The areal extent of brown shrimp habitat suitability in Mobile Bay, Alabama, USA: targeting vegetated habitat restoration

The availability of wetlands and shallow water habitats significantly influences Gulf of Mexico (GOM) penaeid shrimp fishery productivity. However, the GOM region has the highest rate of wetland loss in the USA. Protection and management of these vital GOM habitats are critical to sustainable shrimp fisheries. Brown shrimp (Farfantepenaeus aztecus) are a major component of GOM fisheries. We present an approach for estimating the areal extent of suitable habitat for post-larval and juvenile brown shrimp in Mobile Bay, Alabama, using an existing habitat suitability index model for the northern GOM calculated from probabilistic survey of water quality and sediment data, land cover data, and submerged aquatic vegetation coverages. This estuarine scale approach is intended to support targeted protection and restoration of these habitats. These analyses indicate that approximately 60% of the area of Mobile Bay is categorized as suitable to near optimal for post-larval and juvenile shrimp and 38% of the area is marginally to minimally suitable. We identify potential units within Mobile Bay for targeted restoration to improve habitat suitability.     

The potential and limitations of linking biological monitoring data and restoration needs of urbanized waterways: a case study

The implementation of effective strategies to mitigate the impacts of urbanization on waterways represents a major global challenge. Monitoring data plays an important role in the formulation of these strategies. Using monitoring and historical data compiled from around an urban area (Baltimore, USA), this paper is an assessment of the potential and limitations of the use of fish assemblage monitoring data in watershed restoration. A discriminant analysis between assemblages from urban and reference sites was used to determine faunal components which have been reduced or eliminated from Baltimore area waterways. This analysis produced a strong discrimination between fish assemblages from urban and reference sites. Species primarily associated with reference sites varied taxonomically and ecologically, were generally classified as pollution intolerant, and were native. Species associated with urbanized sites were also native, varied taxonomically and ecologically, and were mixed in pollution tolerance. One factor linking most species associated with reference sites was spawning mode (lithophilic). Spawning habitat limitations may be the mechanism through which these species have been reduced in the urbanized faunas. While this presents a strong general hypothesis, information regarding the specific habitat requirements and responses to urbanization of these species is limited. This represents a limitation to producing effective restoration strategies based on exact goals and targets. Without these, determining the type and number of restoration activities required to restore ecological communities remains problematic.     

Probabilistic risk assessment and risk mapping of metals in tropical estuarine sediments using the 1 quarisk model

Total sediment concentrations of Cd, Cu, Pb, Zn, As, and Hg obtained from the Ankobra, Sakumo II, and Volta estuaries in Ghana were used to generate contaminant probability density distributions and species sensitivity distributions in AQUARISK. Results of the tier 1 assessment showed Cu, Cd, Zn, and Pb were not of concern in the Ankobra as their measured values and the 99th percentile of the fitted distributions were lower than the SQG low-trigger values. Mercury (Hg) and As were however, identified to be of concern in this estuary. In the Sakumo II estuary, Cu, Cd, Pb, and Hg have been identified to be of concern because their concentrations are higher than the SQG low-trigger values. Hg has been identified as the only metal of concern in the Volta estuary. The total proportion of species likely to be affected by the combined concentration of Cd, Cu, and Zn measured from Ankobra, Sakumo II, and Volta were 14%, 16%, and 12%, respectively, according to the Bur III distributional analysis of the ecotoxicology data. The measured median sediment concentrations of As and Hg in the Ankobra estuary greatly exceeded the median sediment concentration targets to achieve a 5% or less exceedence of the SQG low value. Similarly, in the Sakumo II estuary, the measured median sediment concentrations of Cu, Pb, and Hg greatly exceeded the median sediment concentration targets to achieve a 5% or less exceedence of the SQG low. For the Volta estuary however, other metals except Hg fall below the target values.     

