Relation of fish and shellfish distributions to habitat and water quality in the Mobile Bay estuary, USA

The Mobile Bay estuary in the northern Gulf of Mexico provides a rich habitat for many fish and shellfish, including those identified as economically and ecologically important. The National Estuary Program in Mobile Bay has focused on restoration of degraded estuarine habitat on which these species depend. To support this effort, we used statistical techniques of ordination, cluster analysis, and discriminant analysis to relate distributions of individual fish and shellfish species and species assemblages to two dozen water quality and habitat variables in a geo-referenced database. Species appeared to respond to dominant gradients of low to high salinity and upland to offshore habitat area; many of the 15 communities identified via cluster analysis showed aggregated spatial distributions that could be related to habitat characteristics. Species in the Mobile River Delta were distinct from those in other areas of the estuary. This analysis supports habitat management in the Mobile Bay estuary; however, due to mobility of organisms among sampling locations and the dynamic environmental conditions in estuaries, we conclude that the analyses presented here are most appropriate for an evaluation of the estuary as a whole.     

Hydrologic disturbance reduces biological integrity in urban streams

The impact of urbanization on stream ecosystems is linked by land cover changes to the alteration of the natural hydrology and subsequent physical disruption of stream biota and habitat. Seasonal floods are part of the natural disturbance regime of many streams, but urbanization increases their frequency and magnitude. This study evaluated the impact of hydrologic disturbance on fish and aquatic macroinvertebrates in 81 (56 urban/25 reference) Ohio streams. Hydrologic variables included annual and monthly 24-h rainfall maxima and computed annual peak discharge, with computation supported by GIS-based drainage area delineation and land cover characterization. Ohio biological criteria for fish and macroinvertebrates measured during the late spring and summer were negatively impacted by annual peak discharge in urban streams as compared to reference streams. Results support the application of stormwater best management practices as part of stream restoration efforts to mitigate urbanization impacts to fish and macroinvertebrates.     

Contaminants in water, sediment and fish biomonitor species from natural and artificial estuarine habitats along the urbanized Gold Coast, Queensland

Metal and pesticide contaminants were measured in water, sediment and fish species in various Gold Coast waterways, Queensland. With the exception of Cu, metal concentrations in water, measured using the diffuse gradients in a thin film (DGT) technique, complied with relevant Australian guidelines. Cu concentrations in these waterways have been related to recreational vessel activities previously. All sediment metal concentrations measured were below the national guidelines, although Cu, Zn and Pb were found to vary significantly between habitat types. Evidence of spikes in sediment pesticide concentrations (some banned over 50 years ago) was observed in some artificial residential waterways. Heavy metals and pesticides were measured in the tissue (muscle, gills and liver) of three economically important species of fish, with different feeding strategies (partly herbivore Arrhamphus sclerolepis, carnivore Acanthopagrus australis, detritivore Mugil cephalus). We tested the hypothesis that fish accumulate different amounts of contaminants from wetland habitats affected by different intensities of anthropogenic activities (i.e., marinas, artificial residential canals, artificial residential lakes, estuaries and natural, vegetated waterways). Significantly higher concentrations of Cu were found in the gills of each fish species from marinas compared to fish caught in other waterways. Furthermore, fish caught in canals had the second highest Cu and natural waterways the lowest. These results support the stated hypothesis for Cu and furthermore indicate that these fish species are suitable as biomonitors in estuarine waterways. Metal and pesticide concentrations in the edible muscle tissue of all fish complied with the Australian Food Standard Code recommended limits for human consumption, apart from As which is likely to be due to bioconcentration of lower toxicity organo-As species. These results indicate a low health risk for humans consuming fish, in terms of contaminant levels. The accumulated body of evidence on contaminants within Gold Coast waterways generally suggests that there are no major threats of metal or pesticide contamination, except for marina facilities which are a major source of Cu which also accumulates in fish. Water quality threats are also highlighted in residential canals, presumably as a consequence of their hydrological design.     

