Losers in the ‘Rock-Paper-Scissors’ game: The role of non-hierarchical competition and chaos as biodiversity sustaining agents in aquatic systems

Processes occurring within small areas (patch-scale) that influence species richness and spatial heterogeneity of larger areas (landscape-scale) have long been an interest of ecologists. This research focused on the role of patch-scale deterministic chaos arising in phytoplankton assemblages characteristic of “Rock-Paper-Scissors” population dynamics (i.e., competitively non-hierarchical). We employed a simple 2-patch model configuration with lateral mixing and through-flow, and tested the robustness of species richness at the scale of the landscape and spatial heterogeneity. Three different assemblages were used that in a dimensionless box model configuration exhibited chaotic behavior. Our results showed that when a spatial dimension was added to the model configuration, and when all species were shared between patches (i.e., no invading populations), chaos-induced species richness and spatial heterogeneity were quickly reduced with the onset of mixing. While assemblages in each patch were comprised of exactly the same species, they differed in their proportional population densities due to differing stages of succession and the incidence of alternative assemblage structures. Even at very low mixing rates (0.001 d⁻¹), which produced low passive migration rates (0.1% of the total biomass per day), the incidence of high richness and heterogeneity decreased by ∼80%. Interestingly, this sensitivity was not the same for the three assemblages tested. Declines in species richness and spatial heterogeneity associated with mixing were greater in assemblages comprised of competitively dissimilar species (based on the area occupied in the resource-tradeoff space defined by the R* model). The underlying mechanisms may involve the degree to which nutrient dynamics are altered with the arrival of immigrants. Our findings suggest that in partially to well-mixed aquatic systems, the roles of patch-scale non-hierarchical competition and chaos as factors maintaining species richness and spatial heterogeneity may be limited. However, in aquatic systems that experience periods of very low mixing, or even disconnection, non-hierarchical competition and chaos might indeed contribute significantly to biodiversity.     

Natural and anthropogenic influences on the diversity structure of reef fish communities in the Tuamotu Archipelago (French Polynesia)

Despite the rapid rate of human-induced species losses, the relative influence of natural and anthropogenic factors on the functional diversity of species assemblages remains unknown for most ecosystems. A model was previously developed to predict the diversity structure of coral reef fish assemblages in 10 atolls of low human pressure and contrasting morphology of the Tuamotu Archipelago (French Polynesia). This existing model predicted smoothed histograms (spectra) of species richness according to size classes, diet classes and life-history classes of fish assemblages using a combination of environmental characteristics at different spatial scales. The present study applied the model to Tikehau, another atoll of the same archipelago where commercial fishing is practiced and where the same sampling strategy was reproduced. Significant differences appeared between predicted and observed species richness in several size, diet and life-history classes of fish assemblages in Tikehau. Two parameters which were not accounted for in the initial model, i.e. fishing pressure and atoll position within the archipelago, explained together 63% of variance in model residuals, >60% being explained by fishing pressure only. The respective effects of fishing and atoll position on the diversity of coral reef fish assemblages are discussed, with the potential of such modelling approach to assess the relative importance of factors affecting functional diversity within communities.     

Influence of a dominant consumer species reverses at increased diversity

Theory and experiments indicate that changes in consumer diversity affect benthic community structure and ecosystem functioning. Although the effects of consumer diversity have been tested in the laboratory and the field, little is known about effects of consumer diversity in the subtidal zone, one of the largest marine habitats. We investigated the grazing effects of sea urchins on algal abundance and benthic community structure in a natural subtidal habitat of the Galápagos Islands. Three species of urchins (Eucidaris, Lytechinus, and Tripneustes) were manipulated in inclusion cages following a replacement design with three levels of species richness (one, two, and three species) with all possible two-species urchin combinations. Identity was the main factor accounting for changes in the percentage of substrate grazed and benthic community structure. Two out of the three two-species assemblages grazed more than expected, suggesting a richness effect, but analyses revealed that this increased grazing was due to a sampling effect of the largest and commercially valued urchin species, Tripneustes. Benthic community structure in treatments with Eucidaris, Lytechinus, and Tripneustes alone was significantly different at the end of the experiment, suggesting that resource use differentiation occurred. Communities in Tripneustes enclosures were characterized by abundant crustose coralline algae and grazed substrate, while those without it contained abundant green foliose algae (Ulva sp.). An unexpected emergent property of the system was that the most species-rich urchin assemblage underyielded, grazing less than any other assemblage with Tripneustes, effectively reversing its dominant influence observed in the two-species treatments. While further experiments are needed to discern the mechanisms of underyielding, it may be related to changing interspecific interactions as richness increases from two to three species or to density-dependent Tripneustes grazing. This study highlights the general importance of evaluating consumer richness effects across the entire range of species richness considered, as the performance of the most species-rich consumer assemblage could not be predicted by manipulations of intermediate levels of consumer species richness.     

