Application of the benthic index of biotic integrity to environmental monitoring in Chesapeake Bay

The Chesapeake Bay benthic index of biotic integrity (B-IBI) was developed to assess benthic community health and environmental quality in Chesapeake Bay. The B-IBI provides Chesapeake Bay monitoring programs with a uniform tool with which to characterize bay-wide benthic community condition and assess the health of the Bay. A probability-based design permits unbiased annual estimates of areal degradation within the Chesapeake Bay and its tributaries with quantifiable precision. However, of greatest interest to managers is the identification of problem areas most in need of restoration. Here we apply the B-IBI to benthic data collected in the Bay since 1994 to assess benthic community degradation by Chesapeake Bay Program segment and water depth. We used a new B-IBI classification system that improves the reliability of the estimates of degradation. Estimates were produced for 67 Chesapeake Bay Program segments. Greatest degradation was found in areas that are known to experience hypoxia or show toxic contamination, such as the mesohaline portion of the Potomac River, the Patapsco River, and the Maryland mainstem. Logistic regression models revealed increased probability of degraded benthos with depth for the lower Potomac River, Patapsco River, Nanticoke River, lower York River, and the Maryland mainstem. Our assessment of degradation by segment and water depth provided greater resolution of relative condition than previously available, and helped define the extent of degradation in Chesapeake Bay.     

Assessing benthic community condition in Chesapeake Bay: does the use of different benthic indices matter?

Federal and state environmental agencies conduct several programs to characterize the environmental condition of Chesapeake Bay. These programs use different benthic indices and survey designs, and have produced assessments that differ in the estimate of the extent of benthic community degradation in Chesapeake Bay. Provided that the survey designs are unbiased, differences may exist in the ability of these indices to identify environmental degradation. In this study we compared the results of three indices calculated on the same data, and the assessments of two programs: the Chesapeake Bay Program and the Mid-Atlantic Integrated Assessment (MAIA). We examined the level of agreement of index results using site-based measures of agreement, evaluated sampling designs and statistical estimation methods, and tested for significant differences in assessments. Comparison of ratings of individual sites was done within separate categories of water and sediment quality to identify which indices summarize best pollution problems in Chesapeake Bay. The use of different benthic indices by these programs produced assessments that differed significantly in the estimate of degradation. A larger fraction of poor sites was classified as good by the Environmental Monitoring and Assessment Program’s Virginian Province and MAIA benthic indices compared to the Chesapeake Bay benthic index of biotic integrity, although overall classification efficiencies were similar for all indices. Differences in survey design also contributed to differences in assessments. The relative difference between the indices remained the same when they were applied to an independent dataset, suggesting that the indices can be calibrated to produce consistent results.     

An assessment of benthic condition in several small watersheds of the Chesapeake Bay, USA

We examined benthic condition in three small watersheds in the Chesapeake Bay. Characterization of benthic condition was based on the combined measurements of benthic fauna, sediment toxicity, and sediment contaminant loads. Significant differences between watersheds were detected for sediment contaminant concentrations and water quality. The intensity of benthic impairment was greatest in the river surrounded by the most developed watershed. Spatial patterns of benthic condition were detected within all three watersheds. In contrast to current, intense focus on nutrient pollution in the Chesapeake Bay, qualitative comparison of our findings to land-use patterns supports findings of other studies that suggest benthic condition in tributaries of the Chesapeake Bay may more closely relate to urbanization than agricultural land uses.     

Sampling Benthic Macroinvertebrates in a Large Flood-Plain River: Considerations of Study Design, Sample Size, and Cost