Assessing changes in the Presque Isle Bay watershed fish community using a modified index of biotic integrity: before and after the elimination of combined sewer overflows

An index of biotic integrity and species richness were used to assess changes in the Presque Isle Bay watershed fish community before and after the elimination of combined sewer overflows (CSOs). The fish community was sampled with a backpack electrofisher in 2011 at 12 stream locations on 4 tributaries of Presque Isle Bay, Erie County, Pennsylvania. All sites were previously sampled in 2001. Significant increases in species richness and index of biotic integrity (IBI) scores were observed in 2011 compared to 2001. The significant increases in species richness and IBI scores occurred following the elimination of 10 CSOs to Garrison Run, 7 CSOs to Cascade Creek, and 37 CSOs to Mill Creek. Despite the increased richness and IBI scores, the fish community remains in poor condition, which may be related to the highly urbanized land use of the watershed. Urban land uses comprise 77 % of the Presque Isle Bay watershed, and in both 2011 and 2001, the watershed as a whole did not meet warm-water habitat criteria. It is unlikely that the fish community will continue to recover without addressing urbanization throughout the watershed.     

When are historical data sufficient for making watershed-level stream fish management and conservation decisions?

Addressing landscape-level threats to stream fishes such as habitat and hydrological alterations requires adequate watershed-level species inventories. Where watershed-level ichthyofaunal surveys are prohibitively expensive, existing (historical) data sources may provide an option for compiling species lists. However, it is critical that managers consider potential biases or limitations of species lists compiled from existing data. Here we assess the suitability of species lists compiled from existing data sources for making watershed-level fish management and conservation decisions. For nine Great Lakes watersheds, we developed existing species lists by compiling all available federal and state agency and museum fish survey data. We then compared the size and species composition of existing species lists to current species lists compiled from intensive field surveys, conducted in 2002, of the same watersheds. Species lists compiled from commonly available existing data sources, such as state and federal agency and museum data, missed many species detected during our 2002 field surveys. In most watersheds, more than 10 species were missed (range 5–21) on existing lists. Sampling over multiple years and seasons increased the size of both current (field) and existing species lists. Existing species lists compiled from surveys conducted over multiple years and seasons included an average of 15 species not captured during the 2002 field surveys. However, such multiyear existing datasets are rare and not available for many watersheds. In addition, species lists compiled from older existing surveys (e.g., before 1984) did not accurately represent current species composition of the watersheds and our results indicate several apparent misidentifications or errors on these lists. Lastly, while most game species were detected on existing lists, migratory species and recently introduced species were commonly missed on these lists. We conclude with recommendations for using existing data for watershed-level stream fish management and conservation decisions.     

Fish abundances in shoreline habitats and submerged aquatic vegetation in a tidal freshwater embayment of the Potomac River

Submerged aquatic vegetation (SAV) is considered an important habitat for juvenile and small forage fish species, but many long-term recruitment surveys do not effectively monitor fish communities in SAV. To better understand the impact of recent large increases of SAV on the fish community in tidal freshwater reaches of the Potomac River, we compared traditional seine sampling from shore with drop ring sampling of SAV beds (primarily Hydrilla) in a shallow water (depths, <1.5 m) embayment, Gunston Cove. To accomplish this, we developed species-specific catch efficiency values for the seine gear and calculated area-based density in both shoreline and SAV habitats in late summer of three different years (2007, 2008, and 2009). For the dominant species (Fundulus diaphanus, Lepomis macrochirus, Etheostoma olmstedi, Morone americana, Lepomis gibbosus, and Fundulus heteroclitus), density was nearly always higher in SAV, but overall, species richness was highest in shoreline habitats sampled with seines. Although historical monitoring of fish in Gunston Cove (and throughout Chesapeake Bay) is based upon seine sampling (and trawl sampling in deeper areas), the high densities of fish and larger areal extent of SAV indicated that complementary sampling of SAV habitats would produce more accurate trends in abundances of common species. Because drop ring samples cover much less area than seines and may miss rare species, a combination of methods that includes seine sampling is needed for biodiversity assessment. The resurgence of SAV in tidal freshwater signifies improving water quality, and methods we evaluated here support improved inferences about population trends and fish community structure as indicators of ecosystem condition.     

