Elucidation of the tidal influence on bacterial populations in a monsoon influenced estuary through simultaneous observations

The influence of tides on bacterial populations in a monsoon influenced tropical estuary was assessed through fine resolution sampling (1 to 3 h) during spring and neap tides from mouth to the freshwater end at four stations during pre-monsoon, monsoon and post-monsoon seasons. Higher abundance of total bacterial count (TBC) in surface water near the river mouth, compared to the upstream, during pre-monsoon was followed by an opposite scenario during the monsoon When seasonally compared, it was during the post-monsoon season when TBC in surface water was highest, with simultaneous decrease in their count in the river sediment. The total viable bacterial count (TVC) was influenced by the depth-wise stratification of salinity, which varied with tidal fluctuation, usually high and low during the neap and spring tides respectively. The abundance of both the autochthonous Vibrio spp. and allochthonous coliform bacteria was influenced by the concentrations of dissolved nutrients and suspended particulate matter (SPM). It is concluded that depending on the interplay of riverine discharge and tidal amplitude, sediment re-suspension mediated increase in SPM significantly regulates bacteria populations in the estuarine water, urging the need of systematic regular monitoring for better prediction of related hazards, including those associated with the rise in pathogenic Vibrio spp. in the changing climatic scenarios.     

Characterization of microbial communities from coastal waters using microarrays

Molecular methods, including DNA probes, were used to identify and enumerate pathogenic Vibrio species in the Chesapeake Bay; our data indicated that Vibrio vulnificus exhibits seasonal fluctuations in number. Our work included a characterization of total microbial communities from the Bay; development of microarrays that identify and quantify the diversity of those communities; and observation of temporal changes in those communities. To identify members of the microbial community, we amplified the 16S rDNA gene from community DNA isolated from a biofilm sample collected from the Chesapeake Bay in February, 2000. The resultant 75 sequences were 95% or more similar to 7 species including two recently described Shewanella species, baltica and frigidimarina, that have not been previously isolated from the Chesapeake. When the genera of bacteria from biofilm after culturing are compared to those detected by subcloning amplified 16S fragments from community DNA, the cultured sample exhibited a strong bias. In oysters collected in February, the most common bacteria were previously unknown. Based on our 16S findings, we are developing microarrays to detect these and other microbial species in these estuarine communities. The microarrays will detect each species using four distinct loci, with the multiple loci serving as an internal control. The accuracy of the microarray will be measured using sentinel species such as Aeromonas species, Escherichia coli, and Vibrio vulnificus. Using microarrays, it should be possible to determine the annual fluctuations of bacterial species (culturable and non-culturable, pathogenic and non-pathogenic). The data may be applied to understanding patterns of environmental change; assessing the health of the Bay; and evaluating the risk of human illness associated with exposure to and ingestion of water and shellfish.     

Culturable heterotrophic bacteria in seawater and Mytilus galloprovincialis from a Mediterranean area (Northern Ionian Sea – Italy)

Although Mar Piccolo of Taranto (Ionian Sea, Italy) is one of the most important Mytilus galloprovincialis farming areas, data concerning the natural bacterial microbiota of these mussels and their surrounding environment are still scant. This study was carried out seasonally, throughout a year, to determine culturable heterotrophic bacteria both in the water and mussels samples collected at three sampling sites in the Northern Ionian Sea: S. Vito, Lido Gandoli and Lido Silvana. Culturable heterotrophic bacteria abundance was determined by spread plate on Marine Agar. Heterotrophic bacteria were identified by several morphological, culture and biochemical methods. Bacterial concentrations were higher in the mussel samples compared to the corresponding seawater throughout the year. Among Gram negative heterotrophic bacteria, Aeromonas prevailed both in the water (18%) and mussel samples (40%). Other genera such as Moraxella, Pseudomonas, Alcaligenes, Acinetobacter, Flavobacterium, Chromobacterium, Photobacterium and Flexibacter were present with different percentages of isolation. Bacilli were predominant among Gram positive bacteria. Some genera (Lucibacterium and Vibrio) were present only in mussel samples. The results obtained contribute to improve the knowledge on both the bacterial abundance and diversity in mussels and the surrounding seawater in the Northern Ionian Sea.     

