Extended mutualism between termites and gut microbes: nutritional symbionts contribute to nest hygiene

All higher eukaryotes have established symbiotic relationships with diverse microorganisms. One of the most well-characterized symbiotic systems is that of termites and their intestinal microorganisms, which digest cellulose. Recently, diverse types of symbioses between gut microbes and host organisms including humans have received growing attention for various features of their complex interactions beyond nutrition. In termites, researchers are beginning to explore such function of gut symbionts, but only the contribution to internal immunity against entomopathogen is known in a few species. Here, we report that gut symbionts of the dampwood termite Zootermopsis nevadensis protect nests from the spread of the commensal bacterium Serratia marcescens, which has pathogenic potential. Defaunated termites dispersed S. marcescens in the surrounding environment by feeding on the bacteria, which then survived passage through their alimentary tracts, while non-defaunated termites did not. Loss of gut symbionts caused a significant reduction in intestinal acetate, which is an important carbon source for termites. Culture experiments showed that acetate had significant inhibitory effects on S. marcescens at a concentration as low as 12 mM, which indicated that the intestinal acetate of non-defaunated termites (40–130 mM) was capable of suppressing this bacterium. These results suggest that digestive derivatives produced by intestinal symbionts play an essential role in nest hygiene in addition to their nutritional function for termites. Our study provides a better understanding of the multifunctionality of symbiotic relationships in diverse organisms beyond nutrition.     

四川汉源万顺铅锌矿区蜈蚣草共附生细菌群落结构对重金属的响应特征

为了充分挖掘重金属污染地区植物共附生细菌资源,提高重金属污染土壤生态修复的效率,利用变性梯度凝胶电泳(Denaturing Gradient Gel Electrophoresis,DGGE)技术,对四川省汉源县万顺铅锌矿区蜈蚣草根状茎中共附生细菌多样性和群落结构进行了研究,并分析了共附生细菌群落结构与蜈蚣草根状茎中有效重金属间的关系.结果表明,不同采样点间的蜈蚣草共附生细菌多样性存在明显差异,多样性指数和丰富度指数均表现为尾矿矿口弃渣区选矿区农田.基于DGGE回收条带序列的系统发育显示,蜈蚣草共附生细菌包括芽孢杆菌属(Bacillus)、伯克氏菌属(Burkholderia)、根瘤菌属(Rhizobium)、假单胞菌属(Pseudomonas)、肠杆菌属(Enterobacteria)和弯曲杆菌属(Campylobacter)等细菌类群.相关性分析表明,共附生细菌多样性指数和丰富度指数均与有效Cu、Cd、Pb、Zn和As含量呈显著正相关(p0.05).冗余分析(Redundancy Analysis,RDA)显示,有效As是影响蜈蚣草共附生细菌群落结构的关键因子,对砷含量较高的采样点,砷对蜈蚣草共附生细菌群落有促进作用,在砷含量相对较低的采样点,共附生细菌群落与砷呈负相关.研究表明,蜈蚣草存在丰富的共附生细菌种群,这些种群受蜈蚣草中有效重金属含量的影响明显,在修复重金属特别是砷污染土壤方面表现出潜在应用价值.     