Estimation of benthic macroinvertebrate populations over large spatial scales is difficult due to the high variability in abundance and the cost of sample processing and taxonomic analysis. To determine a cost-effective, statistically powerful sample design, we conducted an exploratory study of the spatial variation of benthic macroinvertebrates in a 37 km reach of the Upper Mississippi River. We sampled benthos at 36 sites within each of two strata, contiguous backwater and channel border. Three standard ponar (525 cm²) grab samples were obtained at each site ('Original Design'). Analysis of variance and sampling cost of strata-wide estimates for abundance of Oligochaeta, Chironomidae, and total invertebrates showed that only one ponar sample per site ('Reduced Design') yielded essentially the same abundance estimates as the Original Design, while reducing the overall cost by 63%. A posteriori statistical power analysis ( = 0.05, = 0.20) on the Reduced Design estimated that at least 18 sites per stratum were needed to detect differences in mean abundance between contiguous backwater and channel border areas for Oligochaeta, Chironomidae, and total invertebrates. Statistical power was nearly identical for the three taxonomic groups. The abundances of several taxa of concern (e.g., Hexagenia mayflies and Musculium fingernail clams) were too spatially variable to estimate power with our method. Resampling simulations indicated that to achieve adequate sampling precision for Oligochaeta, at least 36 sample sites per stratum would be required, whereas a sampling precision of 0.2 would not be attained with any sample size for Hexagenia in channel border areas, or Chironomidae and Musculium in both strata given the variance structure of the original samples. Community-wide diversity indices (Brillouin and 1-Simpsons) increased as sample area per site increased. The backwater area had higher diversity than the channel border area. The number of sampling sites required to sample benthic macroinvertebrates during our sampling period depended on the study objective and ranged from 18 to more than 40 sites per stratum. No single sampling regime would efficiently and adequately sample all components of the macroinvertebrate community.     

Assessment of Benthic Infaunal Condition on the Mainland Shelf of Southern California

Benthic infauna were sampled from 251 Southern California Bight (SCB) mainland shelf sites in the summer of 1994. Sample sites were selected using a stratified random design, with the primary strata being depth zone, geography, and proximity to point and non-point discharges. Benthic infaunal condition was assessed using the Benthic Response Index (BRI), and by comparing dominant taxa and community parameters (e.g., number of taxa) among strata. Ninety-one percent of sediments in the SCB were found to contain healthy benthic communities. Most stations with altered benthos were located near river mouths, in Santa Monica Bay, or on the Palos Verdes Shelf. Deviations at sites with altered benthic communities were mostly limited to minor changes in species composition, rather than to large declines in diversity or abundance.     

A ten year summary of concurrent ambient water column and sediment toxicity tests in the Chesapeake Bay watershed: 1990-1999

The goal of this study was to identify the relative toxicity ofambient areas in the Chesapeake Bay watershed by using a suiteof concurrent water column and sediment toxicity tests at seventy-five ambient stations in 20 Chesapeake Bay rivers from1990 through 1999. Spatial and temporal variability was examinedat selected locations throughout the 10 yr study. Inorganicand organic contaminants were evaluated in ambient water andsediment concurrently with water column and sediment tests toassess possible causes of toxicity although absolute causalitycan not be established. Multivariate statistical analysis wasused to develop a multiple endpoint toxicity index (TOX-INDEX) at each station for both water column and sediment toxicity data. Water column tests from the 10 yr testing period showed that49% of the time, some degree of toxicity was reported. The mosttoxic sites based on water column results were located inurbanized areas such as the Anacostia River, Elizabeth River andthe Middle River. Water quality criteria for copper, lead,mercury, nickel and zinc were exceeded at one or more of thesesites. Water column toxicity was also reported in localizedareas of the South and Chester Rivers. Both spatial and temporalvariability was reported from the suite of water column toxicitytests. Some degree of sediment toxicity was reported from 62% of the tests conducted during the ten year period. The ElizabethRiver and Baltimore Harbor stations were reported as the most toxic areas based on sediment results.Sediment toxicity guidelines were exceeded for one or more of thefollowing metals at these two locations: arsenic, cadmium,chromium, copper, lead, nickel and zinc. At the Elizabeth Riverstations nine of sixteen semi-volatile organics and two of sevenpesticides measured exceeded the ER-M values in 1990. Ambientsediment toxicity tests in the Elizabeth River in 1996 showedreduced toxicity. Various semi-volatile organics exceeded the ER-M values at a number of Baltimore Harbor sites; pyrene anddibenzo(a,h)anthracene were particularly high at one of thestations (Northwest Harbor). Localized sediment toxicity was alsoreported in the Chester, James, Magothy, Rappahannock, andPotomac Rivers but the link with contaminants was not determined.Both spatial and temporal variability was less for sedimenttoxicity data when compared with water column toxicity data. Acomparison of water column and sediment toxicity data for thevarious stations over the 10 yr study showed that approximatelyhalf the time agreement occurred (either both suite of testsshowed toxicity or neither suite of tests showed toxicity).     

