Quantifying effects of pollution on biodiversity: a case study of highly diverse molluscan assemblages in the Mediterranean

Structured sampling designs are important in the assessment of environmental impacts of variable ecological systems. Recent developments have provided a useful framework extending existing univariate techniques into a multivariate context. Measures of taxonomic relatedness have also been introduced, which complement existing measures of diversity of assemblages. In this study, the potential effects of sewage discharge on spatial patterns of highly diverse molluscan assemblages in a Mediterranean rocky subtidal habitat were investigated. Nine 20 cm×20 cm quadrats were taken from each of three sites (80 m–100 m apart) within a putatively impacted location near a sewage outfall (I) and at each of two control locations (Cs) by destructive sampling by SCUBA divers at a depth of 3 m–4 m. A total of 5507 specimens of 151 species were collected. The average and the variance in total abundance of molluscs were greater, on average, at I than at Cs. Higher abundances at the sewage outfall were largely driven by greater numbers of juvenile molluscs. The Shannon diversity of molluscs (H′) was significantly lower at I, but no difference among locations was detected for the total number of species (S). In addition, the taxonomic distinctness (Δ*) of molluscs was greater at Cs, although it was more variable at I. Multivariate analyses showed that there was a significant difference in the structure of assemblages at I compared with Cs. The location near the outfall was characterized by greater abundances of several species, including especially the gastropods Pusillina philippi, Bittium latreilli, and Bittium reticulatum. There was also greater variability in the structure of assemblages among sites and among quadrats at control locations compared to those near the outfall. Using a suite of univariate and multivariate measures, including diversity indices, detailed information on taxonomic structure and analyses of variability at different spatial scales, provided useful insights into the effects of sewage impacts on these diverse assemblages. These results also highlighted the importance of analysing measures of variance, as well as mean in considering effects of stress in natural communities.     

Abundance and diversity of the phyllosphere bacterial communities of Mediterranean perennial plants that differ in leaf chemistry

Summary.  We studied the epiphytic bacterial communities of the summer leaves of eight perennial species naturally occurring in a Mediterranean ecosystem. The species differ in essential-oil content (from rich in essential oil to non-producers) and composition, and also in life form (from herbaceous species to tall shrubs). We compared the epiphytic bacterial communities on the basis of (i) their abundance, (ii) their metabolic profile (derived by use of the BIOLOG Ecoplate system) and (iii) richness and diversity of substrates that they use, as a measure of functional diversity. Among all species, the aromatic Melissa officinalis was the most abundantly colonized. The bacterial communities on the leaves of the aromatic Myrtus communis, Calamintha nepeta and Melissa officinalis, and also of Cistus incanus catabolized all 31 substrates offered; those on the evergreen-sclerophyllous species, Arbutus unedo and Quercus coccifera, catabolized only 14 and 17 substrates, respectively. Carbohydrates were consistently used abundantly by all communities, whereas carboxylic acids were most variably used. On average, the group of aromatic plants scored higher regarding bacterial abundance, and richness and diversity of substrates used by the bacterial communities on their leaves; the lowest values for both substrate-use indices were recorded in A. unedo. Bacterial abundance or richness or diversity of substrates used did not vary with leaf oil content. Abundance was positively correlated with both substrate-use indices. Results support claims that the antimicrobial effects of essential oils are not exerted so much under natural conditions as reports based on biassays with pathogens usually show. Although essential oils play a part in the microbial colonization of the phyllosphere, it is not likely that inhibition of phyllosphere bacteria is essential oils’ primary role, at least in the Mediterranean environment.     

Predictability of marine nematode biodiversity

In this paper, we investigated: (1) the predictability of different aspects of biodiversity, (2) the effect of spatial autocorrelation on the predictability and (3) the environmental variables affecting the biodiversity of free-living marine nematodes on the Belgian Continental Shelf. An extensive historical database of free-living marine nematodes was employed to model different aspects of biodiversity: species richness, evenness, and taxonomic diversity. Artificial neural networks (ANNs), often considered as “black boxes”, were applied as a modeling tool. Three methods were used to reveal these “black boxes” and to identify the contributions of each environmental variable to the diversity indices. Since spatial autocorrelation is known to introduce bias in spatial analyses, Moran's I was used to test the spatial dependency of the diversity indices and the residuals of the model. The best predictions were made for evenness. Although species richness was quite accurately predicted as well, the residuals indicated a lack of performance of the model. Pure taxonomic diversity shows high spatial variability and is difficult to model. The biodiversity indices show a strong spatial dependency, opposed to the residuals of the models, indicating that the environmental variables explain the spatial variability of the diversity indices adequately. The most important environmental variables structuring evenness are clay and sand fraction, and the minimum annual total suspended matter. Species richness is also affected by the intensity of sand extraction and the amount of gravel of the sea bed.     