不同营养环境下棕鞭藻共栖细菌的群落结构比较

微藻富含油脂,可以用作合成生物柴油的原料,被认为是最具发展前景的生物质能源.微藻的光合培养体系往往是非纯培养体系,现有研究更多地关注微藻生物量的积累及其对废水环境的净化效果,而对体系中广泛存在的共栖细菌缺乏全面深入的认知.本文通过对棕鞭藻共栖细菌的16S rDNA基因进行高通量测序分析,研究棕鞭藻（Ochromonas）在生活废水、BG11及Glu+BG11（BG11中添加10 g·L^-1葡萄糖）3种不同营养环境中共栖细菌的群落结构差异,进而阐明有机物及复杂废水环境对微藻共栖细菌群落结构的影响效果.结果表明,生活废水、BG11及Glu+BG11 3种营养环境中共栖细菌群落结构存在显著差异,生活废水体系中生物多样性显著高于BG11及Glu+BG11体系,生活废水中共栖细菌香浓（Shannon）多样性指数高达4.32,其次是BG11及Glu+BG11,Shannon指数分别为2.13、1.54.从共栖细菌群落的组成上看,3种营养环境中优势菌属差异显著,生活废水中优势菌属有芽殖杆菌属（Gemmobacter）、鞘脂单胞菌属（Sphingomonas）及玫瑰球菌属（Roseococcus）,相对丰度分别为14.46%、14.9%、14.54%,其中,芽殖杆菌属只在生活废水中有较高丰度.BG11中寡养单胞菌属（Stenotrophomonas）与玫瑰球菌属的丰度分别高达26.86%、51.03%.Glu+BG11中寡养单胞菌属较BG11中显著增加,达到82.41%,而玫瑰球菌属较生活废水及BG11中则明显降低,菌群丰度仅为6.2%.对比3种营养环境,玫瑰球菌属均具有较高丰度,是棕鞭藻良好的共生菌.     

Direct evidence for maternal inheritance of bacterial symbionts in small deep-sea clams (Bivalvia: Vesicomyidae)

Bacterial symbiont transmission is a key step in the renewal of the symbiotic interaction at each host generation, and different modes of transmission can be distinguished. Vesicomyidae are chemosynthetic bivalves from reducing habitats that rely on symbiosis with sulfur-oxidizing bacteria, in which two studies suggesting vertical transmission of symbionts have been published, both limited by the imaging techniques used. Using fluorescence in situ hybridization and transmission electron microscopy, we demonstrate that bacterial symbionts of Isorropodon bigoti, a gonochoristic Vesicomyidae from the Guiness cold seep site, occur intracellularly within female gametes at all stages of gametogenesis from germ cells to mature oocytes and in early postlarval stage. Symbionts are completely absent from the male gonad and gametes. This study confirms the transovarial transmission of symbionts in Vesicomyidae and extends it to the smaller species for which no data were previously available.     

New symbiotic hypothesis on the origin of eukaryotic flagella

The origin of eukaryotic flagella has long been a mystery. Here we review the possibility that flagella sprouted evolutionarily from the eukaryotic cell proper seems very unlikely because it is hard to imagine what function and benefit in natural selection the flagella would have provided to the cells when they first emerged as simple buds. Lynn Margulis 1970 spirochete hypothesis, though popular still, has never been confirmed. Moreover, the absence of tubulin and axonemal dynein in the spirochetes and the incapability of the bacterial and eukaryotic membranes making a continuum now suggest that the hypothesis is outdated. Tubulin genes were recently identified in a new bacteria division, verrucomicrobia, and microtubules have also been found in one of these species, epixenosomes, the defensive ectosymbionts. On the basis of these data, we propose a new symbiotic hypothesis: that the mid-ancestor of eukaryotic cells obtained epixenosomelike verrucomicrobia as defensive ectosymbionts and the ectosymbionts later became endosymbiotic. They still, however, protruded from the surface of their host to play their role. Later, many genes were lost or incorporated into the host genome. Finally, the genome, the bacterial membrane, and the endosymbiotic vesicle membrane were totally lost, and fingerlike protrusions with microtubules formed. As the cells grew larger, the defensive function of the protrusions eventually weakened and then vanished. Some of the protrusions took on a new role in cell movement, which led them to evolve into flagella. The key step in this process was that the dynein obtained from the host evolved into axonemal dyneins, attaching onto the microtubules and forming motile axonemes. Our hypothesis is unproven, but it offers a possible explanation that is consistent with current scientific thought. We hope that our ideas will stimulate additional studies on the origin of eukaryotic flagella and on investigations of verrucomicrobia. Whether such studies confirm, refine, or replace our hypothesis, they should nevertheless further our understanding of the origin of eukaryotic cells.     