Land use effects on macrobenthic communities in southeastern United States tidal creeks

Runoff from impervious land cover has a major impact on headwater tidal creek ecosystems resulting from ever increasing development along the coastline. Tidal creek habitats can serve as "early warning systems" for anthropogenic stressors due to their proximity to the uplands. In this study, the macrobenthic community was sampled along the longitudinal gradient of tidal creeks (i.e., first order, second order, and third order) in North Carolina, South Carolina, and Georgia which varied in their levels of watershed development (salt marsh, forested, suburban, and urban). This study was designed to assess the condition of macrobenthic communities in tidal creek ecosystems under varying levels of anthropogenic stressors and test whether the conclusions of a previous study in South Carolina (Holland et al., J Exp Mar Biol Ecol 298:151-178, 2004) could be generalized to the southeastern USA. Metrics of community-level and species-specific response within tidal creeks draining watersheds of varying degrees of impervious cover suggest the macrobenthic community may be a useful indicator of development in tidal creeks ecosystems. The differences observed when data from all three states were pooled was consistent with previous findings in South Carolina tidal creeks which illustrates that macrobenthic communities in tidal creeks may react to watershed development in similar patterns along the southeastern coast of the USA.     

Habitat Conditions and Correlations of Sediment Quality Triad Indicators in Delaware Bay

This paper summarizes sampling results from NOAA's National Status and Trends (NS&T) Program for marine environmental quality in Delaware Bay. A stratified-random design was used to determine the spatial extent of sediment contamination and toxicity in Delaware Bay from offshore stations in the coastal zone, the lower estuary, the upper estuary, the fresh/salt mixing zone, and tidal fresh areas. Sediment samples were taken for chemical analyses of major classes of environmental contaminants, a suite of toxicity bioassays, and benthic macrofaunal community assessment to identify patterns of resident species. The tidal-fresh areas and portions of the mixing zone of the study area were heavily contaminated. Contaminant concentrations were frequently above the 90th percentile of EMAP Virginian Province levels. PAHs in the sediment were higher than previously documented, with a major component of PAHs being pyrogenic in origin. Bioassay results were highly variable. Toxicity and contaminant levels were correlated when aggregated into indices, but were only marginally correlated with benthic community impacts. High and low abundance stations were found in all zones. Most of the tidal fresh stations were dominated by pollution tolerant species. Species diversity and abundance were generally lowest in the fresh/salt mixing zone.     

Ecosystem Responses to Extreme Natural Events: Impacts of Three Sequential Hurricanes in Fall 1999 on Sediment Quality and Condition of Benthic Fauna in the Neuse River Estuary, North Carolina

A study was conducted in November 1999 to assess sediment quality and condition of benthic fauna in the Neuse River Estuary (NRE), North Carolina, USA, following the passage of three Atlantic hurricanes during the two months prior. Samples for analysis of macroinfauna (>0.5 mm sieve size), chemical contamination of sediments, and other abiotic environmental variables (salinity, dissolved oxygen, pH, depth, sediment granulometry) were collected at 20 sites from the mouth of the Neuse River at Pamlico Sound to approximately 90 km upstream. Results were compared to those obtained from the same area in July 1998 using similar protocols. Depressed salinity, caused by extreme rainfall and associated high freshwater flow, persisted throughout much of the estuary, which had experienced periods of water-column stratification and hypoxia of underlying waters. Fifteen of the 20 sites, representing 299 km² (76% of the survey area), also showed signs of benthic stress based on a multi-metric benthic index of biotic integrity (B-IBI). Benthic impacts included reductions in the abundance, diversity, and numbers of species and shifts in taxonomic composition, with a notable increase in dominance of the opportunistic polychaete Mediomastus ambiseta as other former dominant species declined. There was no significant increase in the extent of chemical contamination compared to pre-hurricane conditions. Storm-related reductions in dissoved oxygen and salinity were the more likely causes of the observed benthic impacts, though it was not possible, based on these results, to separate storm effects from seasonal changes in the benthos and annual episodes of summer anoxia and hypoxia.     