Soleidae macroparasites along the Portuguese coast: latitudinal variation and host–parasite associations

Parasite assemblages are increasingly being used as indicators of their hosts’ biology and ecology, especially for economically important marine species such as the Soleidae. In this study, seven species inhabiting Portuguese coastal waters were examined for external and internal macroparasite infections using standard procedures: Dicologlossa cuneata, Microchirus azevia, Microchirus variegatus, Solea lascaris, Solea senegalensis, Solea solea and Synaptura lusitanica. Despite being closely related, these species present different life history patterns and ecological preferences which were expected to be mirrored by their macroparasite assemblages. The aim of the study was, therefore, to study the variation of these assemblages, within and between host species, along the Portuguese coast in order to evaluate the importance of the hosts’ features and environmental factors in the assemblage compositions. Flatfish were obtained seasonally from commercial fishing vessels operating in three areas (northern, central and southern) along the Portuguese coast. Prevalence and mean abundance were calculated and tested for differences between host sex, areas and seasons. The host specificity index and the importance of the host–parasite relationship were computed based on mean abundance. The total number of parasite individuals, species richness, total prevalence, total mean abundance, diversity and evenness were also calculated. A canonical correspondence analysis (CCA) was performed using prevalence and mean abundance data. A total of 44 macroparasite species were found. No significant differences were observed in prevalence and mean abundance between sexes and sampling seasons but, for three of the parasite species, significant differences were found between areas. The highest values of the parasitological and ecological indices were generally registered in the hosts S. lascaris and S. senegalensis and in the southern area. The CCA using the prevalence data revealed the differentiation of S. lascaris samples, which was mainly related to the total prevalence and to the number of important species of macroparasites. When using mean abundance data, the CCA revealed the differentiation of D. cuneata from the south, S. lascaris from the three areas and S. senegalensis from the south, mainly related to total prevalence and richness. The differences found between infection levels and assemblages’ composition were mainly due to differences in hosts’ diet, namely prey type consumption, given that most macroparasites found were transmitted through the food web. However, environmental factors were also important given that they regulate the distribution of ectoparasites and the availability of prey, and therefore the infections’ pattern. These findings were in agreement with the ones from similar studies performed in other species, revealing the importance of parasites as indicators of their hosts’ ecology.     

Photobiology of corals from Brazil’s near-shore marginal reefs of Abrolhos

Coral communities were examined from highly turbid near-shore marginal reefs of Abrolhos (Brazil) to test a paradigm previously developed from observations in clear water reefs; specifically, that coral photobiological properties follow a highly conserved linear relationship with optical depth (ζ) via preferential ‘non-photochemical’ over ‘photochemical’ dissipation of absorbed light energy. PAM flourometry in situ was used to examine the photobiology of the most dominant coral species throughout the platform surfaces and bases of Abrolhos’ characteristic ‘chapeir?es’ reef framework; however, none of the species consistently adhered to the ‘clear water paradigm’. PAM measurements further demonstrated that species conformed to two different strategies of non-photochemical energy dissipation: transient but relatively rapid for the two closely related endemic species (Mussismilia braziliensis and Mussismilia harttii) as opposed to more persistent for Montastrea cavernosa, Porites astreoides and Siderastrea stellata. Further experiments demonstrated that tolerance to anomalous stress amongst species did not correspond with the non-photochemical energy dissipation strategy present but was consistent with the relative dominance of species within the chapeir?es coral communities.     