Rhizosphere bacteria and their use to increase plant productivity: A review

Rhizosphere bacteria influence plant growth through several mechanisms. Beneficial interactions are often difficult to identify and isolate for study, and therefore favorable effects on plant productivity are not easily described in quantitative terms. Major beneficial activities of soil bacteria include solubilization of minerals, fixation of nitrogen, production of growth-promoting hormones and competitive suppression of pathogens. Most recent research to improve crop responses has emphasized the study of nitrogen-fixing bacteria indigenous to rhizospheres of cereal crops and other grasses. The amount of nitrogen available to crops from fixation by these organisms is significant under some circumstances, but efforts to control and increase fixation activity have not been consistently successful. Despite considerable research, inoculation experiments frequently fail to improve rates of nitrogen fixation. However, substantial progress has been achieved in understanding mechanisms involved in plant—bacterial interactions, and in defining conditions which control them. Also, recent studies show clearly that bacterial inoculation can be highly beneficial even when nitrogen fixation is not affected. Further research is needed to develop new and effective methods for suppressing growth of competing microorganisms, and promoting dominance of those most useful to plants. Environmental manipulation may not be sufficient to achieve this objective. Genetic development of both plant and bacterial lines which enhance desired interactions is likely to be the most productive research effort for the future.     

Molecular analysis of long-term biofilm formation on PVC and cast iron surfaces in drinking water distribution system

To understand the impacts of different plumbing materials on long-term biofilm formation in water supply system, we analyzed microbial community compositions in the bulk water and biofilms on faucets with two different materials-polyvinyl chloride （PVC） and cast iron, which have been frequently used for more thanlO years. Pyrosequencing was employed to describe both bacterial and eukaryotic microbial compositions. Bacterial communities in the bulk water and biofilm samples were significantly different from each other. Specific bacterial populations colonized on the surface of different materials. Hyphomicrobia and corrosion associated bacteria, such as Acidithiobacillus spp., Aquabacterium spp., Limnobacter thiooxidans, and Thiocapsa spp., were the most dominant bacteria identified in the PVC and cast iron biofilms, respectively, suggesting that bacterial colonization on the material surfaces was selective. Mycobacteria and Legionella spp. were common potential pathogenic bacteria occurred in the biofilm samples, but their abundance was different in the two biofilm bacterial communities. In contrast, the biofilm samples showed more similar eukaryotic communities than the bulk water. Notably, potential pathogenic fungi, i.e., Aspergillus spp. and Candida parapsilosis, occurred in similar abundance in both biofilms. These results indicated that microbial community, especially bacterial composition was remarkably affected by the different pipe materials （PVC and cast iron）.     

环丙沙星胁迫猪粪生物转化中抗性基因微生物响应分析

抗性基因（Antibiotic Resistance Genes,ARGs）是一种新兴污染物,持续累积会引发环境健康风险,也可通过水平转移诱导耐药细菌产生,从而危害人类健康与国家生物安全.当前关于ARGs的研究多集中于水、土壤、大气等环境介质,固体废弃物领域ARGs研究尚局限于其丰度变化与影响因素方面,对抗生素-ARGs剂量-效应关系、导致ARGs丰度变化的微生物响应机制仍有待深入研究.基于此,开展了不同浓度水平环丙沙星（Ciprofloxacin,CIP）胁迫下猪粪堆肥试验,环丙沙星添加量分别为25 mg/kg（A25）、50 mg/kg（A50）、100 mg/kg（A100）,同时设置空白对照0 mg/kg（CK）.采用分子生物学手段、网络分析、统计学分析等方法,解析了不同浓度环丙沙星胁迫猪粪好氧堆肥过程中喹诺酮类ARGs丰度变化的微生物响应关系,并重点探讨了潜在宿主菌中致病菌的分布及其与ARGs的相关性.结果表明:①经堆肥处理,CK、A25和A100堆体中喹诺酮类ARGs总丰度均受到不同程度削减,A50堆体中ARGs总丰度未被削减（升高2.73倍）.而高温期除CK外,3个处理组中ARGs丰度均显著降低（P < 0.05）,表明堆肥高温期或是削减ARGs的关键阶段.②狭义梭菌属（Clostridium_sensu_stricto_1）、水微菌属（Aquamicrobium）、乳杆菌属（Lactobacillus）及交替赤杆菌属（Altererythrobacter）既是堆肥环境中优势菌属,也是喹诺酮类ARGs潜在宿主微生物,主要分布在厚壁菌门（Firmicutes）和变形菌门（Proteobacteria）.③丰度较高的致病菌Clostridium_sensu_stricto_1和链球菌（Streptococcus）是喹诺酮类ARGs的潜在宿主菌,且至堆肥腐熟期,仍有部分致病菌均未被完全去除,可见猪粪堆肥过程中存在ARGs向致病菌转移的环境健康风险.研究显示,加强高温期干预调控,是有效阻控ARGs环境污染行为的关键节点,研究可为固废资源化过程中ARGs环境健康风险防控提供参考.      

