Predominance of clade D <Emphasis Type="Italic">Symbiodinium</Emphasis> in shallow-water reef-building corals off Kish and Larak Islands (Persian Gulf,Iran)

Scleractinian coral species harbour communities of photosynthetic taxa of the genus Symbiodinium. As many as eight genetic clades (A, B, C, D, E, F, G and H) of Symbiodinium have been discovered using molecular biology. These clades may differ from each other in their physiology, and thus influence the ecological distribution and resilience of their host corals to environmental stresses. Corals of the Persian Gulf are normally subject to extreme environmental conditions including high salinity and seasonal variation in temperature. This study is the first to use molecular techniques to identify the Symbiodinium of the Iranian coral reefs to the level of phylogenetic clades. Samples of eight coral species were collected at two different depths from the eastern part of Kish Island in the northern Persian Gulf, and Larak Island in the Strait of Hormuz. Partial 28S nuclear ribosomal (nr) DNA of Symbiodinium (D1/D2 domains) were amplified by polymerase chain reaction (PCR). PCR products were analyzed using single stranded conformational polymorphism and phylogenetic analyses of the LSU DNA sequences from a subset of the samples. The results showed that Symbiodinium populations were generally uniform among and within the populations of eight coral species studied, and there are at least two clades of Symbiodinium from Kish and Larak islands. Clade D was detected from eight of the coral species while clade C was found in two of species only (one species hosted two clades simultaneously). The dominance of clade D might be explained by high temperatures or the extreme temperature variation, typical of the Persian Gulf. Publication of this article was held up owing to technical problems. The publisher apologizes sincerely for this lengthy delay.     

Biogeographic partitioning and host specialization among foraminiferan dinoflagellate symbionts (<Emphasis Type="Italic">Symbiodinium</Emphasis>; Dinophyta)

Large discoidal soritid foraminiferans (Soritinae) are abundant in coral reef ecosystems. As with the many cnidarian invertebrates that inhabit these systems, they also depend on symbiotic dinoflagellates (Symbiodinium) for their growth and survival. Several particular Symbiodinium sub-genera or clades inhabit these soritids. One of these groups, referred to as clade C, dominates corals and their relatives throughout the tropical Indo-Pacific. In contrast, the distributions of Symbiodinium spp. from clades A, B, and C are more evenly apportioned across Caribbean invertebrate communities. To explore the possibility that a similar biogeographic break exists in the symbionts harbored by soritids, we surveyed the Symbiodinium spp. from the soritid genus Sorites, collected from the Pacific and Caribbean coasts of Panama as well as from Florida. Characterization of Symbiodinium obtained from foraminiferal and cnidarian samples was conducted using restriction fragment length polymorphism and phylogenetic analyses of the nuclear internal transcribed spacer region 2 (ITS 2) and a portion of the large subunit ribosomal DNA sequences. A distinctive biogeographic break between the kinds of symbionts found in Sorites from the East Pacific and Caribbean was clearly evident. Differences between cnidarian and foraminferan symbioses in each ocean may be explained by the subjection of Caribbean communities to severer environmental conditions during the early Quarternary. Caribbean Sorites spp. harbored symbionts described from clade F (specifically sub-clade Fr4) and clade H (formally referred to as Fr1), while Sorites spp. from the eastern Pacific were dominated by a single Symbiodinium haplotype in clade C. An ITS 2 phylogeny determined that most clade C types recovered from Indo-Pacific soritids form a monophyletic sub-lineage with other clade C symbionts typically found in Pacific corals from the genus Porites. The existence of multiple Symbiodinium lineages at various taxonomic levels associated specifically with soritids indicates that symbioses with these hosts are important in driving Symbiodinium spp. evolution.Electronic Supplementary Material Supplementary material is available in the online version of this article at .Communicated by O. Kinne, Oldendorf/Luhe     

Inter-polyp genetic and physiological characterisation of <Emphasis Type="Italic">Symbiodinium</Emphasis> in an <Emphasis Type="Italic">Acropora valida</Emphasis> colony