Isotopic shifts with size, culture habitat, and enrichment between the diet and tissues of the Japanese scallop Mizuhopecten yessoensis (Jay, 1857)

Use of stable isotope signatures to trace diet patterns in cultured marine bivalves, particularly when changing culture habitat, requires knowledge of the isotopic shift and enrichment between diet and consumer’s tissues. The aim of this study was to determine the patterns of isotope change and the variability of enrichment values (∆δ¹³C and ∆δ¹⁵N) in different tissues (muscle, gonad, digestive gland) of the Japanese scallop (Mizuhopecten yessoensis). It was hypothesized that the isotopic signatures of a consumer’s tissues changed during settlement and that the changes were related to variations in the isotopic signatures of food sources and gut contents. Particular attention was paid to the isotope enrichment between the diet and a consumer’s tissues using isotope analysis of gut content. Muscle δ¹⁵N values decreased significantly 3–5 months post-settlement in a nearshore seabed, concomitant with the ingestion of lower δ¹⁵N food. For juvenile scallops, sinking particles (SP) were considered a more important dietary source than suspended particulate organic matter (SPOM), based on the correspondence between SP and gut contents δ¹³C. Enrichment values (∆δ¹³C and ∆δ¹⁵N) varied with tissue and season. ∆δ¹⁵N was 2.4‰ in muscle, 1.2‰ in gonad, and 0.7‰ in the digestive gland. ∆δ¹³C was 3.2‰ in muscle, 2.3‰ in gonad, and −0.5‰ in the digestive gland. ∆δ¹⁵N was the lowest in summer (0.3‰), and ∆δ¹³C was the highest in autumn (2.8‰). ∆δ¹⁵N values were significantly influenced by age, but not ∆δ¹³C. Patterns of isotope ratios and enrichment values may be related to physiological attributes and differences in diet. This is the first study to demonstrate isotopic shift and enrichment encountered in different tissues of a cultured scallop when changing culture habitat.     

Clostridia dominate 16S rRNA gene libraries prepared from the hindgut of temperate marine herbivorous fishes

Bacterial diversity in the microbial communities of posterior gut sections of three temperate marine herbivorous fish species from New Zealand was characterised using Amplified Ribosomal DNA Restriction Analysis, and 16S rRNA gene amplification and sequencing methods. The fish were collected in 1999–2000 in the Hauraki Gulf, New Zealand (35°54’–36°24’S, 174°48’–175°25’E). The gastrointestinal bacterial communities of Kyphosus sydneyanus (Günther, 1886) (F. Kyphosidae), Odax pullus (Forster in Bloch and Schneider, 1801) (F. Labridae) and Aplodactylus arctidens Richardson, 1839 (F. Aplodactylidae) were dominated by five clades of bacteria, four of which belong to recognized clostridial clusters. The clone libraries of K. sydneyanus and O. pullus contained sequences from most of these clades, but were dominated by members of clostridial clusters XI and XIVa, respectively. The clone library of A. arctidens was dominated by members of clostridial cluster XIVb and an unassigned cluster containing Eubacterium desmolans and Papillibacter cinnaminovorans. The finding that strains of Firmicutes dominated the gastrointestinal microbial communities of all three fish species is consistent with the results of similar studies on terrestrial vertebrate herbivores. This work thus contributes to the view that gastrointestinal symbionts in some marine herbivorous fishes may play a similar role to those in terrestrial vertebrate herbivores studied to date.     

Community responses to UV radiation. II. Effects of solar UVB on field-grown diatom assemblages of the Carribean

The effects of ambient solar UV on community productivity and structure were assessed during primary succession of benthic diatoms on artificial substrate in a coral reef of the Caribbean. Artificial substrates, partially enclosed by UV cutoff filters, were placed at a depth of 60 cm below surface. During the initial colonization stages, the assemblages exposed to the full solar spectrum had a mean productivity 43.4% lower than the assemblages exposed to PAR+UVA only. Some differences in species diversity of assemblages under the different UV treatments were also observed. Sensitive species to UVB exposure were Mastogloia angulata, M. ovata, M. paradoxa, Nitzschia longissima, Plagiogramma staurophorum, Rhopalodia musculus, and Surirella ovata. These UVB effects gradually diminished as succession proceeded; 5 to 6 weeks after the placement of the substrates in the water, no significant differences in productivity were observed between the different treatments, while after 6 weeks of growth, species diversity and evenness were higher, although not statistically significant, in the UVB-exposed assemblages. During the first 2 weeks of growth, the productivity under PAR+UVA was significantly lower than that under PAR only. Received: 12 July 1996 / Accepted: 20 November 1997     

The trophic link between squid and the emperor penguin <Emphasis Type="Italic">Aptenodytes forsteri</Emphasis> at Pointe Géologie,Antarctica