Harbours as marine habitats: hydroid assemblages on sea-walls compared with natural habitats

Sessile hydrozoans constitute a common component of marine rocky communities. We compared the hydrozoan assemblages occurring on sea-walls of commercial harbours with those on natural rocky cliffs along the southern Iberian Peninsula, to identify differences in the multivariate structure of the assemblages and species richness. Harbour hydroid assemblages significantly differed from natural ones mainly due to their qualitative composition. Medusa-less taxa, optimized for low dispersal and long-term persistence on the substratum, are barely represented in harbours, but abundant at natural sites. “Port species” assemblages were composed of (1) small, short-living species with typical opportunistic characteristics; (2) cosmopolitan large-size taxa, significantly represented both in harbours and in natural habitats; (3) non-indigenous species. Contrarily to the expected lower richness of communities in confined areas, our results demonstrate that richness of hydroid assemblages in harbours is comparable to that of natural habitats.     

Physical and biological disturbances interact differently with productivity: effects on floral and faunal richness

Physical and biological disturbances are ecological processes affecting patterns in biodiversity at a range of scales in a variety of terrestrial and aquatic systems. Theoretical and empirical evidence suggest that effects of disturbance on diversity differ qualitatively and quantitatively, depending on levels of productivity (e.g., the dynamic equilibrium model). In this study we contrasted the interactive effects between physical disturbance and productivity to those between biological disturbance and productivity. Furthermore, to evaluate how these effects varied among different components of marine hard-substratum assemblages, analyses were done separately on algal and invertebrate richness, as well as richness of the whole assemblage. Physical disturbance (wave action) was simulated at five distinct frequencies, while biological disturbance (grazing periwinkles) was manipulated as present or absent, and productivity was manipulated as high or ambient. Uni- and multivariate analyses both showed significant effects of physical disturbance and interactive effects between biological disturbance and productivity on the composition of assemblages and total species richness. Algal richness was significantly affected by productivity and biological disturbance, whereas invertebrate richness was affected by physical disturbance only. Thus, we show, for the first time, that biological disturbance and physical disturbance interact differently with productivity, because these two types of disturbances affect different components of assemblages. These patterns might be explained by differences in the distribution (i.e., press vs. pulse) and degree of selectivity between disturbances. Because different types of disturbance can affect different components of assemblages, general ecological models will benefit from using natural diverse communities, and studies concerned with particular subsets of assemblages may be misleading. In conclusion, this study shows that the outcome of experiments on effects of disturbance and productivity on diversity is greatly influenced by the composition of the assemblage under study, as well as on the type of disturbance that is used as an experimental treatment.     

How well do sunken vessels approximate fish assemblages on coral reefs? Conservation implications of vessel-reef deployments

The amount of artificial habitat (termed ??artificial reef??, AR) in marine systems is rapidly increasing, yet the effect of most types of AR on reef communities remains unknown. We examined the role of well-established vessel-reefs in structuring coral reef fish assemblages by comparing assemblages on 7 World War II wrecks (>65?years old) to those on interspersed coral patch reefs of comparable size in a tropical lagoon. Fish abundance, species richness, diversity and feeding guild structure on wrecks were similar to natural reefs; however, species composition differed between the two reef types (R?=?0.189?C0.341, average dissimilarity: 67.3?C68.8?%). Despite being more species-rich and diverse, fish assemblages on larger wrecks were less similar to assemblages on their adjacent natural reefs than smaller wrecks. Wrecks may also have affected fish abundance on adjacent natural reefs, with reefs adjacent to larger wrecks supporting higher abundances than reefs adjacent to smaller wrecks. Our results indicate that increases in vessel-reef habitat may not greatly affect reef fish assemblage parameters, but may affect the relative abundances of particular species.     