Corals harbouring genetically mixed communities of endosymbiotic algae (Symbiodinium) often show distribution patterns in accordance with differences in light climate across an individual colony. However, the physiology of these genetically characterised communities is not well understood. Single stranded conformation polymorphism (SSCP) and real time quantitative polymerase chain reaction (qPCR) analyses were used to examine the genetic diversity of the Symbiodinium community in hospite across an individual colony of Acropora valida at the spatial scale of single polyps. The physiological characteristics of the polyps were examined prior to sampling with a combined O₂ microelectrode with a fibre-optic microprobe (combined sensor diameter 50–100 μm) enabling simultaneous measurements of O₂ concentration, gross photosynthesis rate and photosystem II (PSII) quantum yield at the coral surface as a function of increasing irradiances. Both sun- and shade-adapted polyps were found to harbour either Symbiodinium clade C types alone or clades A and C simultaneously. Polyps were grouped in two categories according to (1) their orientation towardps light, or (2) their symbiont community composition. Physiological differences were not detected between sun- and shade-adapted polyps, but O₂ concentration at 1,100 μmol photons m⁻² s⁻¹ was higher in polyps that harboured both clades A and C symbionts than in polyps that harboured clade C only. These results suggest that the acclimatisation of zooxanthellae of individual polyps of an A. valida colony to ambient light levels may not be the only determinant of the photosynthetic capacity of zooxanthellae. Here, we found that photosynthetic capacity is also likely to have a strong genetic basis and differs between genetically distinct Symbiodinium types.     

Cytochrome <Emphasis Type="Italic">b</Emphasis> (<Emphasis Type="Italic">Cyt-b</Emphasis>) gene sequence analysis in six flatfish species (Teleostei,Pleuronectidae), with phylogenetic and taxonomic insights

Mitochondrial DNA (mtDNA) at Cyt-b gene region was sequenced for six flatfish species (in total nine sequences of at least 1,117 bp) from the Far East of Russia and compared with other sequences of Pleuronectiformes comprising altogether 34 species and 3 outgroup species (Perciformes). Analysis of the protein-coding Cyt-b gene revealed a statistically substantiated bias in (T + C):(A + G) content, supporting earlier findings. Values of P-distances, as summarized for different scales of the evolutionary history at Cyt-b gene, revealed a clear pattern of increased nucleotide diversity at four different phylogenetic levels: (1) intraspecies, (2) intragenus, (3) intrafamily, and (4) intraorder. Scores of average P-distances of the four categories of comparison in flatfishes were (1) 0.46 ± 0.19%, (2) 11.74 ± 2.26%, (3) 17.51 ± 3.13%, and (4) 25.60 ± 0.42%, respectively (mean ± SE). These data support the concept that speciation in the order Pleuronectiformes, in most cases, follows a geographic mode through the accumulation of numerous small genetic changes over a long period of time. A phylogenetic tree for 64 sequences of flatfishes and 3 other fishes belonging to ray-finned fishes (Actinopterigii) was developed using Cyt-b gene and four different analytical approaches: neighbour-joining (NJ), Bayesian (BA), maximum parsimony (MP), and maximum likelihood (ML). The analysis revealed a monophyletic origin for the representatives of Pleuronectidae, which is the principal flatfish family investigated (99% repetition level in our BA analysis). A well supported property of the phylogenetic tree was the monophyletic placement of all the five flatfish families and the order Pleuronectiformes among other representatives of ray-finned fishes of the class Actinopterigii. Species identification on per individual basis (barcoding tagging) was generally high. However, there were taxonomic complications that arose during analysis, and they are discussed. Major outcomes of this discussion are the necessity of synonymy acceptance for Hippoglossoides elassodon, and H. robustus, and for Pseudopleuronectes yokohamae and P. schrenki. Priority considerations suggest H. elassodon and P. yokohamae as valid species names.     