珠三角典型河道49种抗生素污染现状及风险评估

为评估抗生素在珠三角地表水中的生态及健康风险,在石岐河布设20个监测点位,分别采集丰水期和枯水期样品,用固相萃取/超高效液相色谱-质谱法对4大类共49种抗生素进行检测。结果显示,在丰水期和枯水期样品中共检出抗生素30种,检出种类和抗生素总浓度都呈现出枯水期明显大于丰水期的现象。从总量上看,喹诺酮类是影响石岐河生态环境安全的主要抗生素类别。石岐河抗生素浓度在枯水期主要受污水处理设施出水的影响,在丰水期主要受沿岸养殖业排水的影响。采用风险熵法对生态风险进行评估,发现枯水期生态风险高于丰水期,头孢匹啉、克林霉素、诺氟沙星3种抗生素处于高生态风险级别,罗红霉素、磺胺二甲异恶唑和奥索利酸3种抗生素处于中等生态风险级别,另有4种抗生素处于低生态风险级别,应引起重视。采用健康风险评价模型对人群健康风险进行评价,发现石岐河抗生素致癌风险和非致癌风险皆处于可接受的健康风险范围内。     

Modelling Wetland Bird Response to Water Level Changes in the Lake Ontario – St. Lawrence River Hydrosystem

Lake Ontario and St. Lawrence River (LOSL) wetland bird abundance and diversity are greatly influenced by lake and river hydrology. Our study used an interdisciplinary ecosystem approach, blending avian and plant ecology, ecohydraulic, statistical ecology and modelling to evaluate potential impacts of water level fluctuations on indicator species representative of the wetland breeding bird assemblages in the entire LOSL freshwater system. Multi-year (2000–2003) bird surveys captured bird distribution and density in wetland habitats under varying degrees of water inandation, depth and fluctuation. Analyses revealed strong associations between estimated breeding pair densities and plant communities, water depth, and degree of water level fluctuation during the breeding season for a suite of wetland bird species using marsh, wet meadow, shrub swamp and treed swamp habitats. These quantitative associations were used to develop wetland bird performance indicators for use in a LOSL water regulation review study. Several bird species also nest at or near the water surface and are thus vulnerable to nest flooding or stranding. Changes to the seasonal hydrology of Lake Ontario and St. Lawrence River that result in an increased frequency or magnitude of these nest failure events may have a significant impact on regional population sustainability. Long term nest record databases were analyzed to create nesting flooding and stranding probability equations based on water level increases and decreases during the breeding season. These species-specific nesting relationships were incorporated into a reproduction index.Many breeding bird species were strongly associated with specific wetland plant communities. Predicted habitat suitability, as measured by estimated breeding pair density, can also change significantly within a specific wetland plant community based solely on changes in water depth during the breeding season. Three indicator species, Black Tern, Least Bittern and Virginia Rail were selected as key environmental performance indicators for alternate regulation plan comparisons.Water regulation criteria should be such that the long term diversity and abundance of wetland plant communities and frequency of spring flooding in marsh habitats during breeding are not reduced. Magnitude and frequency of water level change during the nesting season (May–July) can also adversely impact reproductive success of many wetland bird species. As such, regulation criteria that increase the seasonal magnitude and frequency of water level change may be detrimental to the long term viability of certain regional breeding bird populations.     

Quantitative Analyses of Pollution-Indicator and Pathogenic Bacteria in Mumbai Waters from Ballast Water Exchange Perspective

As large numbers of ships either take in ballast from or discharge their ballast into the Mumbai Harbor region, it is pertinent to quantify microorganisms of health concerns and suggest on the suitability of water for ballasting purposes. To meet with this main aim, a selected set of general and pathogenic bacterial groups and their seasonal variations were studied from the Mumbai Harbor area. Sampling was carried out during postmonsoon (November 2001), pre-monsoon (April 2002) and monsoon (October 2002) periods. We quantified total coliforms and eight other groups of known human pathogenic bacteria from water, sediment, marine plant and animal samples collected in and around Mumbai Harbor. When compared with similar studies from other parts/harbors of the world, the Mumbai Harbor area has over 100-times higher levels of coliforms. The serotypes of Escherichia coli O157 and Shigella-Alkaligens Dispar group were abundant throughout the year. Even Vibrio cholerae, V. parahaemolyticus, Salmonella spp., campylobacters and aeromonads were present in large numbers. This comprehensive study, conducted with a view to quantify these bacterial groups and to evaluate the suitability of these waters for ballasting purposes, clearly suggests that both ballasting and deballasting be avoided in this region and alternative procedures should be developed for treating/handling ballast water.     