Variation in resource consumption across a gradient of increasing intra- and interspecific richness

Based on the premise that ecosystems with more species will function at more efficient rates, declining biodiversity is expected to alter important ecosystem functions, goods, and services across the globe. However, applicability of this general hypothesis to genetic or clonal richness in assemblages composed of few species is understudied. This illustrates the need to expand the focus of biodiversity-ecosystem-function experiments across all levels of biological diversity (including genetic). To explore this generality, we manipulated intraspecific (clonal) and interspecific (species) richness of a primary consumer, Daphnia, and measured assemblage feeding rate and total resource consumption. Our results showed that greater clonal richness had no effect on Daphnia feeding, and greater species richness decreased feeding-related effects of Daphnia. This suggests that multiclonal Daphnia assemblages may be no more efficient at consuming resources than monocultures, and that monocultures of Daphnia may consume resources more efficiently than more species-rich assemblages. The inhibitory effect of increasing richness observed in this study resulted from chemical and mechanical interference among some of the Daphnia taxa. This suggests that consumer-mediated ecosystem functions could be reduced when assemblages include taxa equipped with adaptations for interference competition.     

Are soil mite assemblages structured by the identity of native and invasive alien grasses?

Associations between plants and animals in aboveground communities are often predictable and specific. This has been exploited for the purposes of estimating the diversity of animal species based on the diversity of plant species. The introduction of invasive alien plants into an ecosystem can result in dramatic changes in both the native plant and animal assemblages. Few data exist at the species level to determine whether belowground animal assemblages share the same degree of association to plants. The hypotheses that soil mites (Acari) form assemblages specifically associated with different native grass species in an unmanipulated natural ecosystem and that invasive alien grasses will impact soil mite assemblage composition in this setting were tested. Soil mites sampled beneath five native and two invasive alien species of grasses at the Konza Prairie Biological Station, Kansas, USA, were similarly abundant, species rich, diverse, and taxonomically distinct. No mite species had affinities for a specific grass species. There was no evidence from analysis of similarity, canonical correspondence analysis, or a nonparametric assemblage analysis that the assemblage composition of soil mites was specific to grass species. Results suggest that soil mite assemblages were more related to characteristics of the plant assemblage as a whole or prevailing soil conditions. The most recent invasive alien grass did not support a successionally younger mite fauna, based on the ratio of mesostigmatid to oribatid mites, and neither of the two invasive grasses influenced mite assemblage structure, possibly because they had not yet substantially altered the soil environment. Our results suggest that extrapolations of soil mite diversity based on assumptions of plant specificity would be invalid.     

The importance of defining focal assemblages when evaluating amphibian and reptile responses to land use

Habitat loss and degradation are primary threats to amphibians and reptiles, but the relative effects of common land uses on assemblages and the mechanisms that underlie faunal responses are poorly studied. We reviewed the effects of four prevalent types of habitat alteration (urbanization, agriculture, livestock grazing, and silviculture) on amphibian and reptile species richness and abundance by summarizing reported responses in the literature and by estimating effect sizes across studies for species richness in each land‐use type. We then used a multinomial model to classify species as natural habitat specialists, generalists, and disturbed habitat specialists and examined variation in effect sizes for each land‐use type according to habitat specialization categories. There were mixed conclusions from individual studies, some reporting negative, neutral, or positive effects of land use on species richness and total abundance. A large proportion of studies reported species‐specific effects of individual species abundance. However, in our analysis of effect sizes, we found a general trend of negative effects of land use on species richness. We also demonstrate that habitat associations of common species and species turnover can explain variation in the effect of land use on herpetofauna. Our review highlights the pervasive negative effects of common land uses on amphibians and reptiles, the importance of identifying groups vulnerable to land‐use change (e.g., forest‐associated species) in conservation studies, and the potential influence of disturbance‐associated species on whole assemblage analyses.     

Effect of Experimental Selective Logging on Tropical Butterflies

Abstract: I investigated the effects of an experimental selective logging regime on the assemblage of fruit-feeding butterflies in replicated experimental plots in the Chiquibul Forest, Belize. Over a 12-month period, I caught 1187 individuals of 49 species using fruit-baited traps. Selective logging at densities of six stems per ha 3 years before the study had little effect on butterfly species richness, the abundance of individual species, or the shape of species-abundance distributions. There was no tendency for taxa with restricted geographical ranges to be particularly sensitive to selective logging. Mark-release-recapture results suggest that most butterflies move relatively short distances, but that some dispersal occurs between plots separated by distances of ≥1 km. The apparent similarity of the fruit-feeding butterfly assemblage in selectively logged and unlogged forest contrasts with previous studies of butterfly assemblages but mirrors results for birds in the same plots. A possible explanation is the high frequency of natural disturbance—hurricanes and associated fires—in the Chiquibul Forest. The species present appear to be adapted to naturally disturbed habitats and may therefore be relatively unaffected by selective logging. Local studies of the effects of selective logging must take into account the history of natural and human disturbance in the study area. The results support the case for "ecological forestry," in which sustainable management regimes work within the limits imposed by natural disturbance.     