Benthic macrofaunal assemblages of the San Francisco Estuary and Delta, USA

The spatial and temporal distribution of macrobenthic assemblages in the San Francisco Estuary and Sacramento–San Joaquin River Delta were identified using hierarchical cluster analysis of 501 samples collected between 1994 and 2008. Five benthic assemblages were identified that were distributed primarily along the salinity gradient: (1) a polyhaline assemblage that inhabits the Central Bay, (2) a mesohaline assemblage that inhabits South Bay and San Pablo Bay, (3) a low-diversity oligohaline assemblage primarily in Suisun Bay, (4) a low-diversity sand assemblage that occurs at various locations throughout the Estuary, and (5) a tidal freshwater assemblage in the Delta. Most sites were classified within the same assemblage in different seasons and years, but a few sites switched assemblage designations in response to seasonal changes in salinity from freshwater inflows.     

An approach for identifying the causes of benthic degradation in Chesapeake Bay

We developed an index to differentiate between low dissolved oxygen effects and sediment contamination effects for sites classified as degraded by the Chesapeake Bay Benthic Index of Biotic Integrity (B-IBI), using discriminant analysis. We tested 126 metrics for differences between sites with low dissolved oxygen and sites with contaminated sediments. A total of 16 benthic community metrics met the variable selection criteria and were used to develop a discriminant function that classified degraded sites into one of two stress groups. The resulting discriminant function correctly classified 77% of the low dissolved oxygen sites and 80% of the contaminated sites in the validation data.     

A bioassessment approach for mid-continent great rivers: the Upper Mississippi, Missouri, and Ohio (USA)

The objectives of the Environmental Monitoring and Assessment Program for Great River Ecosystems (EMAP-GRE) are to (1) develop and demonstrate, in collaboration with states, an assessment program yielding spatially unbiased estimates of the condition of mid-continent great rivers; (2) evaluate environmental indicators for assessing great rivers; and (3) assess the current condition of selected great river resources. The purpose of this paper is to describe EMAP-GRE using examples based on data collected in 2004-2006 with emphasis on an approach to determining reference conditions. EMAP-GRE includes the Upper Mississippi River, the Missouri River, and the Ohio River. Indicators include biotic assemblages (fish, macroinvertebrates, plankton, algae), water chemistry, and aquatic and riparian physical habitat. Reference strata (river reaches for which a single reference expectation is appropriate) were determined by ordination of the fish assemblage and examination of spatial variation in environmental variables. Least disturbed condition of fish assemblages for reference strata was determined by empirical modeling in which we related fish assemblage metrics to a multimetric stressor gradient. We inferred least disturbed condition from the y-intercept, the predicted condition when stress was least. Thresholds for dividing the resource into management-relevant condition classes for biotic indicators were derived using predicted least disturbed condition to set the upper bound on the least disturbed condition class. Also discussed are the outputs of EMAP-GRE, including the assessment document, multimetric indices of condition, and unbiased data supporting state and tribal Clean Water Act reporting, adaptive management, and river restoration.     

Fish abundances in shoreline habitats and submerged aquatic vegetation in a tidal freshwater embayment of the Potomac River

Submerged aquatic vegetation (SAV) is considered an important habitat for juvenile and small forage fish species, but many long-term recruitment surveys do not effectively monitor fish communities in SAV. To better understand the impact of recent large increases of SAV on the fish community in tidal freshwater reaches of the Potomac River, we compared traditional seine sampling from shore with drop ring sampling of SAV beds (primarily Hydrilla) in a shallow water (depths, <1.5 m) embayment, Gunston Cove. To accomplish this, we developed species-specific catch efficiency values for the seine gear and calculated area-based density in both shoreline and SAV habitats in late summer of three different years (2007, 2008, and 2009). For the dominant species (Fundulus diaphanus, Lepomis macrochirus, Etheostoma olmstedi, Morone americana, Lepomis gibbosus, and Fundulus heteroclitus), density was nearly always higher in SAV, but overall, species richness was highest in shoreline habitats sampled with seines. Although historical monitoring of fish in Gunston Cove (and throughout Chesapeake Bay) is based upon seine sampling (and trawl sampling in deeper areas), the high densities of fish and larger areal extent of SAV indicated that complementary sampling of SAV habitats would produce more accurate trends in abundances of common species. Because drop ring samples cover much less area than seines and may miss rare species, a combination of methods that includes seine sampling is needed for biodiversity assessment. The resurgence of SAV in tidal freshwater signifies improving water quality, and methods we evaluated here support improved inferences about population trends and fish community structure as indicators of ecosystem condition.     