Calibration and validation of a regionally and seasonally stratified macroinvertebrate index for West Virginia wadeable streams

Multimetric indices (MMIs) are routinely used by federal, state, and tribal entities to assess the quality of aquatic resources. Because of their diversity, abundance, ubiquity, and sensitivity to environmental stress, benthic macroinvertebrates are well suited for MMIs. West Virginia has used a statewide family-level stream condition index (WVSCI) since 2002. We describe the development, validation, and application of a geographically- and seasonally partitioned genus-level index of most probable stream status (GLIMPSS) for West Virginia wadeable streams. Natural classification strata were evaluated with reference site communities using mean similarity analysis and non-metric multidimensional scaling ordination. Forty-one metrics spanning six ecological categories (richness, composition, tolerance, dominance, trophic groups, and habits) were evaluated for sensitivity, responsiveness, redundancy, range and variability across seasonal (spring and summer) and regional (mountains and plateau) strata. Through a step-wise metric selection process, 8–10 metrics were aggregated to comprise four stratum-specific GLIMPSS models (mountain/plateau and spring/summer). A comparison of GLIMPSS with WVSCI exhibited marked improvements where GLIMPSS detecting greater stream impacts. A variation of the GLIMPSS, which differs only in the family-level taxonomic identification of Chironomidae (GLIMPSS (CF)), was comparable to the full GLIMPSS. These MMIs are robust yet practical tools for evaluating impacts to water quality, instream and riparian habitat, and aquatic wildlife in wadeable riffle-run streams based on sensitivity, responsiveness, precision, and independent validation. These models may be used effectively to detect degradation of the naturally occurring benthic community, assess causes of biological degradation, and plan and evaluate remediation of damaged stream ecosystems.     

Monitoring of multiple drug-resistant pathogens in a selected stretch of Bay of Bengal,India

The present work aims at identification of multiple drug-resistant pathogenic bacteria in a selected stretch, namely, Puri on the Bay of Bengal, India. Six stations at the coast of Puri were selected and samples of water and sediment were collected during the winter of 2008 and 2009 for this study. Thirty-eight pathogenic bacteria were isolated and identified from both the water and the sediment of 6 fixed stations (PU-1a, PU-1b, PU-2, PU-3, PU-4, and PU-5). The identified pathogens were Escherichia coli, Vibrio cholerae, Vibrio parahaemolyticus, Klebsiella pneumoniae, Staphylococcus aureus, Enterococcus faecalis, Pseudomonas aeruginosa, and Proteus mirabilis. Antibiotic sensitivity of the isolated bacteria was studied by using 12 selected antibiotics, commonly used for the medication of human beings and animals. The isolated pathogens from both the water and the sediment samples showed lowest resistance to chloramphenicol (C-30 μg) where as the pathogens showed highest level of resistance to ampicillin (10-μg) among the antibiotics used for the study. Among the isolated pathogens E. faecalis (PU-1a), P. aeruginosa (PU-2 and PU-3), E. coli (PU-3 and PU-4), and K. pneumonia (PU-4) showed resistance to more than four antibiotics. Out of the isolated species, 57.8% pathogens were multi-drug resistant. Antibiotic resistance indexes of all the stations were calculated and found to be in the range of 0.066 to 0.083.     