The roles of tolerance in the evolution, maintenance and breakdown of mutualism

Tolerance strategies are cost-reduction mechanisms that enable organisms to recover some of the fitness lost to damage, but impose limited or no cost on antagonists. They are frequently invoked in studies of plant–herbivore and of host–parasite interactions, but the possible roles of tolerance in mutualism (interspecific cooperation) have yet to be thoroughly examined. This review identifies candidate roles for tolerance in the evolution, maintenance and breakdown of mutualism. Firstly, by reducing the cost of damage, tolerance provides a key pathway by which pre-mutualistic hosts can reduce the cost of association with their parasites, promoting cooperation. This holds for the evolution of ‘evolved dependency’ type mutualism, where a host requires an antagonist that does not direct any reward to their partner for some resource, and of ‘outright mutualism’, where participants directly trade benefits. Secondly, in outright mutualism, tolerance might maintain cooperation by reducing the cost of a persisting negative trait in a symbiotic partner. Finally, the evolution of tolerance might also provide a pathway out of mutualism because the host could evolve a cheaper alternative to continued cooperation with its mutualistic partner, permitting autonomy. A key consequence of tolerance is that it contrasts with partner choice mechanisms that impose large costs on cheats, and I highlight understanding any trade-off between tolerance and partner choice as an important research topic in the evolution of cooperation. I conclude by identifying tolerance as part of a more general phenomenon of co-adaptation in mutualism and parasitism that drives the evolution of the cost/benefit ratio from the interaction.     

Innate humoural immunity is related to eggshell bacterial load of European birds: a comparative analysis

Fitness benefits associated with the development of a costly immune system would include not only self-protection against pathogenic microorganisms but also protection of host offspring if it reduces the probability and the rate of vertical transmission of microorganisms. This possibility predicts a negative relationship between probabilities of vertical transmission of symbionts and level of immune response that we here explore inter-specifically. We estimated eggshell bacterial loads by culturing heterotrophic bacteria, Enterococcus, Staphylococcus and Enterobacteriaceae on the eggshells of 29 species of birds as a proxy of vertical transmission of bacteria from mother to offspring. For this pool of species, we also estimated innate immune response (natural antibody and complement (lysis)) of adults, which constitute the main defence against bacterial infection. Multivariate general linear models revealed the predicted negative association between natural antibodies and density of bacteria on the eggshell of 19 species of birds for which we sampled the eggs in more than one nest. Univariate analyses revealed significant associations for heterotrophic bacteria and for Enterobacteriaceae, a group of bacteria that includes important pathogens of avian embryos. Therefore, these results suggest a possible trans-generational benefit of developing a strong immune system by reducing vertical transmission of pathogens.     

Impacts of cadmium addition on the alteration of microbial community and transport of antibiotic resistance genes in oxytetracycline contaminated soil

The large-scale development in livestock feed industry has increased the chances of antibiotics and heavy metals contamination in the soil. The fate of antibiotic resistance genes (ARGs) and microbial community in heavy metals and antibiotic contaminated soil is still unclear. In this study, we investigated the effect of cadmium (Cd) addition on the transport of ARGs, microbial community and human pathogenic bacteria in oxytetracycline (OTC) contaminated soil. Results showed that the addition of OTC significantly increased the abundance of ARGs and intI1 in the soil and lettuce tissues. The addition of Cd to OTC treated soil further increased the abundance and translocation of ARGs and intI1. Moreover, Cd promoted the transfer of potential human pathogenic bacteria (HPB) into lettuce tissues. Compared with O10 treatment, the addition of Cd decreased the concentration of OTC in soil and lettuce tissue, but slightly increased the fresh weight of lettuce tissues. Redundancy analysis indicated that bacterial community succession is a major factor in ARGs variation. Network analysis indicated that the main host bacteria of ARGs were mainly derived from Proteobacteria. Correlation analysis showed that intI1 was significantly correlated with tetG, tetC, sul1, sul2, ermX, and ermQ. Meanwhile, potential HPB (Clostridium, and Burkholderia) was significantly correlated with intI1 and eight ARGs (tetG, tetC, tetW, tetX, sul1, sul2, ermX, and ermQ.). The findings of this study suggest that the addition of heavy metals to agricultural fields must be considered in order to reduce the transfer of ARGs in the soil and crops.     