Cephalopod beaks retrieved from stomachs of dead emperor penguin chicks at Pointe Géologie, Terre Adélie, provide information on taxonomic and size composition of the penguin’s squid diet, on the trophic range of the squid species preyed upon and on the fractional trophic impact of the penguin on the whole food web. Emperor penguins prey upon four squid species (Psychroteuthis glacialis, Kondakovia longimana, Gonatus antarcticus, Alluroteuthis antarcticus) and do not take squid larger than 480 mm mantle length. Larger squid live either below the penguin’s diving range or are beyond its handling capacity. Nitrogen stable isotope ratios indicate that squids cover a range of about two trophic levels (2.5–8‰ δ¹⁵N). The impact of the emperor penguin, however, concentrates on the upper part of this range, about 68% of its squid prey being >6‰ δ¹⁵N. The principal components of the emperor’s diet, fish, krill and squid, differ distinctly in average trophic level. Consequently the trophic position of the emperor penguin changes accordingly with diet composition and may differ by almost one trophic level between different emperor penguin colonies.     

Between introgression events and fragmentation, islands are the last refuge for the American crocodile in Caribbean Mexico

Habitat loss and degradation in the Mexican Caribbean, caused by the development of tourism, have decreased the potential nesting area for the American crocodile (Crocodylus acutus) and have fragmented the populations of the Yucatan peninsula. Our study investigated five populations (three continental: North, South, Sian Ka’an, and two insular: Cozumel, Banco Chinchorro) of C. acutus in the Mexican Caribbean using seven different inter simple sequence repeat (ISSR) markers as tools for genetic variability and population differentiation. Three classification methods were tested and compared: distance analysis, self-organizing map, and Bayesian methods, to evaluate the resolution of each method with ISSR markers. The 77 loci selected revealed a high variability between populations (polymorphism from 17% for Sian Ka’an to 75% for Banco Chinchorro) with a total polymorphism of 84% and a global coefficient of gene differentiation (G _ST ) of 0.296, but low values of Nei’s Gene diversity (from 0.065 for Sian Ka’an to 0.233 for Banco Chinchorro). Our results suggest elevated inbreeding in all local populations with higher indices for Banco Chinchorro and lower indices for Sian Ka’an. Three independent classification methods gave similar results, and suggested that most continental individuals are admixtures, with different levels of introgression, with the sympatric species Crocodylus moreletii. We propose that the islands/atolls remain the sole areas with genetically “pure” American crocodiles and we discuss these results for future conservation of this endangered crocodile species.     

Spatio-temporal variations of biomass and abundance in bathyal non-crustacean megafauna in the Catalan Sea (North-western Mediterranean)

The spatio-temporal variations in diversity, biomass and abundance of bathyal invertebrates (excluding decapod crustaceans, which have been analysed elsewhere) from the North-western Mediterranean margin are described. The upper canyon (∼450 m), middle slope (∼650 m) and lower slope (∼1,200 m) habitats were investigated throughout the year. The first two sites are visited daily by a specialised commercial fisheries’ fleet, while the deeper site has not been impacted by fishing activities. A total of 140 species from 12 phyla were collected from the 3 study areas. Of these, the Mollusca, Echinodermata, Polychaeta and Cnidaria were the most speciose groups. The patterns of species diversity (H′) and evenness (E) were similar in time and space. The upper canyon and middle-slope sites were dominated by echinoderms and molluscs, while the lower-slope site was dominated by cnidarians and sponges. Multifactorial ANOVA showed significant spatio-temporal differences in the biomass and/or abundance only in echinoderms, molluscs, cnidarians and polychaetes. The faunal differences observed were explained by habitat type, but not by season. The role of submarine canyons and commercial fishing on shaping the diversity and biomass of bathyal Mediterranean invertebrates is discussed. Luis Dantart: Deceased March 2005     

Predation on Euphausia pacifica by demersal fishes: predation impact and influence of physical variability