Maryland Biological Stream Survey: A State Agency Program to Assess the Impact of Anthropogenic Stresses on Stream Habitat Quality and Biota

The Maryland Department of Natural Resources is conducting the Maryland Biological Stream Survey, a probability-based sampling program, stratified by river basin and stream order, to assess water quality, physical habitat, and biological conditions in first through third order, non-tidal streams. These streams comprise about 90% of all lotic water miles in the state. About 300 sites (75 m segments) are being sampled during spring and summer each year. All basins in the state will be sampled over a three-year period, 1995-97. MBSS developments in 1995-96 included (1) an electrofishing capture efficiency correction method to improve the accuracy of fish population estimates, (2) two indices of biotic integrity (IBI) for fish assemblages to identify degraded streams, and (3) land use information for catchments upstream of sampled sites to investigate associations between stream condition and anthropogenic stresses. Based on fish IBI scores at 270 stream sites in six basins sampled in 1995, 11% of non-tidal stream miles in Maryland were classified as very poor, 15% as poor, 24% as fair, and 27% as good. IBIs have not yet been developed for stream sites with catchment areas less than 120 hectares (23% of non-tidal stream miles). IBI scores declined with stream acid neutralizing capacity (ANC) and pH, an association that was also evident for fish species richness, biomass, and density. Low IBI scores were associated with several measures of degraded stream habitat, but not with local riparian buffer width. There was a significant negative association between IBI scores and urban land use upstream of sampled sites in the only extensively urbanized basin assessed in 1995. Future plans for the MBSS include (1) identifying all benthic macroinvertebrate samples to genus, (2) developing benthic macroinvertebrate, herpetofaunal, and physical habitat indicators, and (3) enhancing the analysis of stream condition-stressor associations by refining landscape metrics and using multi-variate techniques.     

Assessing changes in the Presque Isle Bay watershed fish community using a modified index of biotic integrity: before and after the elimination of combined sewer overflows

An index of biotic integrity and species richness were used to assess changes in the Presque Isle Bay watershed fish community before and after the elimination of combined sewer overflows (CSOs). The fish community was sampled with a backpack electrofisher in 2011 at 12 stream locations on 4 tributaries of Presque Isle Bay, Erie County, Pennsylvania. All sites were previously sampled in 2001. Significant increases in species richness and index of biotic integrity (IBI) scores were observed in 2011 compared to 2001. The significant increases in species richness and IBI scores occurred following the elimination of 10 CSOs to Garrison Run, 7 CSOs to Cascade Creek, and 37 CSOs to Mill Creek. Despite the increased richness and IBI scores, the fish community remains in poor condition, which may be related to the highly urbanized land use of the watershed. Urban land uses comprise 77 % of the Presque Isle Bay watershed, and in both 2011 and 2001, the watershed as a whole did not meet warm-water habitat criteria. It is unlikely that the fish community will continue to recover without addressing urbanization throughout the watershed.     

Are Toronto’s streams sick? A look at the fish and benthic invertebrate communities in the Toronto region in relation to the urban stream syndrome

Impacts of urbanization on aquatic ecosystems are intensifying as urban sprawl spreads across the global land base. The urban stream syndrome (USS) identifies “symptoms” associated with urban development including changes in biotic communities, hydrology, water chemistry, and channel morphology. Direct relationships between road density (as surrogate of urbanization) and indicators of the USS were identified for streams in the Toronto region. Significant negative relationships were revealed between road density and biological (fish and benthic macroinvertebrate) richness, diversity, and fish Index of Biotic Integrity scores. Significant positive relationships were found between road density and tolerant fish/benthic macroinvertbrates, benthos Family Biotic Index scores, mean summer stream temperature, stream flashiness, and several water quality variables. Analysis of biological data showed that only four fish species and a reduced number of benthic macroinvertebrate families remained at the most urbanized sites. Road density was found to be a major determinant in both the fish and benthic macroinvertebrate community structure.     