Dissolved organic iodine in marine waters: role in the estuarine geochemistry of iodine

Non-volatile dissolved organic iodine (DOI) can be a major, or even the dominant, species of dissolved I in coastal, inshore and estuarine waters. It can be converted to IO3- in the presence of an oxidizing agent and to I- by reacting it with a reducing agent. Depending on the exact experimental conditions, the yields of these reactions may not be quantitative. In previous analytical schemes for the determination of IO3-, I- and DOI in marine waters, if oxidation or reduction steps are involved and the concentrations of one or more species are estimated by difference, the presence of DOI can lead to an overestimation of the concentrations of the inorganic species determined by difference and an underestimation of the concentration of DOI. In two cruises covering the James River to the southern Chesapeake Bay and from the southern Chesapeake Bay to the Atlantic, above a salinity (S) of 2, the contribution of DOI to total I increased with decreasing salinity and reached a maximum of 80%. DOI, I- and IO3- were successively the dominant form of dissolved I at 0.1 < S < 15 in the James River estuary, 15 < S < 30 in the Southern Chesapeake Bay and S > 30 in the Atlantic Ocean at the Bay mouth, respectively. Total I behaved conservatively (i.e., no evidence of consumption or production) during estuarine mixing during both cruises. In the southern Chesapeake Bay, total inorganic I was also approximately conservative. The primary process affecting the speciation of dissolved I was the conversion of IO3- to I-. In the James River estuary, there were indications of the conversion of both IO3- and I- to DOI. The concentrations of total I, IO3-, I- and DOI in James River water were 0.121, undetectable, 0.068 and 0.053 microM, respectively. These concentrations of total I and I- are significantly higher while that of IO3- is noticeably lower than those used presently for estimating global riverine input of these I species to the oceans. The riverine flux of DOI to the oceans is presently unknown.     

Periphyton and Sediment Bioassessment in North Florida Bay

Periphyton colonization and sediment bioassessment were used ina survey to compare the relative environmental condition ofsampling sites located in Florida Bay and four peripheral sloughareas during the summer of 1995. Periphyton biomass, pigmentcontent, tissue quality and community composition weredetermined. In addition, benthic community composition and thetoxicities of whole sediments and associated pore waters weredetermined for two species of rooted macrophytes, an epibenthicinvertebrate and bioluminescent bacteria. Several locational differences were observed for the response parameters.Periphyton biomass was significantly greater in the Taylor Riverand the least in Shell Creek (P < 0.05). Most sediments were notacutely toxic to mysid shrimp nor phytotoxic. However, sedimentsfrom the Taylor River were more phytostimulatory than others (P< 0.05). Contaminant bioresidues were similar at most sites,however, mercury, chromium and nickel concentrations weregreater for periphyton colonized in the Taylor River and TroutCreek areas. Structural characteristics of the periphytic algalcommunity usually were statistically similar but a consistenttrend of lower density and diversity was evident for ShellCreek. The benthic community was the least diverse and dense inthe Canal C-111. The results of this study provide an initialindication of differences in the role of several slough areas aspossible sources of bioavailable contaminants to Florida Baywhich warrants additional investigation.     