Lack of sequestration of host plant glucosinolates in <Emphasis Type="Italic">Pieris rapae</Emphasis> and <Emphasis Type="Italic">P. grarricae</Emphasis>

Summary. Sequestration of plant toxins in herbivores is often correlated with aposematic coloration and gregarious behaviour. Larvae of Pieris brassicae show these conspicuous morphological and behavioural characteristics and were thus suggested to sequester glucosinolates that are characteristic secondary metabolites of their host plants. P. rapaeare camouflaged and solitary, and are thus not expected to sequester. To test this hypothesis and to check the repeatabi-lity of a study that did report the presence of the glucosinolate sinigrin in P. brassicae, larvae were reared on three species of Brassicaceae (Sinapis alba, Brassica nigra and Barbarea stricta), and different leaf and insect samples were taken for glucosinolate analysis. The major host plant glucosinolates could only be found in traces or not at all in larval haemolymph, bled or starved larvae, faeces or pupae of both species or P. brassicae regurgitant. Haemolymph of both Pieris spp. was not rejected by the ant Myrmica rubra in dual-choice assays; the regurgitant of P. brassicae was rejected. This suggests the presence of compounds other than glucosinolates that might be sequestered in or produced by P. brassicae only. In faeces of both Pieris spp. a compound which yielded 4-hydroxybenzylcyanide (HBC) upon incubation with sulfatase was detected in high concentrations when larvae had been reared on S. alba. This compound may be derived from hydrolysis of sinalbin, the main glucosinolate of that plant. The unidentified HBC progenitor was apparently not sequestered in the two Pieris spp., and was not detected in faeces of larvae reared on B. nigra or B. stricta. Received 18 July 2002; accepted 11 September 2002.     

Thraustochytrids as novel parasitic protists of marine free-living flatworms: <Emphasis Type="Italic">Thraustochytrium caudivorum</Emphasis> sp. nov. parasitizes <Emphasis Type="Italic">Macrostomum lignano</Emphasis>

The Labyrinthulomycota are a relatively poorly studied group of heterotrophic unicellular eukaryotes. They comprise three lineages, labyrinthulids, thraustochytrids, and aplanochytrids, which are all primarily marine organisms and considered to be important components of marine microbial communities. Recently a number of Labyrinthulomycota have been implicated as parasites of marine (but also terrestrial) plants and marine molluscs. Here we describe a new species of thraustochytrid, Thraustochytrium caudivorum sp. nov. that we have isolated from laboratory cultures of Macrostomum lignano (Rhabditophora, Macrostomorpha), a marine free-living flatworm. In these worms T. caudivorum can cause lesions, which start at the tip of the tail plate and which can lead to the dissolution of the posterior part of the animal. Although the worms can frequently cure these lesions and regenerate the lost parts, the lesions can also result in the complete dissolution of the animal. We describe this thraustochytrid based on pure agar cultures and infestations in the worm cultures. Moreover, we describe its pathological effects on the worms and its morphology using both light and electron microscopy. In addition, we report a phylogenetic analysis using a partial 18S rDNA sequence that allows us to place this new species within the thraustochytrids. Finally, we outline a protocol that allows to permanently remove the parasites from infested worm cultures. We conclude that thraustochytrids represent a novel group of parasites of free-living flatworms. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Monitoring acoustically tagged king prawns <Emphasis Type="Italic">Penaeus</Emphasis> (<Emphasis Type="Italic">Melicertus</Emphasis>) <Emphasis Type="Italic">plebejus</Emphasis> in an estuarine lagoon

Fine-scale movement patterns in penaeid prawns are rarely observed in situ, but are essential in understanding habitat use, foraging, and anti-predator behaviour. Acoustic telemetry was applied to examine the activity, space utilization, and habitat use of the eastern king prawn Penaeus (Melicertus) plebejus, at small temporal and spatial scales. Tracking of sub-adult P. plebejus (n = 9) in Wallagoot Lake (36.789°S, 149.959°E; 23 April–12 May 2009) and calculation of a minimum activity index (MAI) revealed high variation in activity rates across diel periods and in different habitats. Elevated activity rates and movement indicated foraging in unvegetated habitats during the night. Areas within the 95 and 50% space utilization contours averaged 2,654.1 ± 502.0 and 379.9 ± 103.9 m², respectively, and there was a significant negative relationship between these areas and prawn activity rates in unvegetated habitats. This study provides the first estimates of prawn activity rates and space utilization in the field. Application of acoustic telemetry can increase knowledge of prawn movements and their interactions with other marine species in different habitats.     