于桥水库浮游植物群落特征

于桥水库是天津市惟一饮用水水源地,为了研究该水库浮游植物群落特征,于2012年春、夏、秋对于桥水库浮游植物进行了监测分析。结果表明:该水库共鉴定出绿藻(Chlorophyta)、蓝藻(Cyanophyta)、硅藻(Diatoms)、裸藻(Euglenophyta)、甲藻(Pyrrophyta)、隐藻(Cryptophyta)和黄藻(Xanthophyta)7门114种,群落组成以绿藻-硅藻门为主;浮游植物细胞密度具有明显的季节变化规律,表现为春季较低,夏季急剧增长,到了秋季又有所回落。优势种对于桥水库水质的评价结果表明,春季为中营养水体,夏季为富营养化水体,秋季为中富营养水体。春、夏、秋季于桥水库香农-韦弗多样性指数平均值分别为3.22、2.51和3.17,说明2012年于桥水库春季、秋季为贫营养水体,夏季为中营养水体,且有暴发水华的危险。     

High potential for the formation of haloacetic acids in the Karoon River water in Iran

The impact of the total organic carbon (TOC), chlorine dosage, water temperature, reaction time, pH, and seasonal variation on the formation of haloacetic acids (HAAs) in the Karoon River in Iran was studied. The results showed that dichloroacetic acid and trichloroacetic acid were the most detected HAA₅. The HAA₅ formation potential (HAA₅FP) levels in the Karoon River water in spring time, when the water TOC content exceeded 4 mg/L, were 1.38 times higher than during the winter season, when the water TOC content was below 3.5 mg/L. There was not a strong correlation between the HAA₅FP and the residence time for the Karoon River water. For the range of the water temperatures studied, there was little variation in the HAA₅FP in cold water, but in warmer water, the values of the HAA₅FP varied quickly.     

Simultaneous detection of enteric bacteria from surface waters by QPCR in comparison with conventional bacterial indicators

A rapid quantitative polymerase chain reaction (QPCR) method was developed for simultaneous detection of enteric bacteria from surface waters by utilizing a pair of universal primers which targeted four bacteria strains, namely Shigella dysenteriae, Vibrio cholerae, Salmonella typhimurium, and Escherichia coli. It was estimated that the QPCR method had a 94% confidence, and a detection limit as 2.7 E. coli cells per sample in undiluted DNA extracts. The QPCR method was applied for the bacteriological examination of several surface waters in the urban area of Xi'an, China and comparison was made with the conventional bacteria indicators determined by conventional membrane filter (MF) method. As a result, the calibrator cell equivalents (CCE) determined by QPCR was 2.2 to five times of the total coliform CFU, and the characteristics of the bacterial quality of different waters could be well presented by the QPCR results with a higher sensitivity. The coefficient of variation (CV) of data obtained by QPCR was smaller than that by traditional MF method, indicating a more stable analysis result. The QPCR method could thus be used as a supplement of the conventional culture method for more sensitive detection of pathogenic enteric bacteria from water.     

江苏泰州城市霾天和沙尘天气溶胶中细菌群落结构特征研究

近年来,空气污染已成为长三角地区最关键的环境问题之一,气溶胶颗粒物(PM)是最主要的污染物之一.生物气溶胶作为颗粒物的重要组成部分,可能对空气质量和人体健康产生不利影响.利用高通量测序方法研究了江苏省泰州2019年11月至2020年1月期间发生沙尘和霾污染时生物气溶胶中细菌群落结构组成特征.结果表明:冬季沙尘天和霾天气...     

Environmental pollutions impacts on the bacteriological and physicochemical quality of suburban and rural groundwater supplies in Marrakesh area (Morocco)

This study scrutinized bacteriological and chemical quality of groundwater supplies of Marrakesh (Morocco) within a year. It assessed the influence of some chemical factors on fecal and opportunistic pathogenic bacterial communities. The annual average densities of fecal coliforms, fecal streptococci and Pseudomonas aeruginosa were respectively: 1891 colony forming units (CFU)/100 mL, 1246 CFU/100 mL and 206 CFU/100 mL. The total occurrence of these bacteria during the period of study was 94%. Detectable non-O1 Vibrio cholerae was present in 81% of samples and the mean abundances ranged from 0 to 11100 MPN/100 mL. Significant correlations between fecal coliforms and streptococci and between fecal coliforms and non-O1 V. cholerae (p < 0.01) were found. Fecal coliforms can be used to detect the presence of non-O1 V. cholerae in this groundwater. These well waters were greatly mineralized, hard, salt with high concentrations of nitrogenous ions and major elements (Ca(2+), Na(+), Cl(-), SO(2-)(4) and K(+)). Most of chemical parameters were relatively steady with time except for calcium, ammonium, nitrites and organic matter which were seasonally influenced. The degree of correlation between chemical parameters and the abundances of isolated bacteria is heterogeneous. The concentrations of calcium and nitrites favored (p < 0.01) the abundance of fecal coliforms and streptococci, but reduced P. aeruginosa abundances. Calcium, salinity, chlorides, nitrites and nitrates tests can be used for screening in situ when the laboratory facilities are limited. This work is expected to assist local authorities in developing plans and actions to reduce the pollution to acceptable levels.     