基于高通量测序技术分析青岛市典型海滩沉积物的微生物多样性

为了解青岛典型海滩沉积物环境中微生物群落结构的组成及差异性,采集了青岛市五大典型海水浴场的近海沉积物样品,利用高通量测序技术研究了不同沉积物环境中微生物群落结构的组成差异。结果表明,在门的水平上,五大海水浴场沉积物中变形菌门（Proteobacteria）占主导地位。主坐标分析（principal co-ordinates analysis,PCoA）的结果表明,五大海水浴场沉积物环境中的微生物群落结构组成存在明显差异（p<0.05）。通过比对致病菌数据库发现,五大海水浴场沉积物环境中检测到潜在致病菌属13种,包含致病菌种共有17种。其中,弧菌属（Vibrio）的相对丰度均高于其他潜在致病菌属,且在第三和金沙滩海水浴场中相对丰度最高,对海洋环境生态及海产品养殖造成一定的影响。     

Promiscuity in mice is associated with increased vaginal bacterial diversity

Differences in the number of sexual partners (i.e., mating system) have the potential to exert a strong influence on the bacterial communities present in reproductive structures like the vagina. Because this structure serves as a conduit for gametes, bacteria present there may have a pronounced, direct effect on host reproductive success. As a first step towards the identification of the relationship between sexual behavior and potentially pathogenic bacterial communities inhabiting vital reproductive structures, as well as their potential effects on fitness, I sought to quantify differences in bacterial diversity in a promiscuous and monogamous mammal species. To accomplish this, I used two sympatric species of Peromyscus rodents—Peromyscus californicus and Peromyscus maniculatus that differ with regard to the number of sexual partners per individual to test the hypothesis that bacterial diversity should be greater in the promiscuous P. maniculatus relative to the monogamous P. californicus. As predicted, phylogenetically controlled and operational taxonomic unit-based indices of bacterial diversity indicated that diversity is greater in the promiscuous species. These results provide important new insights into the effects of mating system on bacterial diversity in free-living vertebrates, and may suggest a potential cost of promiscuity.     

Phylogenetic diversity and specificity of bacteria associated with Microcystis aeruginosa and other cyanobacteria

Interactions between bacteria and cyanobacteria have been suggested to have a potential to influence harmful algal bloom dynamics; however, little information on these interactions has been reported. In this study, the bacterial communities associated with five strains of Microcystis aeruginosa, three species of other Microcystis spp., and four representative species of non-Microcystis cyanobacteria were compared. Bacterial 16S rDNA fragments were amplified and separated by denaturing gradient gel electrophoresis (DGGE) followed by DNA sequence analysis. The similarities among bacterial communities associated with these cyanobacteria were compared to the digitized DGGE profiles using the cluster analyses. The bacterial community structure of all cyanobacterial cultures di ered. Cluster analysis showed that the similarity values among M. aeruginosa cultures were higher than those of other cyanobacterial cultures. Sequence analysis of DGGE fragments indicated the presence of bacteria including, Alphaproteobacteria, Betaproteobacteria, Gammaproteobacteria, Bacteroidetes and Actinobacteria in the cyanobacterial cultures. Members of the Sphingomonadales were the prevalent group among the Microcystis-associated bacteria. The results provided further evidence for species-specific associations between cyanoabcteria and heterotrophic bacteria, which are useful for understanding interactions between Microcystis and their associated bacteria.     