Habitat Conditions and Correlations of Sediment Quality Triad Indicators in Delaware Bay

This paper summarizes sampling results from NOAA's National Status and Trends (NS&T) Program for marine environmental quality in Delaware Bay. A stratified-random design was used to determine the spatial extent of sediment contamination and toxicity in Delaware Bay from offshore stations in the coastal zone, the lower estuary, the upper estuary, the fresh/salt mixing zone, and tidal fresh areas. Sediment samples were taken for chemical analyses of major classes of environmental contaminants, a suite of toxicity bioassays, and benthic macrofaunal community assessment to identify patterns of resident species. The tidal-fresh areas and portions of the mixing zone of the study area were heavily contaminated. Contaminant concentrations were frequently above the 90th percentile of EMAP Virginian Province levels. PAHs in the sediment were higher than previously documented, with a major component of PAHs being pyrogenic in origin. Bioassay results were highly variable. Toxicity and contaminant levels were correlated when aggregated into indices, but were only marginally correlated with benthic community impacts. High and low abundance stations were found in all zones. Most of the tidal fresh stations were dominated by pollution tolerant species. Species diversity and abundance were generally lowest in the fresh/salt mixing zone.     

Cadmium,zinc and total mercury levels in the tissues of several fish species from La Plata river estuary,Argentina

A survey of the concentrations of heavy metals — cadmium, zinc and total mercury — in the tissues of fifteen fish species from Samborombón Bay, La Plata river estuary, in Argentina, has been carried out. Liver appeared to be the main organ accumulating cadmium and zinc, while both liver and muscle showed a similar ability for accumulating mercury. The bioaccumulation process was verified for the three metals analyzed, even though low concentrations have been determined. The biomagnification process of the metals studied was not verified in this environment. The highest metal concentrations were recorded in Mugil liza, and particulate matter and sediments — which are closely related to its trophic and ecological habits — seemed to be the main source of metals for this species. Both Micropogonias furnieri and Mugil liza were recognized as possible indicator species for future monitoring programmes for heavy metals in Samborombón Bay. Considering the present results, this area of La Plata river estuary is characterized as a non-polluted environment.Scientific Researcher from the National Council for Scientific and Technological Researches (CONICET), of Argentina     

Variations in seasonal phytoplankton assemblages as a response to environmental changes in the surface waters of a hypo saline coastal station along the Bhagirathi�CHooghly estuary

Due to the close proximity of the Bay of Bengal and the freshwater inflow of Bhagirathi-Hooghly, Diamond Harbour appeared as an important coastal station of the Bhagirathi-Hooghly estuary. The spatial and temporal composition and abundance of microphytoplankton species was examined in relation to physical and chemical surface water variables (i.e., salinity, nutrient, and temperature).The primary objective of the study was to observe the variations in phytoplankton species assemblages as a response to environmental variables. Hierarchical cluster analysis and non-metric multidimensional scaling were used to find out distinct seasonal groups based on the composition of phytoplankton. The results indicate that several key environmental factors like temperature, DIN content, and molar ratio of nutrients like DIN-DIP and DIN-DSi influenced seasonal phytoplankton assemblages within the estuary. The distribution of phytoplankton population showed two main groups where the blue-green and green algal populations favored the warmer conditions of summer and monsoon months, whereas the diatom population primarily flourished in the cooler months of autumn and winter.     

Assessing the wildlife habitat value of New England salt marshes: II. Model testing and validation

We tested a previously described model to assess the wildlife habitat value of New England salt marshes by comparing modeled habitat values and scores with bird abundance and species richness at sixteen salt marshes in Narragansett Bay, Rhode Island USA. As a group, wildlife habitat value assessment scores for the marshes ranged from 307-509, or 31-67% of the maximum attainable score. We recorded 6 species of wading birds (Ardeidae; herons, egrets, and bitterns) at the sites during biweekly survey. Species richness (r (2)=0.24, F=4.53, p=0.05) and abundance (r (2)=0.26, F=5.00, p=0.04) of wading birds significantly increased with increasing assessment score. We optimized our assessment model for wading birds by using Akaike information criteria (AIC) to compare a series of models comprised of specific components and categories of our model that best reflect their habitat use. The model incorporating pre-classification, wading bird habitat categories, and natural land surrounding the sites was substantially supported by AIC analysis as the best model. The abundance of wading birds significantly increased with increasing assessment scores generated with the optimized model (r (2)=0.48, F=12.5, p=0.003), demonstrating that optimizing models can be helpful in improving the accuracy of the assessment for a given species or species assemblage. In addition to validating the assessment model, our results show that in spite of their urban setting our study marshes provide substantial wildlife habitat value. This suggests that even small wetlands in highly urbanized coastal settings can provide important wildlife habitat value if key habitat attributes (e.g., natural buffers, habitat heterogeneity) are present.     