The importance of Euphausia pacifica Hansen to the demersal fish community off Sendai Bay, northern Japan, was studied based on a total of 256 trawl samples collected during May, October and November, from 1989 to 1992. The samples were classified into 16 assemblages according to year, month and depth. The importance of E. pacifica to the total diet of each of the assemblages was measured using an index considering both fish diet and species composition. A total of 24 fish species out of 87 were found to ingest E. pacifica. Of these, Gadus macrocephaus and Theragra chalcogramma had the highest predation impact due to their dominance in the fish assemblages and the high proportion of E. pacifica in their diets. The contribution of E. pacifica to the total diet of the fish assemblage was highest in the shallow (≤300 m) regions during May, accounting for an average of 38.5% for the 4 years. However, during May 1990, when the warm Kuroshio Extension prevailed, the contribution was higher in the deep (>300 m; 22.6%) region, reflecting active and/or passive movements of E. pacifica. The average predation impact was maximal in the May/shallow assemblage (mean ± SE; 4.6 ± 1.4 kg wet wt km² d⁻¹) and was minimal in the November/shallow assemblage (0.4 ± 0.3). Annual estimates of consumption by demersal fish fishes ranged from 43 to 128 metric tons, representing 15 to 64% of the annual commercial catch of E. pacifica by local fisheries. It is therefore suggested that the fisheries on E. pacifica have the potential to considerably impact the demersal fish assemblages. Received: 3 December 1997 / Accepted: 10 June 1998     

Sponge-specific bacterial symbionts in the Caribbean sponge, Chondrilla nucula (Demospongiae, Chondrosida)

Marine sponges harbor dense and highly diverse bacterial communities, and some percentage of the microflora appears to be specialized for the sponge habitat. Bacterial diversity was examined in Chondrilla nucula Schmidt to test the hypothesis that some subset of sponge symbiont communities is highly similar regardless of the species of host or habitat requirements of the host. C. nucula was collected from a mangrove channel on Lower Matcumbe Key in the Florida Keys (25°53′N; 80°42′W) in August 1999. Domain-specific universal bacterial primers were used to amplify the 16S rDNA gene from genomic DNA that had been extracted from sponges and the surrounding water. An RFLP technique was used to assess diversity of sponge-associated and environmental bacterial communities. The clone library from C. nucula contained 21 operational taxonomic units (OTUs). None of the 53 OTUs from adjacent water samples were found in the C. nucula library indicating that a distinct community was present in the sponge. Sequence analysis indicated that C. nucula harbors a microbial community as diverse as the microbes from other sponges in different habitats around the world. Phylogenetic analysis placed several C. nucula clones in clades dominated by bacteria that appear to be sponge specialists (e.g., Acidobacteria, Bacteroidetes, and Cyanobacteria). Proportional representation of major bacterial taxonomic groups represented in symbiont communities was compared as a function of geographic location of sponge hosts. This study supports the hypothesis that sponges from different oceans existing in dissimilar habitats harbor closely related bacteria that are distinct from other bacterial lineages and appear specialized for residing within sponges.     

A paradox of the ciliates? High ciliate diversity in a resource-poor environment

Ecological theory predicts that low productivity systems should have low biodiversity. However, despite the oligotrophic status of the Gulf of Aqaba (Northern Red Sea) ciliate species richness was unexpectedly high. In addition, phytoplankton, as main ciliate prey, was made up by only few genera, indicating a significant niche overlap among the grazers. Up to 97% of the ciliates were from the same taxonomic group and of the same size range, implying very similar food niches. Ciliate diversity was highest at times of lowest chlorophyll concentrations, during the period of stable abiotic conditions, but relatively high genetic diversity within the ciliate prey, notably among the cyanobacteria Synechococcus and Prochlorococcus. In the absence of disturbance and with little predation pressure, the alternate explanations for the observed ciliate diversity are either very fine niche partitioning by the ciliates, or their competitive equivalence resulting in a random assortment of species immigrating from a larger metacommunity, in accordance with Hubbell’s, (The unified neutral theory of biodiversity and biogeography. Princeton University Press, Princeton, 2001) neutral model. While the use of species abundance distributions (SAD’s) is far from definitive, the theoretical SAD’s that best fit the Gulf of Aqaba ciliate data was most often not that expected by neutral theory.     

Temporal variation of Tubularia indivisa (Cnidaria, Tubulariidae) and associated epizoites on artificial habitat communities in the North Sea