Connell and Slatyer's models of succession in the biodiversity era

Understanding how species interactions drive succession is a key issue in ecology. In this study we show the utility of combining the concepts and methodologies developed within the biodiversity-ecosystem functioning research program with J. H. Connell and R. O. Slatyer's classic framework to understand succession in assemblages where multiple interactions between early and late colonists may include both inhibitory and facilitative effects. We assessed the net effect of multiple species interactions on successional changes by manipulating the richness, composition, and abundance of early colonists in a low-shore assemblage of algae and invertebrates of the northwestern Mediterranean. Results revealed how concomitant changes in species richness and abundance can strongly alter the net effect of inhibitory vs. facilitative interactions on succession. Increasing richness of early colonists inhibited succession, but only under high levels of initial abundance, probably reflecting the formation of a highly intricate matrix that prevented further colonization. In contrast, increasing initial abundance of early colonists tended to facilitate succession under low richness. Thus, changes in abundance of early colonists mediated the effects of richness on succession.     

Effects of Selective Logging on the Butterflies of a Bornean Rainforest

Abstract: Selective logging has been the main cause of disturbance to tropical forests in Southeast Asia, so the extent to which biodiversity is maintained in selectively logged forest is of prime conservation importance. We compared the butterfly assemblages of Bornean primary rainforest to those of rainforest selectively logged 6 years previously. We sampled by means of replicated transects stratified into riverine and ridge forests and we included roads in the logged forest. There was a three-fold variation in species richness and abundance over the 8-month sampling period. More species and individuals were observed in the logged forest, although between-replicate variability was high. Rarefied species richness was positively correlated with canopy openness within the range of disturbance levels encountered at our forest sites. Within families, there was no significant difference in the number of species between primary and logged forest. There was a significant difference in the relative abundance of species, but this was due largely to the abundance of one or two species. Community ordination separated the sites along a gradient of disturbance and revealed strong differences between riverine and ridge-forest butterfly assemblages in primary forest that were obscured in logged forest. There was no evidence that logging has resulted in a change in the composition of the butterfly assemblages from species with a local distribution to more widespread species. We conclude that at a logged forest site in close proximity to primary forest, low intensities of logging do not necessarily reduce the species richness or abundance of butterflies, although assemblage composition is changed.     

Effectiveness of terrestrial protected areas for conservation of lake fish communities

Freshwater protected areas are rare even though freshwater ecosystems are among the most imperiled in the world. Conservation actions within terrestrial protected areas (TPAs) such as development or resource extraction regulations may spill over to benefit freshwater ecosystems within their boundaries. Using data from 175 lakes across Ontario, Canada, we compared common indicators of fish‐assemblage status (i.e., species richness, Shannon diversity index, catch per unit effort, and normalized‐length size spectrum slopes) to evaluate whether TPAs benefit lake fish assemblages. Nearest neighbor cluster analysis was used to generate pairs of lakes: inside versus outside, inside versus bordering, and bordering versus outside TPAs based on lake characteristics. The diversity and abundance indicators did not differ significantly across comparisons, but normalized‐length size spectrum slopes (NLSS) were significantly steeper in lakes outside parks. The latter indicated assemblage differences (greater abundances of small‐bodied species) and less‐efficient energy transfer through the trophic levels of assemblages outside parks. Although not significantly different, pollution‐ and turbidity‐tolerant species were more abundant outside parks, whereas 3 of the 4 pollution‐intolerant species were more abundant within parks. Twenty‐one percent of the difference in slopes was related to higher total dissolved solids concentrations and angling pressure. Our results support the hypothesis that TPAs benefit lake fish assemblages and suggest that NLSS slopes are informative indicators for aquatic protected area evaluations because they represent compositional and functional aspects of communities.     