Integrated estuary management for diffused sediment pollution in Dapeng Bay and neighboring rivers (Taiwan)

This work investigated sediment samples collected from Dapeng Bay and three neighboring rivers (Kaoping River, Tungkang River, and Lingbeng River) in southwestern Taiwan, Republic of China. Multivariate statistical analysis techniques, i.e., factor analysis, cluster analysis, and canonical discriminant analysis were used for the evaluation of spatial variations to determine the types of pollution and to identify pollutant sources from neighboring rivers. Factor analysis results showed that the most important latent factors in Dapeng Bay are soil texture, heavy metals, organic matter, and nutrients factors. Contour maps incorporating the factor scores showed heavy metals accumulate along the lakesides, especially on the southeastern banks of the lakes. A cluster analysis was performed using factor scores computed from these latent factors. We then classified these areas into five distinct classes using sampling stations, and we illustrate that in the three river classes, the sediment properties are influenced by industrial and domestic wastewater and agricultural activities (including livestock rearing and farm activities). However, in Dapeng Bay, the rivers were influenced more by complicated biogeochemical processes; these could be identified as a type of pollution. Canonical discriminant analysis illustrated that two constructed discriminant functions made a marked contribution to most of the discriminant variables, and the significant parameters of porosity and Cd, Cr, Al, and Pb content were combined as the ??heavy metal factor??. The recognition capacities of the two discriminant functions were 82.6% and 17.4%, respectively. It is also likely that the annual mean of the water exchange rate is insufficient (taking about 7 days to eliminate pollutants) and therefore has significantly influenced the carbon and nutrient biogeochemical processes and budgets in the semi-enclosed ecosystem. Thus, the sediment properties are not similar between the lagoon and the neighboring rivers. Our results yield useful information concerning estuary recovery and water resources management and may be applicable to other basins with similar characteristics that are experiencing similar coastal environmental issues.     

Baseline survey of concentrations of toxaphene congeners in fish from European waters

The European Union project "Investigation into the monitoring, analysis and toxicity of toxaphene"(MATT) began in 1997 involving participants from the Netherlands, Ireland, Norway and Germany. Concentration information, analytical methodology and statistical interpretation of 207 samples covering 23 different fish species from European waters are presented for three toxaphene indicator congeners: CHBs 26, 50 and 62 (CHB = chlorobornane). Concentrations for the Sigma3CHBs were more elevated in fish from more northern latitudes, such as the Barents and Norwegian Sea, compared to fish from Irish, Dutch and German waters. Concentrations were lowest in shellfish and in fish species having low lipid content and were highest in medium/high lipid species. Females from a number of fish species were shown to contain significantly higher concentrations than those observed in male fish. Overall no samples were shown to exceed existing German MRL legislation, with only one Greenland halibut sample shown to exceed Canadian TDI recommendations.     