渤海排污口邻近海域异养细菌的组成与分布

对渤海4个重点监测排污口（北塘、大蒲河、弥河和虞河）邻近海域异养细菌的组成和分布进行了调查研究。结果表明，分离到的各排污口邻近海域的细菌隶属于变形菌门（Proteobacteria）、厚壁菌门（Firmicutes）、放线菌门（Acti-nobacteria）和拟杆菌门（Bacteroidetes）4个细菌类群，其中变形菌门的细菌最丰富。各排污口的优势菌有所不同，北塘、弥河2个采样点的优势菌分别为Bacillus sp．、Pseudoalteromonas sp．，大蒲河采样点的优势菌为Vibrio sp．和Oceanospirillum sp．，虞河采样点的优势菌为 Shewanella sp．和 Bacillus sp．。多维尺度分析表明，北塘和虞河采样点的细菌种群特征较相近，细菌种群分布特征可能与排污口的海洋环境有一定的相关性。     

东平湖浮游动物对南水北调东线运行的时空响应

东平湖是南水北调东线工程输水线路下游的最后一个调蓄湖泊.为探究调水后的东平湖浮游动物时空响应,于2016—2017年对东平湖浮游动物进行了涵盖春(4月)、夏(7月)、秋(10月)、冬(1月)的4次调查,共检出浮游动物3类72种(属),其中,轮虫51种(70.83％)、枝角类11种(15.28％)、桡足类10种(13.8...     

基于环境DNA技术的江苏省鱼类群落监测应用初探

鱼类是水生生态系统生物多样性的重要组成部分,为了解江苏省地表水监测断面鱼类群落结构特征,利用环境DNA宏条形码技术对2020年4-5月江苏省148个地表水监测断面的鱼类群落进行了调查.在环境DNA样品中共检测到鱼类可操作分类单元(OTU)418个,共注释到10目14科32属46种,其中鲤形目的鱼类有27种,序列占比达8...     

Adjusting the effect of seasonal variability in the bioassessment of streams

Bioassessment tools should distinguish between the effects of anthropogenic degradation in communities and natural temporal changes. The present study tests the influence of natural seasonal variability on macroinvertebrate stream communities assessed by a predictive model (PORTRIV) and a multimetric index (IPtI) calibrated for spring. The scores of PORTRIV decreased significantly between spring and autumn, and between spring and winter (ca. 37 to 53 %, respectively), while those of IPtI did not change significantly between seasons. For non-reference samples, the results of the predictive model also indicate no significant differences. A correction factor (CF) was calculated to adjust the existing differences in the model assessments between seasons, based on the percentage of variation of reference site scores from spring to autumn and winter. After the application of the CF to the OE50 scores of spring reference samples, the differences were no longer significant. Independent reference validation sites confirmed this tendency. This method has the advantage of avoiding large efforts required for the construction of databases from other seasons and the development of new models to allow the assessment of streams in seasons other than spring. Further tests with models developed in regions with more marked seasonal changes should be done to confirm its wider applicability.     