Recovery of Endemic Dragonflies after Removal of Invasive Alien Trees

Abstract:  Because dragonflies are very sensitive to alien trees , we assessed their response to large-scale restoration of riparian corridors. We compared three types of disturbance regime—alien invaded , cleared of alien vegetation , and natural vegetation (control)—and recorded data on 22 environmental variables. The most significant variables in determining dragonfly assemblages were percentage of bank cover and tree canopy cover , which indicates the importance of vegetation architecture for these dragonflies. This finding suggests that it is important to restore appropriate marginal vegetation and sunlight conditions. Recovery of dragonfly assemblages after the clearing of alien trees was substantial. Species richness and abundance at restored sites matched those at control sites. Dragonfly assemblage patterns reflected vegetation succession. Thus , initially eurytopic , widespread species were the main beneficiaries of the removal of alien trees , and stenotopic , endemic species appeared after indigenous vegetation recovered over time. Important indicator species were the two national endemics ( Allocnemis leucosticta and Pseudagrion furcigerum ) , which , along with vegetation type , can be used to monitor return of overall integrity of riparian ecology and to make management decisions. Endemic species as a whole responded positively to restoration , which suggests that indigenous vegetation recovery has major benefits for irreplaceable and widespread generalist species .     

The invasibility of marine algal assemblages: role of functional diversity and identity

The emergence of the biodiversity-ecosystem functioning debate in the last decade has renewed interest in understanding why some communities are more easily invaded than others and how the impact of invasion on recipient communities and ecosystems varies. To date most of the research on invasibility has focused on taxonomic diversity, i.e., species richness. However, functional diversity of the communities should be more relevant for the resistance of the community to invasions, as the extent of functional differences among the species in an assemblage is a major determinant of ecosystem processes. Although coastal marine habitats are among the most heavily invaded ecosystems, studies on community invasibility and vulnerability in these habitats are scarce. We carried out a manipulative field experiment in tide pools of the rocky intertidal to test the hypothesis that increasing functional richness reduces the susceptibility of macroalgal communities to invasion. We selected a priori four functional groups on the basis of previous knowledge of local species characteristics: encrusting, turf, subcanopy, and canopy species. Synthetic assemblages containing one, two, three, or four different functional groups of seaweeds were created, and invasion by native species was monitored over an eight-month period. Cover and resource availability in the assemblages with only one functional group showed different patterns in the use of space and light, confirming true functional differences among our groups. Experimental results showed that the identity of functional groups was more important than functional richness in determining the ability of macroalgal communities to resist invasion and that resistance to invasion was resource-mediated.     

Settlement seasonality and temporal changes in hard substrate macrozoobenthic communities of Lesina Lagoon (Apulia, Southern Adriatic Sea)

The macrofauna settling on experimental substrates was studied at two sites of the Lesina Lagoon to test its possible role in monitoring ecological variations in a brackish-water ecosystem. The community settlement was seasonally investigated on 3-month-old wooden poles; the development was monitored from 2001 to 2005. Comparisons with benthic assemblages settled on 10-yr-old poles were also performed. The main hydrological parameters were periodically measured during the study. A total of 38 species were collected. The assemblage reached the highest development in the central lagoon, showing relevant carbonate structures which supported a rich vagile fauna. Close to the sea-water inlet species richness and abundance values were lower, with the disappearance of some brackish-water species. A remarkable salinity drop during 2004 produced some faunistic changes in the assemblages, which however maintained different structures between the study sites, thus confirming macrozoobenthos as an efficient bioindicator of different environmental conditions for transition biotopes and a useful investigation tool in monitoring programmes.     

Quantifying the importance of regional and local filters for community trait structure in tropical and temperate zones

The influence of regional and local processes on community structure is a major focus of ecology. Classically, ecologists have used local-regional richness regressions to evaluate the role of local and regional processes in determining community structure, an approach that has numerous flaws. Here, we implemented a novel trait-based approach that treats local and regional influences as a continuum, rather than a dichotomy. Using hylid frogs (Hylidae), we compared trait dispersion among members of local species assemblages to the trait dispersion in the regional assemblage from which they were drawn. Similarly, we compared trait dispersion in the regional assemblages to dispersion in the continental species pool. We estimated the contributions of local and regional filters, and we compared their strength in temperate and tropical zones. We found that regional and local filters explained 80% of the total variation among local assemblages in community body size dispersion. Overall, regional filters reduced trait dispersion, and local filters increased it, a pattern driven by particularly strong antagonistic effects in temperate zones that reduced the realized total variation by more than 40%. In contrast, local and regional filters acted in concert in tropical regions. Patterns within the tropics did not differ from the random expectation based on a null model, but within the temperate zone, local community filtering was stronger than expected by chance. Furthermore, in temperate regions, antagonistic regional and local filtering masked from 76% to 90% of the total variation in trait dispersion. Together, these results suggest that there are fundamental differences in the scale and identity of the processes determining community structure in temperate and tropical regions.