed of mid-trophic level fishes including albacore tuna (Thunnus alalunga), lancet fish (Alepisaurus ferox), mahi mahi (Coryphaena hippuris) and ommastrephid squid. Underlying both groups was a grouping of small fishes including myctophids, small scombrids and nomeids as well as surface fishes including macrorhamphosids. These groupings were based largely on mean animal size which showed a positive linear relation to δ¹⁵N (r ² = 0.58). Some species showed significant ontogenetic variation in either δ¹⁵N (swordfish, lancet fish, yellowfin and albacore tuna) or δ¹³C (mako shark). We also noted a consistent latitudinal change in δ¹⁵N and δ¹³C at ~28°S for the top predator species, particularly albacore and yellowfin tuna. The differences were consistent with a change from oligotrophic Coral Sea to nutrient rich Tasman Sea waters. These differences suggest that predatory fishes may have extended residence time in distinct regions off eastern Australia.     

Land‐Cover Change and Avian Diversity in the Conterminous United States

Abstract: Changes in land use and land cover have affected and will continue to affect biological diversity worldwide. Yet, understanding the spatially extensive effects of land‐cover change has been challenging because data that are consistent over space and time are lacking. We used the U.S. National Land Cover Dataset Land Cover Change Retrofit Product and North American Breeding Bird Survey data to examine land‐cover change and its associations with diversity of birds with principally terrestrial life cycles (landbirds) in the conterminous United States. We used mixed‐effects models and model selection to rank associations by ecoregion. Land cover in 3.22% of the area considered in our analyses changed from 1992 to 2001, and changes in species richness and abundance of birds were strongly associated with land‐cover changes. Changes in species richness and abundance were primarily associated with changes in nondominant types of land cover, yet in many ecoregions different types of land cover were associated with species richness than were associated with abundance. Conversion of natural land cover to anthropogenic land cover was more strongly associated with changes in bird species richness and abundance than persistence of natural land cover in nearly all ecoregions and different covariates were most strongly associated with species richness than with abundance in 11 of 17 ecoregions. Loss of grassland and shrubland affected bird species richness and abundance in forested ecoregions. Loss of wetland was associated with bird abundance in forested ecoregions. Our findings highlight the value of understanding changes in nondominant land cover types and their association with bird diversity in the United States.     

Field based speciation of arsenic in UK and Argentinean water samples

A field method is reported for the speciation of arsenic in water samples that is simple, rapid, safe to use beyond laboratory environments, and cost effective. The method utilises solid-phase extraction cartridges (SPE) in series for selective retention of arsenic species, followed by elution and measurement of eluted fractions by inductively coupled plasma mass spectrometry (ICP-MS) for “total” arsenic. The method is suitable for on-site separation and preservation of arsenic species from water. Mean percentage accuracies (n = 25) for synthetic solutions of arsenite (As^III), arsenate (As^V), monomethylarsonic acid (MA), and dimethylarsinic acid (DMA) containing 10 μg l⁻¹ As, were 98, 101, 94, and 105%, respectively. Data are presented to demonstrate the effect of pH and competing anions on the retention of the arsenic species. The cartridges were tested in the UK and Argentina at sites where arsenic was known to be present in surface and groundwaters, respectively, at elevated concentrations and under challenging matrix conditions. In Argentinean groundwater, 4–20% of speciated arsenic was present as MA and 20–73% as As^III. In UK surface waters, speciated arsenic was measured as 7–49% MA and 12–42% DMA. Comparative data from the field method using SPE cartridges and the laboratory method using liquid chromatography coupled to ICP-MS for all water samples provided a correlation of greater than 0.999 for As^III and DMA, 0.991 for MA, and 0.982 for As^V (P < 0.01).     

Benthic macrophyte communities in the Ghar El Melh lagoon (North Tunisia)

This work deals with the biodiversity and distribution of benthic macrophytes in the Ghar El Melh lagoon, a Mediterranean coastal lagoon located in the North of Tunisia. An inventory was made of the benthic flora and submerged macrophyte communities were mapped during two successive campaigns (the summer of 1999 and the winter of 2000). The following 24 macrophyte species were identified: seven red algae, two brown algae, 11 green algae, and four marine angiosperms. The results were compared with available data from the literature. Ruppia cirrhosa is the most dominant species. It is found in all lagoon parts, except in the west sector.Ruppia beds are usually associated withCladophora forming heterogeneous communities. During summerRuppia cirrhosa shows a large distribution, covering an area of ca. 21.4 km², with dense, extensive beds covering 80–100%. In winter, severalCladophora species have a very large distribution as well, covering nearly an area of 28.5 km² with an average cover of 46%. The green algaeCaulerpa prolifera is confined to the eastern part of the lagoon which is mainly affected by seawater. In comparison with previous situations, many transformations were observed in biodiversity and spatial distribution of the dominant communities. Thus,Cymodocea nodosa andZostera beds, which dominated in the 1970s, were replaced byZostera andCaulerpa prolifera in the 1980s and are currently succeeded byRuppia cirrhosa andCladophora. Restoration of the Ghar El Melh lagoon will enable an increase in the exchange with the open sea and the circulation of water, in particular in the confined zones. This should considerably improve the water quality and would positively influence the phytobenthic communities.     