Cloning and expression of a tauropine dehydrogenase from the marine sponge <Emphasis Type="Italic">Suberites </Emphasis><Emphasis Type="Italic">domuncula</Emphasis>

The cDNA sequence coding for tauropine dehydrogenase (TaDH) [belonging to the family of opine dehydrogenases] has been determined. Using the demosponge Suberites domuncula, we describe for the first time the tauropine dehydrogenase gene (of length 2,992 kb) from a eukaryote, consisting of two introns flanked by three exons. Moreover, two allelic variants have been identified, which are present in the different specimens either in a homozygotic or in a heterozygotic way; the data suggest an intermediary type of heritance. Phylogenetic analyses indicate that S. domuncula TaDH is only distantly related to the opine dehydrogenases from marine invertebrates; rather it comprises high sequence similarity to bacterial ornithine cyclodeaminases (OCD). In addition, expression studies revealed that the steady-state level of TaDH dropped drastically in animals, which had been exposed to elevated aeration. Antibodies raised against the recombinant sponge TaDH were used to demonstrate that S. domuncula expresses high levels of this enzyme in almost all cells. If tissue samples were kept under additional aeration no immuno-signals could be identified. A strong accumulation of the enzyme was seen around the bacteria, existing in bacteriocytes, indicating that under aerobic conditions the bacteria might produce taurine. These data suggest involvement of the sponge TaDH in the final step of the glycolytic pathway, more specifically, in regeneration of NAD(+) under anaerobic conditions. Furthermore, potential mutual influences between bacteria and sponge are discussed, claiming a horizontal gene transfer of the gene from a bacterium to the sponge. The following sequences from Suberites domuncula have been deposited (EMBL/GenBank): the cDNA encoding the tauropine [(carboxyethyl)-taurine/derived from sulfhydryl-amino acids] dehydrogenase (SD_TaDH) under AM712888; the corresponding gene under AM712889; and the fragments of the sponge-associated bacteria comprising the opine dehydrogenase domain: SUBDO_BAC1 (AM712890), SUBDO_BAC2 (AM712891), SUBDO_BAC3 (AM712892), SUBDO_BAC5 (AM712894), SUBDO_BAC6 (AM712895), SUBDO_BAC7 (AM712896), SUBDO_BAC8 (AM712897) and SUBDO_BAC9 (AM712898).     

Phylogeographic structure of <Emphasis Type="Italic">Octopus vulgaris</Emphasis> in South Africa revisited: identification of a second lineage near Durban harbour

In a previous study that investigated genetic structure of Octopus vulgaris along the South African coast by sequencing the mitochondrial cytochrome oxidase III gene (COIII), all sequences generated were identical. Such a finding is unusual, because mitochondrial DNA mutates quickly, and several marine invertebrates present in southern Africa show considerable genetic variation and structure. We reanalysed the samples using two different mitochondrial markers, namely cytochrome oxidase I (COI) and the large ribosomal subunit (16S rRNA). Sequences of both these markers showed variation. The conclusion of the previous study, that South Africa’s O. vulgaris population is characterised by a lack of genetic structure along the coast, is rejected. Some specimens from Durban (southeast Africa) were genetically more different from those found in the remainder of the country than were specimens from other regions (Tristan da Cunha and Senegal). We suggest that the lineage in Durban may have been recently introduced.     

Cryopreservation of the dinoflagellate symbiont of the octocoral <Emphasis Type="Italic">Pseudopterogorgia elisabethae</Emphasis>