Assessing the wildlife habitat value of New England salt marshes: II. Model testing and validation

We tested a previously described model to assess the wildlife habitat value of New England salt marshes by comparing modeled habitat values and scores with bird abundance and species richness at sixteen salt marshes in Narragansett Bay, Rhode Island USA. As a group, wildlife habitat value assessment scores for the marshes ranged from 307-509, or 31-67% of the maximum attainable score. We recorded 6 species of wading birds (Ardeidae; herons, egrets, and bitterns) at the sites during biweekly survey. Species richness (r (2)=0.24, F=4.53, p=0.05) and abundance (r (2)=0.26, F=5.00, p=0.04) of wading birds significantly increased with increasing assessment score. We optimized our assessment model for wading birds by using Akaike information criteria (AIC) to compare a series of models comprised of specific components and categories of our model that best reflect their habitat use. The model incorporating pre-classification, wading bird habitat categories, and natural land surrounding the sites was substantially supported by AIC analysis as the best model. The abundance of wading birds significantly increased with increasing assessment scores generated with the optimized model (r (2)=0.48, F=12.5, p=0.003), demonstrating that optimizing models can be helpful in improving the accuracy of the assessment for a given species or species assemblage. In addition to validating the assessment model, our results show that in spite of their urban setting our study marshes provide substantial wildlife habitat value. This suggests that even small wetlands in highly urbanized coastal settings can provide important wildlife habitat value if key habitat attributes (e.g., natural buffers, habitat heterogeneity) are present.     

Relation of Environmental Characteristics to Fish Assemblages in the Upper French Broad River Basin, North Carolina

Fish assemblages at 16 sites in the upper French Broad River basin, North Carolina were related to environmental characteristics using detrended correspondence analysis, principal components analysis, and linear regression. The primary gradient affecting sites in this basin was related to agricultural influence, characterized by high levels of agricultural land cover, nitrate plus nitrite, sulfate, specific conductance, and sediment. Agricultural influence on the fish assemblage was represented as a trophic shift from specialized insectivores to generalized insectivores and an herbivore. A secondary influence on variation among sites was related to urban land cover, population density, increased concentrations of metals, and soil erodibility. This primarily urban gradient was characterized by an increase in the number of native and introduced fish species, particularly sunfish and omnivores species, and a decline in the percent of piscivores. These results support the identification of indicators for different environmental influences, which can improve the ability of resource managers to diagnose impairment in this basin and in similar basins.     

Assessing perceptions about ecosystem health and restoration options in three east coast estuaries

Increasingly public and governmental agencies are concerned aboutrevitalizing coastal environments. Understanding how the publicuses these areas, and what they see as the most important improvements to these regions is critical to their assessment andmanagement. Uses of three estuaries, and perceptions of possiblemanagement and restoration options, were examined for people whowere interviewed in the New York/New Jersey Harbor, Manasquan Inlet, and Barnegat Bay, New Jersey. Nearly 90% of the people interviewed listed pollution as New Jersey's most important environmental problem. Most people (68%) used the habitat for outdoor sports, but rated communing with nature, walking, and the provision of open `green' space as the most valued uses. Pollution prevention was the most often mentioned habitat improvement desired, and people rated removing pollution, cleaning up garbage, and creating more fish breeding habitat the highest. There were significant locational differences inhow people used the estuaries, and in how they thought they should be improved. People from Barnegat Bay ranked most uses higher than did people from elsewhere, while the people from Manasquan Inlet rated the importance of most remediation and restoration actions higher. Many of the improvements fall withinenvironmental management, including (rank order from high to low)creating more fish breeding habitat, improving native vegetation,improving habitat for birds, increasing plant diversity,improving habitat for butterflies, and enlarging adjacentmarshes. The data provide clear support for the importance ofthese coastal habitats for communing with nature and having open`green space' spaces, and for providing recreationalopportunities. To enhance their value, people want to removepollution and improve both the habitat quality and the educational and recreational facilities.     