Profile of the culturable microbiome capable of producing acyl-homoserine lactone in the tobacco phyllosphere

Bacterial populations coexisting in the phyllosphere niche have important effects on plant health. Quorum sensing (QS) allows bacteria to communicate via diffusible signal molecules, but QS-dependent behaviors in phyllosphere bacterial populations are poorly understood. We investigate the dense and diverse N-acyl-homoserine lactone (AHL)-producing phyllosphere bacteria living on tobacco leaf surfaces via a culture-dependent method and 16S rRNA gene sequencing. Our results indicated that approximately 7.9%-11.7% of the culturable leaf-associated bacteria have the ability to produce AHL based on the assays using whole-cell biosensors. Sequencing of the 16S rRNA gene assigned the AHL-producing strains to two phylogenetic groups, with Gammaproteobacteria (93%) as the predominant group, followed by Alphaproteobacteria. All of the AHL-producing Alphaproteobacteria were affiliated with the genus Rhizobium, whereas the AHL-producing bacteria belonging to the Gammaproteobacteria mainly fell within the genera Pseudomonas, Acinetobacter, Citrobacter, Enterobacter, Pantoea and Serratia. The bioassays of supernatant extracts revealed that a portion of the strains have a remarkable AHL profile for AHL induction activity using the two different biosensors, and one compound in the active extract of a representative isolate, NTL223, corresponded to 3-oxo-hexanoyl-homoserine lactone. A large population size and diversity of bacteria capable of AHL-driven QS were found to cohabit on leaves, implying that cross-communication based AHL-type QS may be common in the phyllosphere. Furthermore, this study provides a general snapshot of a potential valuable application of AHL-producing bacteria inhabiting leaves for their presumable ecological roles in the phyllosphere.     

Symbiotic bacteria in hornet pupal silk

The silk weave spun by hornet larvae before undergoing pupal metamorphosis is composed of fibers and sheets, both containing symbiotic bacteria. The bacteria are secreted from the silk gland and are glued to the secreted silk, which is made up of amino-acid polymers. In the dark, it possesses at first an electric current amounting to several hundred nanoamperes (nA) (i.e., a thermoelectric property), and a high electric capacitance of up to several milliFarads (mF). This electrical charge is used gradually by the developing pupa. The symbiotic bacteria penetrate through slits in the coat of the silk fibers to the core or into pockets in the sheets, where they gradually digest parts of the silk weave, thereby nullifying its mechanical properties and facilitating in due time the egress of the imago from the puparium.     

铜绿微囊藻与藻际细菌Ma-B1菌株的相互作用

藻与细菌通常共生于淡水生境,形成藻-菌共生体系,藻际细菌是水体生态系统中的重要组成部分,对藻的消长起重要的调控作用,但有关藻际微环境中藻与细菌的互作机制还不清楚. 采用传统的细菌平板培养方法,从太湖优势水华藻——铜绿微囊藻(Microcystis aeruginosa)细胞表面分离出一株藻际细菌Ma-B1,基于生理、生化试验和16S rRNA基因序列分析,初步鉴定为甲基营养芽孢杆菌(Bacillus methylotrophicus). 通过测定细胞生长,分析藻-菌相互作用机理. 结果表明:一定浓度(＞60 μg/mL)的Ma-B1的胞外代谢物可显著抑制铜绿微囊藻的生长(培养基为BG11,28 ℃/日,22 ℃/夜,3 000 lx,光暗比为14 h∶10 h);铜绿微囊藻的胞外滤液(500 μL/mL)对Ma-B1的生长有一定的促进作用,但其总滤液(500 μL/mL)显著促进Ma-B1的生长;Ma-B1细胞对铜绿微囊藻的生长没有显著影响,而高浓度(藻菌比10∶1)的铜绿微囊藻细胞则可显著抑制Ma-B1的生长. 铜绿微囊藻与Ma-B1之间存在复杂的相互抑制或促进关系,共同影响着藻、菌在自然水体生态系统中的消长.      