In this paper we describe a cryopreservation protocol followed by the culture of Symbiodinium sp. isolated from the Caribbean gorgonian Pseudopterogorgia elisabethae as a potential renewable source of the dinoflagellate symbiont. Four different freezing protocols were designed: a controlled cooling device designed to cool at 1°C/min, a three-step protocol (−20°C for 2 h, −70°C for 2 h, liquid nitrogen-LN₂), a two-step protocol (−70°C for 2 h, LN₂), and a one-step protocol (LN₂). All cells were stored in LN₂ after cryopreservation. The cryoprotective agents (CPA) used were ethanol (EtOH) and methanol (MeOH) at 10 and 20%, and seawater (FSW) was used as a control. Viability measurements using cell counts showed that all cryopreservation protocols were relatively successful, and no trends were observed regarding freezing protocol or CPA used. After 19 weeks in culture the viability of samples which had high biomass was determined by the fluorescent assay CellTiter Blue™. The most viable cultures were those cryopreserved by a two-step protocol using 20% MeOH or 20% EtOH as a CPA. A genetic examination of the DNA of these samples using Symbiodinium-specific PCR primers confirmed that the composition of the culture had not changed. For the first time, we report that Symbiodinium sp. isolated from a gorgonian can be cryopreserved and subsequently cultured successfully. Lory Z. Santiago-Vázquez and Nealie C. Newberger contributed equally to this publication.     

Degree-day accumulation controlling allopatric and sympatric variations in the sociality of sweat bees, <Emphasis Type="Italic">Lasioglossum</Emphasis> (<Emphasis Type="Italic">Evylaeus</Emphasis>) <Emphasis Type="Italic">baleicum</Emphasis> (Hymenoptera: Halictidae)

Halictine bees exhibit a wide range of social behaviour that varies both inter- and intraspecifically. Although previous studies suggested that the intraspecific variation might be attributed to temperature differences, there was no direct evidence to detect the relationships between temperature and socialities. Lasioglossum (Evylaeus) baleicum exhibited solitary behaviour in a cooler locality (Kawakita) because of the shorter breeding season; in a warmer locality (Nishioka Park), however, this bee species exhibited eusociality at sunny site and solitary behaviour at shady site, whereas a molecular phylogeny confirms that all of these colonies are evidently conspecific. Therefore, we examined the effect of degree-day accumulation on the sympatric social variation of L. baleicum by rearing the bees to calculate the threshold temperature. Whereas they showed high mortality, the threshold temperature was estimated to be 10.33°C and the expected degree-day accumulation was 340 degree days. When we use this value of a degree-day accumulation to estimate the expected eclosion date, the estimated dates were always consistent with observed eclosion dates. In any sites where the bees were solitary, the degree-day accumulation was not enough for the second eclosion by the end of the bee-active season. In Nishioka Park, sex ratio of the first brood was female biased, and daughters were smaller than mothers; in Kawakita, however, there was no sex bias, and daughters were as large as their mothers indicating that the foundresses seem to produce gyne-sized females in Kawakita but worker-sized females in Nishioka though these females do not become workers at shady site.     

Molecular phylogeny of the American <Emphasis Type="Italic">Callinectes</Emphasis> Stimpson, 1860 (Brachyura: Portunidae), based on two partial mitochondrial genes

The genus Callinectes encompasses 16 species of commercially important swimming crabs. Most (13) occur on the Pacific and Atlantic coasts of the Americas. We compare mtDNA regions corresponding to 964 basepairs of the large (16S) and small (12S) ribosomal subunits among American Callinectes in order to examine phylogenetic relationships. The status of Callinectes affinis Fausto-Filho and Callinectes maracaiboensis Taissoun is questioned, and C. maracaiboensis is concluded to be a junior synonym of Callinectes bocourti A. Milne-Edwards, from which it cannot be consistently distinguished. We find two major lineages, one of which includes C. affinis, C. bocourti, Callinectes rathbunae Contreras, Callinectes sapidus Rathbun, and Callinectes toxotes Ordway. A second lineage is comprised of Callinectes arcuatus Ordway, Callinectes bellicosus (Stimpson), Callinectes danae Smith, Callinectes exasperatus (Gerstaecker), Callinectes larvatus Ordway, Callinectes ornatus Ordway, and Callinectes similis Williams. Definition of these clades is supported by previously described morphological differences in the length of the gonopods and shared physioecological adaptations. A calibrated molecular clock is used to estimate divergence of the two lineages near 13 mybp. Our analyses suggest that C. ornatus is the closest relative of C. arcuatus, and that C. affinis is closest to C. bocourti.     