Effect of urbanization on the structure and functional traits of remnant subtropical evergreen broad-leaved forests in South China

We investigated the effects of major environmental drivers associated with urbanization on species diversity and plant functional traits (PFTs) in the remnant subtropical evergreen broad-leaved forests in Metropolitan Guangzhou (Guangdong, China). Twenty environmental factors including topography, light, and soil properties were used to quantify the effects of urbanization. Vegetation data and soil properties were collected from 30 400-m² plots at 6 study sites in urban and rural areas. The difference of plant species diversity and PFTs of remnant forests between urban and rural areas were analyzed. To discern the complex relationships, multivariate statistical analyses (e.g., canonical correspondence analysis and regression analysis) were employed. Pioneer species and stress-tolerant species can survive and vigorously establish their population dominance in the urban environment. The native herb diversity was lower in urban forests than in rural forests. Urban forests tend to prefer the species with Mesophanerophyte life form. In contrast, species in rural forests possessed Chamaephyte and Nanophanerophyte life forms and gravity/clonal growth dispersal mode. Soil pH and soil nutrients (K, Na, and TN) were positively related to herb diversity, while soil heavy metal concentrations (Cu) were negatively correlated with herb diversity. The herb plant species diversity declines and the species in the remnant forests usually have stress-tolerant functional traits in response to urbanization. The factors related to urbanization such as soil acidification, nutrient leaching, and heavy metal pollution were important in controlling the plant diversity in the forests along the urban–rural gradients. Urbanization affects the structure and functional traits of remnant subtropical evergreen broad-leaved forests.     

Chironomidae and Oligochaeta for water quality evaluation in an urban river in southeastern Brazil

Considering the importance of benthic macroinvertebrates for diagnosis of variations in the ecological conditions of aquatic habitats, the aim of this study was to investigate the structure of the Chironomidae and Oligochaeta assemblages along an organic pollution gradient. The fauna specimens were obtained with the use of artificial substrates, and the environmental variables were recorded at five sites of the São Lourenço River, during 12 months. Metrics of the assemblage and detrended correspondence analysis were used to verify the response of the fauna to the pollution gradient. Procrustes analysis was used to verify whether the data on the Chironomidae and Oligochaeta assemblages, as well as the taxonomic and numerical resolution of these groups, provide similar results in relation to the pollution gradient. The richness, evenness, and taxonomic composition of the Chironomidae and Oligochaeta assemblages varied significantly among the collection sites, with distinct conservation conditions. Genera of the subfamilies Orthocladiinae and Tanypodinae were associated with the sites upstream of the urban area, where the dissolved oxygen levels are higher. Species of Oligochaeta and the genus Chironomus were associated with more organically polluted sites. No concordance was observed in the response of the Chironomidae and Oligochaeta assemblages in relation to the environmental variables, indicating the need to use both groups in biomonitoring studies. On the other hand, both the data on composition (presence or absence) and those on the lowest taxonomic resolution (abundance of subfamilies) were effective to diagnose the pollution gradient in the river studied. Therefore, when the environmental conditions along a river’s gradient are contrasting, we suggest the use of the lowest taxonomic resolution of Chironomidae and Oligochaeta in biomonitoring. That procedure considerably reduces the assessment time, besides being a method that can be used by people not specializing in the taxonomy of groups.     

A bioassessment approach for mid-continent great rivers: the Upper Mississippi, Missouri, and Ohio (USA)

The objectives of the Environmental Monitoring and Assessment Program for Great River Ecosystems (EMAP-GRE) are to (1) develop and demonstrate, in collaboration with states, an assessment program yielding spatially unbiased estimates of the condition of mid-continent great rivers; (2) evaluate environmental indicators for assessing great rivers; and (3) assess the current condition of selected great river resources. The purpose of this paper is to describe EMAP-GRE using examples based on data collected in 2004-2006 with emphasis on an approach to determining reference conditions. EMAP-GRE includes the Upper Mississippi River, the Missouri River, and the Ohio River. Indicators include biotic assemblages (fish, macroinvertebrates, plankton, algae), water chemistry, and aquatic and riparian physical habitat. Reference strata (river reaches for which a single reference expectation is appropriate) were determined by ordination of the fish assemblage and examination of spatial variation in environmental variables. Least disturbed condition of fish assemblages for reference strata was determined by empirical modeling in which we related fish assemblage metrics to a multimetric stressor gradient. We inferred least disturbed condition from the y-intercept, the predicted condition when stress was least. Thresholds for dividing the resource into management-relevant condition classes for biotic indicators were derived using predicted least disturbed condition to set the upper bound on the least disturbed condition class. Also discussed are the outputs of EMAP-GRE, including the assessment document, multimetric indices of condition, and unbiased data supporting state and tribal Clean Water Act reporting, adaptive management, and river restoration.     