Abundance of sewage-pollution indicator and human pathogenic bacteria in a tropical estuarine complex

Studies on abundance and types of various pollution indicator bacterial populations from tropical estuaries are rare. This study was aimed to estimate current levels of pollution indicator as well as many groups of human pathogenic bacteria and their seasonal variations in different locations in Mandovi and Zuari Rivers in the central west coast of India. The sampling covered the estuarine and upstream regions of these rivers representing premonsoon (May 2005), monsoon (September 2006) and post-monsoon (November 2005). Both the abundance and types of autochthonous and allochthonous microbial populations in the near shore environments are affected by land drainages, domestic sewage outfalls and other discharges. The overall ranges (and their mean abundance; no. ml(-1)) of the monitored groups of bacteria were: total coliforms: 0-29,047 (3,134 ml(-1)); total streptococci: 3-14,597 (798); total vibrios: 13-42,275 (2,530); Escherichia coli: 0-1,333 (123); Vibrio cholerae: 0-3,012 (207); Salmonella spp: 0-1,646 (90); Streptococcus faecalis: 0-613 (88) and Aeromonas spp: 0-2,760 (205). In general, abundance of sewage pollution indicator bacteria such as total coliforms and total streptococci was lower than that reported from many other locations worldwide.     

Bacterial communities in urban aerosols collected with wetted-wall cyclonic samplers and seasonal fluctuations of live and culturable airborne bacteria

Airborne transmission of bacterial pathogens from point sources (e.g., ranches, dairy waste treatment facilities) to areas of food production (farms) has been suspected. Determining the incidence, transport and viability of extremely low levels of pathogens require collection of high volumes of air and characterization of live bacteria from aerosols. We monitored the numbers of culturable bacteria in urban aerosols on 21 separate days during a 9 month period using high volume cyclonic samplers at an elevation of 6 m above ground level. Culturable bacteria in aerosols fluctuated from 3 CFU to 6 million CFU/L of air per hour and correlated significantly with changes in seasonal temperatures, but not with humidity or wind speed. Concentrations of viable bacteria determined by fluorescence staining and flow cytometry correlated significantly with culturable bacteria. Members of the phylum Proteobacteria constituted 98% of the bacterial community, which was characterized using 16S rRNA gene sequencing using DNA from aerosols. Aquabacterium sp., previously characterized from aquatic environments, represented 63% of all clones and the second most common were Burkholderia sp; these are ubiquitous in nature and some are potential human pathogens. Whole genome amplification prior to sequencing resulted in a substantial decrease in species diversity compared to characterizing culturable bacteria sorted by flow cytometry based on scatter signals. Although 27 isolated colonies were characterized, we were able to culture 38% of bacteria characterized by sequencing. The whole genome amplification method amplified DNA preferentially from Phyllobacterium myrsinacearum, a minor member of the bacterial communities, whereas Variovorax paradoxus dominated the cultured organisms.     

A Fish-Based Index of Biotic Integrity to Assess Intermittent Headwater Streams in Wisconsin, USA

I developed a fish-based index of biotic integrity (IBI) to assess environmental quality in intermittent headwater streams in Wisconsin, USA. Backpack electrofishing and habitat surveys were conducted four times on 102 small (watershed area 1.7–41.5 km²), cool or warmwater (maximum daily mean water temperature ≥22 C), headwater streams in spring and late summer/fall 2000 and 2001. Despite seasonal and annual changes in stream flow and habitat volume, there were few significant temporal trends in fish attributes. Analysis of 36 least-impacted streams indicated that fish were too scarce to calculate an IBI at stations with watershed areas less than 4 km² or at stations with watershed areas from 4–10 km² if stream gradient exceeded 10 m/km (1% slope). For streams with sufficient fish, potential fish attributes (metrics) were not related to watershed size or gradient. Seven metrics distinguished among streams with low, agricultural, and urban human impacts: numbers of native, minnow (Cyprinidae), headwater-specialist, and intolerant (to environmental degradation) species; catches of all fish excluding species tolerant of environmental degradation and of brook stickleback (Culaea inconstans) per 100 m stream length; and percentage of total individuals with deformities, eroded fins, lesions, or tumors. These metrics were used in the final IBI, which ranged from 0 (worst) to 100 (best). The IBI accurately assessed the environmental quality of 16 randomly chosen streams not used in index development. Temporal variation in IBI scores in the absence of changes in environmental quality was not related to season, year, or type of human impact and was similar in magnitude to variation reported for other IBI's.