We have analyzed the composition, diversity, density and biomass of a temporal series of samples taken in a Tubularia indivisa community, which dominates a shipwreck in the North Sea waters (N 51°23′,730–E 02°29′,790, 17 nautical miles from the coast, 30 m depth). This shipwreck has structures emerging up to 8 m above the seabed. Water temperature ranged from 4.2°C in March to 20.3°C in August. Salinity showed few variations around 33.9 psu. Bottom tidal currents followed a semi-diurnal cycle and were preferentially NE oriented with 84% of them in the range 0.25–0.75 m s⁻¹. The mean value for total suspended matter was 6.2 mg l⁻¹ with large variations on a monthly scale. The species richness of samples varied from 15 in October to 42 in August with a mean value of 33 species. Diversity indices were higher during autumn and winter because of the strong dominance of a few crustacean species during the warmer months. The total density of individuals ranged from 6,500 ind m⁻² in October to 445,800 ind m⁻² in July, most of these individuals belonging to the amphipod species Jassa herdmani. The biomass of the T. indivisa community varied from 9 g AFDW m⁻² in October to 1,106 g AFDW m⁻² in July, with T. indivisa itself constituting between 59 and 82% of the total biomass. The biomass of T. indivisa was positively correlated with species richness and with the density of 23% of the species identified on this community, suggesting that T. indivisa plays an important structural role in this habitat. This was further confirmed by the number of species associated with T. indivisa which was generally superior to 55% of the sorted species. Multivariate analysis indicated strong differences between spring/summer−autumn/winter assemblages mostly but not solely due to the abundance patterns of species. These findings support the conclusion that shipwrecks in Belgian waters allow the development of assemblages dominated by a high biomass of T. indivisa which in turn provides shelter for high densities and biomass of epizoites. These assemblages will further show large monthly variations in densities and composition due to large variation in T. indivisa biomass under an apparent repetitive annual cycle. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Spatial and temporal variability of fish assemblage in Kuwait Bay

Spatial and temporal variability of fish assemblages in Kuwait Bay was studied using the catch data acquired through monthly otter trawl sampling from June 2002 through July 2004. We compared species composition using relative species density and cluster analysis among different seasons (summer’02, summer’03, winter’03, and spring’04) and areas (center, south 1, south 2, west, north and east). Significant differences in total species, species richness (SR), diversity (H′), and fish abundance were tested among (between) different seasons and areas using analysis of variance (ANOVA) and Duncan’s test. The results showed that the catches consisted of 80 species representing 41 families with Leiognathus bindus and Plicofollis tenuispinis dominating numerically. Spatially, species composition fell into three main areas: (1) east; (2) south 1 and south 2; and (3) north, center, and west. Temporally, winter’03 and spring’04 were closely related, but we found low similarity between the two summers and even lower similarity between the summers and other seasons, indicating high intra-annual variation. L. bindus was abundant in most of the areas except south 1, south 2 and the east area. Spatial changes of abundance of the two dominant species showed a complementary trend. Where L. bindus was numerically high, P. tenuispinis was low, and vice versa. Significant lower total species number and SR were observed in south 2 than all the other areas except the east, and significant higher fish abundance occurred in the summers than during the other seasons. Overall, it was concluded that variation in fish assemblages was area dependent, while fish abundance was mainly influenced by seasonal changes.     

Invasion patterns inferred from cytochrome oxidase I sequences in three bryozoans, Bugula neritina, Watersipora subtorquata, and Watersipora arcuata

Nucleotide variation in cytochrome c oxidase subunit I (COI) was used to examine population structure in three invasive bryozoans: Bugula neritina (Linnaeus, 1758), Watersipora subtorquata (d’Orbigny, 1852), and W. arcuata (Banta, 1969). These species are found on ship hulls and have a short (≤2 days) larval phase. Samples were collected from 1998–2001 at multiple sites in Australia, and in Hong Kong, New Zealand, Hawaii, California, Curaçao, and England. B. neritina is known to include three cryptic species, including species Type S (Davidson and Haygood in Biol Bull 196:273–280, 1999) which occurs on the east and west coasts of the USA. One haplotype recorded previously in the USA, S1, was found to be widespread, occurring throughout Australia and in Hong Kong, Curaçao, Hawaii, and England. W. subtorquata, a Caribbean–Atlantic species which has invaded southern Australia, New Zealand, and California, had low nucleotide diversity in these areas (π=0.0016±0.0014), consisting of three haplotypes connected by one or two nucleotide mutations. W. arcuata, an Eastern-Pacific native, had comparatively high diversity (π=0.0221±0.0115) in introduced populations from Australia and Hawaii. In each species, identical haplotypes were identified on separate coastlines providing evidence of widespread, rather than genetically independent, introductions. The major contrast in nucleotide diversity suggests that different propagule-source models explain introductions.     