A native species-based index of biological integrity for Hawaiian stream environments

Based upon ecological data provided by a 6-year study of native species assemblage structure and function in near-pristine Limahuli Stream (Kauai), The Hawaii Stream Index of Biological Integrity (HS-IBI) incorporates 11 metrics covering five ecological categories (taxonomic richness, sensitive species, reproductive capacity, trophic–habitat capacity, and tolerance capacity). The HS-IBI was shown to effectively distinguish stream biological condition on a continuum from undisturbed (near-pristine) to severely impaired in sampling of 39 sites (6 estuarine reaches) on 18 Hawaiian streams located on all major islands. A significant relationship was validated between relative levels of human impact occurring within-watersheds (determined through use of a landscape indicator) and IBI ratings with metrics responding predictably to gradients of human influence. For management interpretation of HS-IBI results, a framework comprised of five “integrity classes” (excellent–good–fair–poor–impaired) is provided which can be used to operationalize HS-IBI results obtained through standardized sampling of stream sites that “…translates into a verbal and visual portrait of biological condition.” Through its focus on native species, the HS-IBI incorporates evolutionary and biogeographic variation for the region with biological expectations based upon reference condition benchmarks established in near-pristine stream environments where ecological functioning is naturally self-sustaining and resilient to normal environmental variation. The methods and tools described in this study are appropriate for application in all perennial streams in Hawaii and may be adapted for use in streams on other tropical Pacific islands where native species assemblages persist in near-pristine stream environments.     

An assessment of the impacts of timber plantations on water quality and biodiversity values of Marbellup Brook, Western Australia

Despite the fact that the establishment and maintenance of blue gum plantations can potentially result in the removal of riparian vegetation, the presence of increased levels of sediments, pesticides, and nutrients, and consequently, the loss of in-stream biodiversity, few studies exist that have looked at the impacts of timber plantations on in-stream biota. The goals of this study were thus to determine water quality, riparian condition, and in-stream biodiversity values of local streams draining blue gum plantations in the Marbellup Brook catchment in Western Australia and to compare these values with those of streams associated with other land uses. Selected water quality and habitat variables and in-stream macroinvertebrate biodiversity were measured in 2006 and 2007 at 28 sites falling into five broad categories based on the predominant land use within 200 m of each study reach. Overall, the results indicated that ??blue gum plantation?? sites often had better water quality, riparian condition, and biodiversity values than ??pasture unfenced,?? and sometimes ??pasture fenced?? sites, but water quality and biodiversity values at these sites were not as good as those associated with ??remnant?? native vegetation sites. The location of the blue gum plantation sites along the disturbance gradient investigated was attributed to both present management and past land uses in the subcatchments investigated. As this study was conducted at a time when blue gum plantations were in an on-growing phase, it was recommended that future research on the impact of blue gum plantations on waterways in southwestern Australia should include an investigation of the impacts of timber clear-cutting and extraction. Longer-term cumulative and downstream effects of blue gum plantations on local waterways also need to be investigated.     

Assessment of ecosystem health based on fish assemblages in the Wei River basin,China

In the Wei River basin, the ecosystem is gradually deteriorating due to the rapid growth of the population and the development of economies. It is thus important to assess the ecosystem health and take measures to restore the damaged ecosystem. In this study, an index of biotic integrity (IBI) for fish was developed to aid the conservation of the ecosystem based on a calibration data set. An index of water and habitat quality (IWHQ) was calculated based on environmental variables and habitat quality (QHEI) to identify the environmental degradation in the studied sites. The least degraded sites (IWHQ?≤?2; W1, W5, W10, W12, W13, W14, and W16) were chosen as the reference sites. Six metrics that are sensitive to environmental degradation were utilized to differentiate the reference and the impaired sites using statistical methods. These metrics included the number of species (P1), the total biomass (P2), the number of Cobitidae species (P8), the proportion of species in the middle and low tiers (P10), the proportion of individuals that were classified as sensitive species (P25), and number of individuals in the sample (P39). A continuous scoring method was used to score the six metrics, and four classes were defined to characterize the ecosystem health of the Wei River basin. The fact that the overall IBI scores were negatively correlated with the index of environmental quality (IWHQ) based on the validation data set indicated that the index should be useful for biomonitoring and the conservation of biodiversity. According to the results, more than half of the sites were classified as poor or very poor. The ecosystem health in the Wei River was better than that in the Jing River and the Beiluo River, and this study will be a great reference for water resources management and ecosystem restoration in the Wei River basin.     