Contaminant Profiles of Two Species of Shorebirds Foraging Together at Two Neighboring Sites in South San Francisco Bay, California

The San Francisco Bay estuary isused by over one million shorebirds during springmigration and is home to several hundred thousandduring the winter. Most shorebird use occurs in thesouthern reach of the estuary (South Bay). Thereduced water circulation and discharge fromindustrial sources in the South Bay are responsiblefor the highest levels of some trace elements in theestuary. Wintering shorebirds have been found to havestrong site fidelity to areas as small as a fewkilometers in the South Bay, which may increase theirexposure to contaminants near local point sources. Inaddition, different shorebird species foraging at thesame site have been shown to have differentcontaminant burdens. Thus, our objectives were totest whether contaminant burdens differed by species,or whether contaminant burdens differed in shorebirdscollected at adjacent sites. We examined thecontaminant profiles of two species of shorebirds,long-billed dowitchers (Limnodromus scolopaceus)and western sandpipers (Calidris mauri) thatforage together at two sites, Hayward and Newark,separated by 8 km in the South Bay. We usedmultivariate analysis of variance tests to compare thecomposition of 14 elemental analytes in their livertissues and estimated their molar ratios of Hg and Se. Composite samples were used for contaminant analysesbecause of the small body size of the shorebirds. Seven elemental analytes (Ag, Ba, Be, Cr, Ni, Pb, V)were below detection limits in a majority of thesamples so statistical analyses were precluded. Inthe measurable analytes (As, Cd, Cu, Hg, Mn, Se, Zn),we found no significant intra-site differences ofcontaminant profiles for the two species. We pooledthe samples to examine inter-site differences andfound significant differences in contaminant profilesbetween shorebirds at the neighboring sites (P = 0.03). Shorebirds at Newark had higher (P < 0.05) concentrations of As, Cd, and Se than those at Hayward. Dowitchers at Newark had concentrations of Hg and Se which were highly correlated (P < 0.003) in a mean molar ratio of 1:19, similar tothat reported in other birds. In the larger dowitcherspecies, we also examined exposure to 20organochlorine compounds. Organic analyses showedthat the dowitchers had been exposed to DDE, PCBs,dieldrin and trans-nonachlor, but with no significantdifferences in concentrations between Hayward andNewark (P > 0.05).     

Characterization of microbial communities from coastal waters using microarrays

Molecular methods, including DNA probes, were used to identify and enumerate pathogenic Vibrio species in the Chesapeake Bay; our data indicated that Vibrio vulnificus exhibits seasonal fluctuations in number. Our work included a characterization of total microbial communities from the Bay; development of microarrays that identify and quantify the diversity of those communities; and observation of temporal changes in those communities. To identify members of the microbial community, we amplified the 16S rDNA gene from community DNA isolated from a biofilm sample collected from the Chesapeake Bay in February, 2000. The resultant 75 sequences were 95% or more similar to 7 species including two recently described Shewanella species, baltica and frigidimarina, that have not been previously isolated from the Chesapeake. When the genera of bacteria from biofilm after culturing are compared to those detected by subcloning amplified 16S fragments from community DNA, the cultured sample exhibited a strong bias. In oysters collected in February, the most common bacteria were previously unknown. Based on our 16S findings, we are developing microarrays to detect these and other microbial species in these estuarine communities. The microarrays will detect each species using four distinct loci, with the multiple loci serving as an internal control. The accuracy of the microarray will be measured using sentinel species such as Aeromonas species, Escherichia coli, and Vibrio vulnificus. Using microarrays, it should be possible to determine the annual fluctuations of bacterial species (culturable and non-culturable, pathogenic and non-pathogenic). The data may be applied to understanding patterns of environmental change; assessing the health of the Bay; and evaluating the risk of human illness associated with exposure to and ingestion of water and shellfish.     

Do national advisories serve local consumers: an assessment of mercury in economically important North Carolina fish

Consumption of marine fish provides both benefits (lean protein, omega-3 fatty acids and essential nutrients) and risks (main source of mercury (Hg) exposure for humans). Mercury is a potent neurotoxin and the source of more fish advisories nationwide than any other toxicant. Despite the widespread nature of Hg, it is unknown whether local Hg contamination reflects national and regional levels often used as bases to inform consumers of potential fish consumption risk. Thus, the objectives of our study were to examine Hg levels of six commonly consumed marine species harvested locally off the North Carolina coast and to compare our results to published regional (Monterey Bay Aquarium's Seafood Watch List) and national (Environmental Protection Agency, EPA, and Food and Drug Administration, FDA) Hg averages, action levels, and guidelines. We found significant differences in Hg concentrations among collected species, and we identified correlations between Hg concentration and fish length and trophic levels. Collected mahi mahi and triggerfish were below the EPA fish tissue action level (0.3ppm). Wahoo and grouper exceeded the EPA action level but were below the FDA action level (1.0ppm). King mackerel had the highest Hg concentration among targeted species, exceeding both EPA and FDA action levels. Further, our local results were not always consistent with calculated averages from EPA and FDA databases for the same species, and although many of our findings were consistent with Monterey Bay Aquarium's Seafood Watch List (southeast region), recommendations based on Hg levels would conflict with recommendations they provide based on sustainability. We find regional and national averages are not always reflective of local Hg contamination and suggest local data may be needed to accurately assess consumer risk.     