Morphological and fluorescence analysis of the Montastraea annularis species complex in Florida

The taxonomic status of the Montastraea annularis species complex is unclear. Much evidence has been accumulated to support the separation into 3 species, but the presence of intermediate morphotypes and the apparent lack of effective reproductive barriers in some areas are yet unexplained. Several authors have made a call for the introduction of new traits that can be used to resolve differences among closely related coral species. We collected skeletal and tissue samples from corals within the M. annularis species complex (15 each of M. annularis, M. faveolata, and M. franksi) and 10 morphological intermediates from several reefs in the Florida Keys. Multivariate analysis of corallite skeletal measurements supported the separation of the species complex into three taxa. We detected two main fluorescence emission peaks at 480 nm (turquoise) and 515 nm (green) that were not distributed equally among the three species. Every M. annularis colony had a major turquoise fluorescence peak. Some had a weak green secondary fluorescence peak. Colonies of M. faveolata and M. franksi had either the green or turquoise fluorescence peak, but at significantly different frequencies. The intermediate morphotypes proved to be highly heterogeneous with respect to both micromorphology and fluorescence, and their nature could not be fully explained. We were not able to separate the three species using fluorescence characters alone, however this new trait does increase our understanding of the taxonomic structure within the M. annularis species complex. Received: 21 January 2000 / Accepted: 1 September 2000     

Linking abundance and diversity of sponge-associated microbial communities to metabolic differences in host sponges

Many sponge species contain large and diverse communities of microorganisms. Some of these microbes are suggested to be in a mutualistic interaction with their host sponges, but there is little evidence to support these hypotheses. Stable nitrogen isotope ratios of sponges in the Key Largo, Florida (USA) area grouped sponges into species with relatively low δ¹⁵N ratios and species with relatively high δ¹⁵N ratios. Using samples collected in June 2002 from Three Sisters Reef and Conch Reef in the Key Largo, Florida area, transmission electron microscopy (TEM) and denaturing gradient gel electrophoresis were performed on tissues of the sponges Ircinia felix and Aplysina cauliformis, which are in the low δ¹⁵N group, and on tissue of the sponge Niphates erecta, which is in the high δ¹⁵N group. Results showed that I. felix and A. cauliformis have large and diverse microbial communities, while N. erecta has a low biomass of one bacterial strain. As the low δ¹⁵N ratios indicated a microbial input of nitrogen, these results suggested that I. felix and A. cauliformis were receiving nitrogen from their associated microbial community, while N. erecta was obtaining nitrogen solely from external sources. Sequence analysis of the microbial communities showed a diversity of metabolic capabilities among the microbes of the low δ¹⁵N group, which are lacking in the high δ¹⁵N group, further supporting metabolic differences between the two groups. This research provides support for hypotheses of mutualisms between sponges and their associated microbial communities.     

Spatial structure of communities on dead pen shells (<Emphasis Type="Italic">Atrina rigida</Emphasis>) in sea grass beds

Delimiting communities in marine habitats is difficult because co-occurring species often have different life histories and the life stages experience the environment at different spatial scales. The habitat of a particular community is embedded within a larger habitat or ecosystem with many species shared between the focal community and the larger system. Pen shells (Atrina rigida) are large bivalves that, once the mollusk dies, provide shelter for motile species and hard substrate for settling larval invertebrates and egg-laying fishes. In St. Joseph’s Bay, Florida (29°45′N, 85°15′W), pen shells are the most abundant source of hard substrate, especially inside sea grass (Thalassia testudinum) beds, where they reach densities of 0.1–4.0 m⁻². This study, which was conducted from May to August 2005, measured the overlap in species densities between dead pen shells and the surrounding sea grass communities at eight sites to determine the discreteness of the pen shell communities. Of the 70-epibenthic taxa recorded, 66% were found on the pen shells but not in the surrounding sea grass habitat. Community structure, which varied among shells within sites and among the eight sites, could be related to sea grass characteristics such as blade density and length either directly (e.g., inhabitants of pen shells directly benefit from the surrounding sea grass) or indirectly (e.g., pen shells and sea grass both benefit from similar factors such as current and nutrients). Pen shells were randomly distributed at several spatial scales within the 15 × 15 m sites as were many motile species. Two exceptions were the shrimp, Palaemon floridanus and the amphipod, Dulichella appendiculata, whose distributions were clumped. Most of the sessile species had clumped distributions, tending to be very abundant when they were present. These pen shell communities provide an opportunity for experimental studies of factors affecting species diversity on small, discrete, naturally occurring habitats. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.