The potential use of Atlantic silverside (Menidia menidia) for monitoring estuarine pollution

Monitoring chronic impacts of nearshore pollution on fish in Atlantic marine systems is challenging due to the mobility and seasonal nature of most habitat use. We evaluated Atlantic silverside (Menidia menidia) as a potential indicator of pollution across a gradient of contaminated sites in the Saint John River Estuary, New Brunswick, Canada. Fish returning from offshore in the spring showed no differences in length, weight, or condition factor between sites, but a graded response in condition factor appeared gradually, consistent with levels of contamination. Gonad size peaked in early June, however no differences in GSI were found among sites. By September, most fish collected were young of the year, with a significant bias towards female juveniles at the exposed site. These results indicate that Atlantic silverside are locally resident during their onshore period, and demonstrates their potential as a sentinel species. Sampling should focus on early June prior to the full moon to ensure maximal exposure periods before spawning, or in late October to evaluate growth as fish grow rapidly prior to offshore movement.     

An assessment of restoration success to forests planted for ecosystem restoration in loess plateau, Northwestern China

Using ecosystem attributes identified by the Society of Ecological Restoration International, we assessed three restoration projects in the loess plateau, northwestern China, including planting Larix principis-rupprechtii (LS) and Pinus tabulaeformis (PS) on shrubland, and planting L. principis-rupprechtii on open forest land (LO). The reestablishment of native species in LS and PS was poorer than LO because of the excessive stand density. Species diversity, seedling number, and seedling diversity were significantly higher in LO than in LS and PS. Soil nutrient was also significantly higher in the LO treatment. The vegetation composition, species diversity, and soil nutrient in LO, however, were more similar to these in the reference. Our results indicate that planting L. principis-rupprechtii on open forest land had accelerated the succession of the ecosystem for approximately 30 years. But the poor natural regeneration of L. principis-rupprechtii suggests that post-planting activities in LO are required after timber harvesting or the natural mortality of the L. principis-rupprechtii. Management operation such as selective thinning will be required in LS and PS to promote the true restoration of native species diversity in the future.     

Using species spectra to evaluate plant community conservation value along a gradient of anthropogenic disturbance

The aim of this study was to assess the impact of anthropogenic disturbance on the partitioning of plant communities (species spectra) across a landcover gradient of community types, categorizing species on the basis of their biogeographic, ecological, and conservation status. We tested a multinomial model to generate species spectra and monitor changes in plant assemblages as anthropogenic disturbance rise, as well as the usefulness of this method to assess the conservation value of a given community. Herbaceous and arborescent communities were sampled in five Azorean islands. Margins were also sampled to account for edge effects. Different multinomial models were applied to a data set of 348 plant species accounting for differences in parameter estimates among communities and/or islands. Different levels of anthropogenic disturbance produced measurable changes on species spectra. Introduced species proliferated and indigenous species declined, as anthropogenic disturbance and management intensity increased. Species assemblages of relevance other than economic (i.e., native, endemic, threatened species) were enclosed not only in natural habitats, but also in human managed arborescent habitats, which can positively contribute for the preservation of indigenous species outside remnants of natural areas, depending on management strategies. A significant presence of invasive species in margin transects of most community types will contribute to an increase in edge effect that might facilitate invasion. The multinomial model developed in this study was found to be a novel and expedient tool to characterize the species spectra at a given community and its use could be extrapolated for other assemblages or organisms, in order to evaluate and forecast the conservation value of a site.