Feeding aggregations of sea stars (<Emphasis Type="Italic">Asterias</Emphasis> spp. and <Emphasis Type="Italic">Henricia sanguinolenta</Emphasis>) associated with sea urchin (<Emphasis Type="Italic">Strongylocentrotus droebachiensis</Emphasis>) grazing fronts in Nova Scotia

Migrating feeding aggregations (or fronts) of sea urchins can dramatically alter subtidal seascapes by destructively grazing macrophytes. While direct effects of urchin fronts on macrophytes (particularly kelps) are well documented, indirect effects on associated fauna are largely unknown. Secondary aggregations of predators and scavengers form around fronts of Strongylocentrotus droebachiensis in Nova Scotia. We recorded mean densities of the sea stars Asterias spp. (mainly A. rubens) and Henricia sanguinolenta of up to 11.6 and 1.7 individuals 0.25 m⁻² along an urchin front over 1 year. For Asterias, mean density at the front was 7 and 15 times greater than in the kelp bed and adjacent barrens, respectively. There was strong concordance between locations of peak density of urchins and sea stars (Asterias r = 0.98; H. sanguinolenta r = 0.97) along transects across the kelp–barrens interface, indicating that sea star aggregations migrated along with the urchin front at rates of up to 2.5 m per month. Size–frequency distributions suggest that Asterias at the front were drawn from both the barrens (smaller individuals) and the kelp bed (larger individuals). These sea stars fed intensively on mussels on kelp holdfasts and in adjacent patches. Urchin grazing may precipitate aggregations of sea stars and other predators or scavengers by incidentally consuming or damaging mussels and other small invertebrates, and thereby releasing a strong odor cue. Consumption of protective holdfasts and turf algae by urchins could facilitate feeding by these consumers, which may obtain a substantial energy subsidy during destructive grazing events.     

Spatial variability in reproductive cycle of the gorgonians <Emphasis Type="Italic">Paramuricea clavata</Emphasis> and <Emphasis Type="Italic">Eunicella singularis</Emphasis> (Anthozoa,Octocorallia) in the Western Mediterranean Sea

Paramuricea clavata (Risso, 1826) and Eunicella singularis (Esper, 1794) are the most representative gorgonian species in hard bottoms sublittoral communities in the Western Mediterranean Sea. Reproductive cycles of two populations of both species were studied in two distinct locations approximately 600 km apart (Medes Islands and Cape of Palos), in order to assess interpopulation variability on a relevant geographic scale. Seasonal variation of lipid concentration levels in the gorgonian tissue was used as a tool to quantify energy storage by each studied population in order to explain possible interpopulation differences in gonadal output. Sex ratio in Medes Islands populations of both species was 1:1, while in Cape of Palos sex ratio was significantly male biased (1:7) in P. clavata, and female biased (1.7:1) in E. singularis populations. Spawning timing occurred in all cases coinciding with a marked increase in sea-water temperature in spring, and after the most successful feeding season, but comparing localities there was a clear temporal shift in the time of gametes release, appearing well linked to the shift in sea-water temperature rising in spring in both sites at the depth where populations are placed. Therefore, in this study the temperature appears as the main synchronizing factor of gonadal development within these populations. Significant differences in gonadal volume per polyp were found in both species owing mainly to differences in the number of gonads per polyp between populations, with Cape of Palos populations displaying higher values in both studied species, suggesting that the exposition to different local conditions may be reverted in a different gonadal output. But the observed patterns in lipid concentrations levels in gorgonians disable us to conclude that lipid concentration levels explain the observed differences in gonadal output found in this study.     

Phylogenetic analyses of potentially free-living <Emphasis Type="Italic">Symbiodinium</Emphasis> spp. isolated from coral reef sand in Okinawa,Japan