Assessment of total and organic vanadium levels and their bioaccumulation in edible sea cucumbers: tissues distribution,inter-species-specific,locational differences and seasonal variations

The objective of this study is to investigate the levels, inter-species-specific, locational differences and seasonal variations of vanadium in sea cucumbers and to validate further several potential factors controlling the distribution of metals in sea cucumbers. Vanadium levels were evaluated in samples of edible sea cucumbers and were demonstrated exhibit differences in different seasons, species and sampling sites. High vanadium concentrations were measured in the sea cucumbers, and all of the vanadium detected was in an organic form. Mean vanadium concentrations were considerably higher in the blood (sea cucumber) than in the other studied tissues. The highest concentration of vanadium (2.56 μg g⁻¹), as well as a higher degree of organic vanadium (85.5 %), was observed in the Holothuria scabra samples compared with all other samples. Vanadium levels in Apostichopus japonicus from Bohai Bay and Yellow Sea have marked seasonal variations. Average values of 1.09 μg g⁻¹ of total vanadium and 0.79 μg g⁻¹ of organic vanadium were obtained in various species of sea cucumbers. Significant positive correlations between vanadium in the seawater and V _org in the sea cucumber (r = 81.67 %, p = 0.00), as well as between vanadium in the sediment and V _org in the sea cucumber (r = 77.98 %, p = 0.00), were observed. Vanadium concentrations depend on the seasons (salinity, temperature), species, sampling sites and seawater environment (seawater, sediment). Given the adverse toxicological effects of inorganic vanadium and positive roles in controlling the development of diabetes in humans, a regular monitoring programme of vanadium content in edible sea cucumbers can be recommended.

     

Impact of bias in predicted height on tree volume estimation: A case-study of intrinsic nonlinearity

Bias originating from intrinsic nonlinearity in nonlinear models is caused by excess curvature in the solution locus of parameter estimates derived from least squares procedures. Bias due to intrinsic nonlinearity varies according to sample size as well as model specification. This paper analyses consequences of fractionising data into smaller sub-samples. Based on measurements of stem diameter and total tree height from the first Danish national forest inventory, it is demonstrated how data splitting at random may cause the intrinsic nonlinear curvature to exceed the critical F-value. Application of a Taylor-series expansion shows that, for all practical purposes, the bias in predictions of individual tree volume (based on stem diameter and tree height) is negligible. To minimize residual variance, intrinsic curvature and, in turn, prediction bias, it is recommended that data be stratified according to site conditions, stand characteristics or other relevant criteria. Finally, the preferred model should exhibit close-to-linear behaviour.     

Identification and field bioassays of the sex pheromone of the yellow-legged clearwing Synanthedon vespiformis (Lepidoptera: Sesiidae)

The yellow-legged clearwing (YLC) Synanthedon vespiformis (Lepidoptera: Sesiidae) occurs in the Mediterranean and central Europe. It is polyphagous, boring into the woody parts of broadleaf species including forest trees as well as various Rosaceae species. S. vespiformis has been reported as an economically important pest causing severe injury to stone fruit plantations. Many attractants for sesiid species were discovered by random field screening using 2,13- and 3,13-octadecadienyl alcohols, acetates and aldehydes, including one for S. vespiformis; and about 20 sex pheromones of sesiids have been identified so far. In the present study we identified the natural composition of the sex pheromone of YLC laboratory reared females as a blend of E3,Z13- and Z3,Z13-octadecadienyl acetates, at a ratio of 4:1. We developed an efficient lure for monitoring the pest. Pheromone funnel traps with rubber septa, impregnated with 1 mg pheromone blend, efficiently captured males for 10 weeks. Suspension of Shin-Etsu^? ropes containing a 2:1 blend of E3,Z13-18:Ac and Z3,Z13-18:Ac at 13.74 mg/ha/h, resulted in shutdown of trap catches in the treated plots and closely situated neighboring plots indicating that mating disruption is feasible.     

Availability of ammonium influences photosynthesis and the accumulation of mycosporine-like amino acids in two<Emphasis Type="Italic"> Porphyra</Emphasis> species (Bangiales,Rhodophyta)