细菌对城市污水中小球藻生长和油脂积累的影响

利用城市污水培养微藻,可在实现污水无害化处理的同时,培养微藻回收生物质能源.污水为微藻的培养提供氮、磷等营养组分和所需水源,同时污水中的细菌可分解污水中的有机物产生CO_2,为微藻提供生长所需碳源.菌藻混合培养既可以收获藻类,又可以净化污水,由于城市污水含有大量的原生菌类,且微藻与细菌之间存在着互生、拮抗等复杂的相互关系,因此,需要筛选出既能够适应于城市污水又能促进微藻生长和油脂积累的优势菌种.本文从不同来源的13种细菌中筛选出2种能够显著促进蛋白核小球藻(Chlorella pyrenoidosa)生长和油脂积累细菌,并分析了微藻培养结束后城市污水的菌群结构.结果表明:污水中光合细菌初始吸光度D600为0.01,W4菌初始吸光度D_(600)为0.02时,对小球藻的干重和油脂产量促进作用最显著,油脂产量分别可达0.114 g·L~(-1)、0.113 g·L~(-1),油脂产量比空白对照组分别提高了22.58%、21.50%.通过对生成的脂肪酸甲酯进行气相色谱分析,结果显示光合细菌和W4菌的添加并未改变小球藻脂肪酸成分,但提升了单不饱和脂肪酸的含量,有利于提升所得生物柴油的品位.培养结束后污水的菌群结构分析显示投加细菌会降低污水中菌群的丰富度和多样性,初步判断是投加的菌在藻液中能够成为优势菌群,且实验组中丛毛单胞菌属(Comamonas)和假单胞菌属(Pseudomonas)的丰度大于对照组.     

Genotypic and phenotypic diversity in populations of plant-probiotic <Emphasis Type="Italic">Pseudomonas</Emphasis> spp. colonizing roots

Several soil microorganisms colonizing roots are known to naturally promote the health of plants by controlling a range of plant pathogens, including bacteria, fungi, and nematodes. The use of theses antagonistic microorganisms, recently named plant-probiotics, to control plant-pathogenic fungi is receiving increasing attention, as they may represent a sustainable alternative to chemical pesticides. Many years of research on plant-probiotic microorganisms (PPM) have indicated that fluorescent pseudomonads producing antimicrobial compounds are largely involved in the suppression of the most widespread soilborne pathogens. Phenotype and genotype analysis of plant-probiotic fluorescent pseudomonads (PFP) have shown considerable genetic variation among these types of strains. Such variability plays an important role in the rhizosphere competence and the biocontrol ability of PFP strains. Understanding the mechanisms by which genotypic and phenotypic diversity occurs in natural populations of PFP could be exploited to choose those agricultural practices which best exploit the indigenous PFP populations, or to isolate new plant-probiotic strains for using them as inoculants. A number of different methods have been used to study diversity within PFP populations. Because different resolutions of the existing microbial diversity can be revealed depending on the approach used, this review first describes the most important methods used for the assessment of fluorescent Pseudomonas diversity. Then, we focus on recent data relating how differences in genotypic and phenotypic diversity within PFP communities can be attributed to geographic location, climate, soil type, soil management regime, and interactions with other soil microorganisms and host plants. It becomes evident that plant-related parameters exert the strongest influence on the genotypic and phenotypic variations in PFP populations.     

A Myanmar amber cockroach with protruding feces contains pollen and a rich microcenosis

Several hypotheses have been proposed to explain the mechanisms responsible for maintenance of host-specific gentes in the common cuckoo (Cuculus canorus). Some of them expect that when adult cuckoos return to lay their eggs to their natal site (natal philopatry hypothesis) or habitat in which they were reared (habitat-imprinting hypothesis), there is a higher probability of finding nests of the host species by which they were reared. Since published evidence is ambiguous, we here evaluate the natal philopatry and habitat-imprinting hypotheses using information on habitat homogeneity and cross-continental long-term ringing data. We found no evidence for the natal philopatry hypothesis—instead of returning to their natal site, juvenile cuckoos exhibited longer dispersal movements than adults, and the difference was even larger in comparison with a wide array of cuckoo host species. On the contrary, we found support for the habitat-imprinting hypothesis—juvenile cuckoos followed similar levels of natal habitat homogeneity at 5- and 25-km scale when returning to breed in the next years. Our results suggest that preference for the particular habitat structures may help cuckoos to find appropriate hosts.