The existence of “free-living” Symbiodinium that can form symbioses with hosts is implied by the presence of hosts that produce Symbiodinium-free gametes and expulsion and/or expelled symbiotic algae from host. However, it is still unclear if potentially symbiotic Symbiodinium are found “free-living” in the coral reef environment. Sixteen Symbiodinium strains were established from samples taken from three sampling locations of coral reef sand in Okinawa, Japan. Phylogenetic analyses of the partial large subunit ribosomal DNA (28S-rDNA) and the internal transcribed spacer of ribosomal DNA (ITS-rDNA) conclusively showed that all 16 isolates belonged to Symbiodinium clade A sensu Rowan and Powers (1991). The lack of other Symbiodinium clades besides clade A in this study may be due to other clades not being readily culturable under culture conditions used here. The new isolates could be phylogenetically divided into four groups, though no sequences were identical to previously reported Symbiodinium. Two of the four groups were closely related to symbiotic Symbiodinium clade A isolated from a variety of host species. One isolate group formed a highly supported monophyly with Symbiodinium types that have previously been characterized as “free-living”. The remaining isolate group, although within clade A, was quite divergent from other clade A Symbiodinium. These results indicate that novel diversity of free-living Symbiodinium exists in coral sand.     

Functional morphology and phylogeny of the rock-boring bivalves <Emphasis Type="Italic">Leiosolenus</Emphasis> and <Emphasis Type="Italic">Lithophaga</Emphasis> (Bivalvia: Mytilidae): a third functional clade

The functional morphology of the shell of rock-boring mytilids (especially Leiosolenus and Lithophaga) is analyzed and compared with that of several epifaunal and semi-infaunal mytilids. Semi-infaunal species are generally intermediate between epifaunal and rock-boring ones both in terms of shell form and the magnitude of forces pulling the shells against the substratum. A molecular phylogenetic analyses using 18s rDNA sequence data strongly suggests that Leiosolenus and Lithophaga are monophyletic genera but that the so-called Lithophaginae (or Leiosolenus plus Lithophaga) is a paraphyletic group. The common cylindrical shell form of rock-boring species, which is here called “lithophagiform” as a third functional mytilid clade, may be due to convergence, as is the case with ‘mytiliform’ and ‘modioliform’.     

Evolutionary relationships of Southern Ocean Octopodidae (Cephalopoda: Octopoda) and a new diagnosis of <Emphasis Type="Italic">Pareledone</Emphasis>

The phylogenetic relationships of eight species of incirrate octopodid from western Antarctica were investigated using molecular sequence data from the mitochondrial 16s ribosomal RNA gene. The genus Pareledone, which is endemic to the Antarctic, was found to be polyphyletic. On the basis of this and previous morphological studies, it is suggested that species that are morphologically similar to Pareledone polymorpha should be removed from the genus. This simplifies the diagnosis of Pareledone: a new diagnosis is given. The subfamilies Eledoninae and Graneledoninae were also found to be polyphyletic. The applicability of using the presence of an ink sac as a taxonomic character to define the subfamilies is discussed. Loss of an ink sac is almost certainly an adaptation to depth and use of this character has produced an artificial classification with no evolutionary significance. As the other two subfamilies, Octopodinae and Bathypolypodinae, are also separated by this character, it is probable that all the subfamilies of the Octopodidae are polyphyletic. The use of subfamilies should therefore be discontinued until our understanding of the evolution of the family Octopodidae increases.     

Genealogical relationships within and among shallow-water <Emphasis Type="Italic">Ciona</Emphasis> species (Ascidiacea)

In spite of historical and current interest in Ciona intestinalis and its congeners, little is known about evolutionary relationships among the members of the genus Ciona. Here 744-bp sequences of the mitochondrial cytochrome c oxidase subunit I (COI) gene are used to examine phylogenetic relationships among three described species (C. intestinalis, C. roulei, C. savignyi) sampled from multiple coastal sites in the Northeast Pacific (CA, USA), Northwest Atlantic (from New Hampshire to Connecticut, USA), Northeast Atlantic (Sweden and The Netherlands), and Mediterranean (Banyuls-sur-Mer, France). The samples were collected in June–October 2005. The COI sequences of Northeast Pacific/Mediterranean (Type A) and Northwest Atlantic (Type B) C. intestinalis differ by ∼12% and C. roulei is nested within Type B C. intestinalis. Ciona savignyi differs from all other haplotypes by 13–16%. A previously undescribed but morphologically distinct Ciona sp. found at the Banyuls-sur-Mer site was >10% divergent from all other haplotypes. Although these data arise from a single gene study, they indicate that further elucidation of species relationships within the genus and of the species’ distributions will be needed if continuing invasions and potential reproductive isolation are to be investigated.