Spatial and temporal distribution of butyltin compounds in a Northern Chesapeake Bay Marina and river system

This study was designed to: determine dibutyltin (DBT), tributyltin (TBT) and tetrabutyltin (TTBT) bi-weekly for a four month period (June-September 1986) in the Port Annapolis Marina, Mears Marina, Back Creek and Severn River area of Northern Chesapeake Bay; measure DBT, TBT and TTBT for five successive days (Thursday-Monday) to determine possible daily effects (weekday versus weekend) and determine DBT, TBT and TTBT every two hours for one full tidal cycle in the study area. Maximum concentrations of TBT were reported at both Port Annapolis Marina (1801 ng L^–1) and Mears Marina (1171 ng L^–1) during early June followed by significant reductions in TBT during late summer and early fall. All 4 Back Creek Stations also had highest concentrations of TBT in early June; significant reductions occurred during the next three months. The highest concentration of TBT reported in the Severn River (48 ng L^–1) occurred in September. The lowest TBT value (5 ng L^-1) at this station occurred in June. TTBT was not detected in any of the samples. The day of week sampled (Thursday-Monday) during the daily experiments was not found to significantly affect TBT concentrations. TBT evaluations every two hours during the tidal cycle demonstrated that values peaked at 1400 and 1600 hr time intervals. Peak concentrations of TBT occurred during a rising tide. The possible consequence of the measured TBT concentrations for aquatic biota are discussed.     

香溪河库湾氮的时空分布及影响因子分析

为研究解决香溪河库湾水体富营养化问题，需探明库湾水体氮的时空分布及影响因子。2010年12月—2011年11月对香溪河与水库干流交界处至香溪河库湾尾部共12个采样点进行连续监测，分析香溪河库湾氮的时空分布，结果表明，香溪河库湾氮存在明显的时空分布规律。空间上，回水末端处TN和NO₃^--N浓度低，河口处浓度高，随着与回水末端距离的增加，浓度逐渐升高。在时间上，香溪河库湾TN和NO₃^--N浓度的变异系数随着与河口距离的增加总体上逐渐增大，研究时间内的变化程度逐渐变大；且香溪河库湾TN和NO₃^--N浓度在三峡水库不同运行阶段的时间变化规律不同。     

Using the Sediment Quality Triad to characterize baseline conditions in the Anacostia River, Washington, DC, USA

The Sediment Quality Triad (SQT) consists of complementary measures of sediment chemistry, benthic community structure, and sediment toxicity. We applied the SQT at 20 stations in the tidal portion of the Anacostia River from Bladensburg, MD to Washington, DC to establish a baseline of conditions to evaluate the effects of management actions. Sediment toxicity was assessed using 10-day survival and growth tests with the freshwater amphipod, Hyalella azteca and the midge, Chironomus dilutus. Triplicate grabs were taken at each station for benthic community analysis and the Benthic Index of Biotic Integrity (B-IBI) was used to interpret the data. Only one station, #92, exhibited toxicity related to sediment contamination. Sediments from this station significantly inhibited growth of both test species, had the highest concentrations of contaminants, and had a degraded benthic community, indicated by a B-IBI of less than 3. Additional sediment from this station was tested and sediment toxicity identification evaluation (TIE) procedures tentatively characterized organic compounds as the cause of toxicity. Overall, forty percent of the stations were classified as degraded by the B-IBI. However, qualitative and quantitative comparisons with sediment quality benchmarks indicated no clear relationship between benthic community health and contaminant concentrations. This study provides a baseline for assessing the effectiveness of management actions in the Anacostia River.     

Assessment and significance of phytoplankton species composition within Chesapeake Bay and Virginia tributaries through a long-term monitoring program

Phytoplankton and water quality long term trends are presented from a 20-year monitoring program of Chesapeake Bay and several of its major tributaries. Increasing phytoplankton biomass and abundance are ongoing within this estuarine complex, with diatoms the dominant component, along with chlorophytes and cyanobacteria as sub-dominant contributors in the tidal freshwater and oligohaline regions. Diatoms, dinoflagellates, and cryptomonads are among the major flora downstream in the tributaries and within the Chesapeake Bay. Water quality conditions within the three tributaries have remained rather stable over this time period; while there are long term trends of reduced nutrients, increasing bottom oxygen, and decreasing water clarity for the lower Chesapeake Bay. Of note is an increasing trend of cyanobacteria biomass at 12 of the 13 stations monitored at tributary and Chesapeake Bay stations, plus the presence of 37 potentially harmful taxa reported for these waters. However, the overall status of the phytoplankton populations is presently favorable, in that it is mainly represented and dominated by taxa suitable as a major food and oxygen source within this ecosystem. Although potentially harmful taxa are present, they have not at this time exerted profound impact to the region, or replaced the diatom populations in overall dominance.