The effect of ammonium concentration on photosynthetic activity estimated as in vivo chlorophyll fluorescence, i.e. maximal quantum yield (F_v/F_m) and electron transport rate (ETR) and on the accumulation of mycosporine-like amino acids (MAAs), chlorophyll a (chl a), biliproteins (BP) and soluble proteins (SP) in the red algae Porphyra leucosticta Thuret in Le Jolis collected from Lagos (Málaga, Spain) and Porphyra umbilicalis (Linnaeus) J. Agardh from Helgoland (Germany) was evaluated. Discs of both species were incubated with three ammonium concentrations (0, 100 and 300 µM) under artificial PAR and UV radiation for 7 days. Photosynthetic activity decreased under the culture conditions due to UV radiation and ammonium availability. The decrease of both F_v/F_m and maximal ETR was related to ammonium supply, i.e. the lowest decrease occurred in algae growing with the highest concentration of ammonium. In both species, after 7 days of culture, the content of chl a, BP and SP was higher under 300 µM than that under 0 and 100 µM ammonium. In both species, the content of MAAs was increased under 300 µM ammonium compared to the initial value, whereas a decrease under 0 and 100 µM ammonium was observed only in P. leucosticta. The content of MAAs in P. umbilicalis did not present significant differences compared to the initial value, probably because of the high initial content of MAAs. In both Porphyra species, four MAAs were identified: shinorine, porphyra-334, palythine and asterina-330. However, P. leucosticta modified its MAA pattern during the incubation time, reaching the same percentages found for P. umbilicalis, which did not show any change during the experimental period. P. leucosticta exhibited a decrease in BP/SP and BP/chl a ratios through the incubation time and an increase in MAAs/BP. The ratio MAAs/chl a did not show any variation with time or treatment, as was also true for all ratios in P. umbilicalis. In summary, ammonium supply diminished the decrease of F_v/F_m, increased the content of photosynthetic pigments (chlorophyll and biliprotein) and soluble protein, and stimulated of the accumulation of MAAs in the red algae P. leucosticta and P. umbilicalis.Communicated by O. Kinne, Oldendorf/Luhe     

PIXGRO: A model for simulating the ecosystem CO2 exchange and growth of spring barley

A model, PIXGRO, developed by coupling a canopy flux sub-model (PROXEL_NEE; PROcess-based piXEL Net Ecosystem CO₂ Exchange) to a vegetation structure submodel (CGRO), for simulating both net ecosystem CO₂ exchange (NEE) and growth of spring barley is described. PIXGRO is an extension of the stand-level CO₂ and H₂O-flux model PROXEL_NEE, that simulates the NEE on a process basis, but goes further to include the dry matter production, partitioning, and crop development for spring barley. Dry matter partitioned to the leaf was converted to leaf area index (LAI) using relationships for the specific leaf area (SLA). The canopy flux component, PROXEL_NEE was calibrated using information from the literature on C3 plants and was tested using CO₂ flux data from an eddy-covariance (EC) method in Finland with long-term observations. The growth component (CGRO) was calibrated using data from the literature on spring barley as well as data from the Finland site. It was then validated against field data from two sites in Germany and partly via the use of MODIS remotely sensed LAI from the Finland site.Both the diurnal and the seasonal patterns of gross CO₂ uptake were very well simulated (R² = 0.92). A slight seasonal bias may be attributed to leaf ageing. Crop growth was also well simulated; simulated dry matter agreed with field observed data from Germany (R² = 0.90). For LAI, the agreement between the simulated and observed was good (R² = 0.80), giving an indication that functions describing the conversion of fixed CO₂ to dry matter and the subsequent partitioning leaf dry matter and LAI simulation were robust and provided reliable estimates.The MODIS LAI at a resolution of 1000 m agreed poorly (R² = 0.45) with the PIXGRO simulated LAI and the observed LAI at the Finland site in 2001. We attributed this to the coarse resolution of the image and/or the small size of the barley field (about 17 ha or 0.25 km²) at the Finland site. By deriving a regression relation between the observed LAI and NDVI from a higher resolution MODIS (500 m resolution), the MODIS-recalculated LAI agreed better with the PIXGRO-simulated LAI (R² = 0.86).PIXGRO provides a prototype model bridging the disciplines of plant physiology, crop modeling and remote sensing, for use in a spatial context in evaluating carbon balances and plant growth at stand level, landscape, regional, and with some care, continental scales. Since almost 50% of the European land surface is covered by crops, such a model is needed for the dynamic estimation of LAI and NEE of croplands.     

Predicting structural complexity of reefs and fish abundance using acoustic remote sensing (RoxAnn)

This study determined whether the acoustic roughness of Caribbean reef habitats is an accurate proxy for their topographic complexity and a significant predictor of their fish abundance. Fish abundance was measured in 25 sites along the forereef of Glovers Atoll (Belize). At each site, in situ rugosity (ISR) was estimated using the “chain and tape” method, and acoustic roughness (E1) was acquired using RoxAnn. The relationships between E1 and ISR, and between both E1 and ISR and the abundance of 17 common species and the presence of 10 uncommon species were tested. E1 was a significant predictor of the topographic complexity (r ² = 0.66), the abundance of 10 common species of surgeonfishes, pomacentrids, scarids, grunts and serranids and the presence of 4 uncommon species of pomacentrids and snappers. Small differences in E1 (i.e. ∆0.05–0.07) reflected in subtle but significant differences in fish abundance (~1 individual 200 m⁻² and 116 g 200 m⁻²) among sites. Although we required the use of IKONOS data to obtain a large number of echoes per site, future studies will be able to utilise RoxAnn data alone to detect spatial patterns in substrate complexity and fish abundance, provided that a minimum of 50 RoxAnn echoes are collected per site.