The burrowing crab Neohelice granulata as potential bioindicator of heavy metals in estuarine systems of the Atlantic coast of Argentina

This paper presents the concentrations of total copper, lead, cadmium, and zinc in hepatopancreas of the burrowing crab Neohelice granulata from the Samboromb??n Bay (La Plata River estuary) and the Mar Chiquita coastal lagoon, Argentina. The highest accumulation of lead was observed in Mar Chiquita samples, whereas copper, zinc, and cadmium concentrations were higher in those from Samboromb??n Bay. Marked temporal and geographic availability differences were observed, while sexual differences only were observed for zinc. Finally, the validity of using this species as bioindicator of heavy-metal pollution within the assessed estuarine ecosystems is discussed.     

The fouling of fish farm cage nets as bioindicator of aquaculture pollution in the Adriatic Sea (Croatia)

A fouling assemblage (including density, species richness and diversity, and biomass) growing on netting of fish farm cages was investigated in Stracinska Bay??Location 1 and Peles Bay??Location 2 (Croatia) in order to test the efficiency of fouling as a bioindicator of organic pollution. A total number of 40 algal taxa in Location 1 and total number of 22 algal taxa in Location 2 were identified, with a dominance of opportunistic species (ESG II). We found domination of algal species over animal species and absolute dominance of Rhodophyta which are typical fouler in the Adriatic Sea. Low diversity and species richness with increase in value of the R/P index (occasionally higher than 6) were recorded in Location 2, indicating a certain impact of nutrient enrichment from fish culture facilities on a fouling community structure.     

长江流域水生态评价指标初步研究

通过调研20世纪90年代以来国外主流水生态评价项目中采用的生境指标,统计了14个类型生境指标的使用频率,并针对不同的河流类型,筛选出物理形态特征、河岸带状况、生境组成、生境复杂性、人类干扰和水质状况等6个类型的11项评价指标,推荐作为长江流域河流生境评价指标.随后,利用层次分析法对国外水生生物评价指标进行了统计分析,并...     

Limitations of habitats as biodiversity surrogates for conservation planning in estuaries

Increasing pressures on global biodiversity and lack of data on the number and abundance of species have motivated conservation planners and researchers to use more readily available information as proxies or surrogates for biodiversity. “Habitat” is one of the most frequently used surrogates but its assumed value in marine conservation planning is not often tested. The present study developed and tested three alternative habitat classification schemes of increasing complexity for a large estuary in south-east Australia and tested their effectiveness in predicting spatial variation in macroinvertebrate biodiversity and selecting estuarine protected areas to represent species. The three habitat classification schemes were: (1) broad-scale habitats (e.g., mangroves and seagrass), (2) subdivision of each broad-scale habitat by a suite of environmental variables that varied significantly throughout the estuary, and (3) subdivision of each broad-scale habitat by the subset of environmental variables that best explained spatial variation in macroinvertebrate biodiversity. Macroinvertebrate assemblages differed significantly among the habitats in each classification scheme. For each classification scheme, habitat richness was significantly correlated with species richness, total density of macroinvertebrates, assemblage dissimilarity, and summed irreplaceability. However, in a reserve selection process designed to represent examples of each habitat, no habitat classification scheme represented species significantly better than a random selection of sites. Habitat classification schemes may represent variation in estuarine biodiversity; however, the results of this study suggest they are inefficient in designing representative networks of estuarine protected areas.