Conditional outcomes of facilitation by a habitat-modifying subtidal bivalve

Facilitation by habitat modifiers is common in ecological communities, but the potential for temporal and spatial variations in environmental conditions to modify the outcome of these interactions and influence the strength of feedbacks is poorly understood. Suspension-feeding bivalves are important habitat modifiers that can facilitate surrounding communities by providing refuge from predation and changing boundary flows and through the production of organically enriched biodeposits. However, numerous studies have highlighted the problem of finding generalizable patterns. We tested the strength and generality of the relationship between the large suspension-feeding bivalve Atrina zelandica and surrounding macrofauna and hypothesized that facilitation by Atrina is conditional and modulated by site-specific suspended sediment concentration (SSC), which influences the quantity and quality of biodeposit production. We found temporally consistent patterns of higher rates of biodeposition and increased abundance and species richness in close proximity to Atrina under low SSC conditions. Facilitation strength decreased with increasing SSC, suggesting that the facilitation effect of Atrina is reduced and reversed along this environmental stress gradient.     

Interaction between flow, transport and vegetation spatial structure

This paper summarizes recent advances in vegetation hydrodynamics and uses the new concepts to explore not only how vegetation impacts flow and transport, but also how flow feedbacks can influence vegetation spatial structure. Sparse and dense submerged canopies are defined based on the relative contribution of turbulent stress and canopy drag to the momentum balance. In sparse canopies turbulent stress remains elevated within the canopy and suspended sediment concentration is comparable to that in unvegetated regions. In dense canopies turbulent stress is reduced by canopy drag and suspended sediment concentration is also reduced. Further, for dense canopies, the length-scale of turbulence penetration into the canopy, δ _e , is shown to predict both the roughness height and the displacement height of the overflow profile. In a second case study, the relation between flow speed and spatial structure of a seagrass meadow gives insight into the stability of different spatial structures, defined by the area fraction covered by vegetation. In the last case study, a momentum balance suggests that in natural channels the total resistance is set predominantly by the area fraction occupied by vegetation, called the blockage factor, with little direct dependence on the specific canopy morphology.     

3D numerical modelling of turbidity currents

During floods, the density of river water usually increases due to a subsequent increase in the concentration of the suspended sediment that the river carries, causing the river to plunge underneath the free surface of a receiving water basin and form a turbidity current that continues to flow along the bottom. The study and understanding of such complex phenomena is of great importance, as they constitute one of the major mechanisms for suspended sediment transport from rivers into oceans, lakes or reservoirs. Unlike most of the previous numerical investigations on turbidity currents, in this paper, a 3D numerical model that simulates the dynamics and flow structure of turbidity currents, through a multiphase flow approach is proposed, using the commercial CFD code FLUENT. A series of numerical simulations that reproduce particular published laboratory flows are presented. The detailed qualitative and quantitative comparison of numerical with laboratory results indicates that apart from the global flow structure, the proposed numerical approach efficiently predicts various important aspects of turbidity current flows, such as the effect of suspended sediment mixture composition in the temporal and spatial evolution of the simulated currents, the interaction of turbidity currents with loose sediment bottom layers and the formation of internal hydraulic jumps. Furthermore, various extreme cases among the numerical runs considered are further analyzed, in order to identify the importance of various controlling flow parameters.     

Ecological effects of dumping of dredged sediments; options for management

Dredging and dumping of dredged sediments in estuarine and coastal waters may lead to increased turbidity and enhanced sediment deposition at dump sites. This mainly affects primary production by phytoplankton, performance of visual predators (e.g. fish, birds), and growth and survival of benthic organisms. This paper combines a compilation of literature information and results of additional experimental studies on the effect of enhanced concentrations of suspended matter (SPM) on growth of bivalve molluscs, and on survival of macro- and meiozoobenthos after dumping of dredged sediments. Furthermore, it focuses on non-toxic dredged sediments only. Release of nutrients from dredged sediments did, so far, hardly influence estuarine phytoplankton production. Increased turbidity may affect dab as well as prey location by sandwich terns. Enhanced SPM-concentrations are unfavourable for young herring and smelt. Growth of filter-feeding bivalves may be impaired, especially at SPM-concentrations >250 mg/l. Estuarine nematodes can survive burial by 10 cm of dumped dredged sediment provided that its physical characteristics are similar to those of the original sediment. Sessile benthos organisms such as mussels and oysters can cope with sediment deposition of only 1–2 cm. Other macrozoobenthos can survive sediment deposition of 20–30 cm. Recovery of benthos at a dump site will occur if the interval between successive dumpings is sufficiently long. Options for management of dumping of dredged sediments are described, relating to different locations of dump sites in estuarine and coastal waters, to different seasons, and to the actual use (area and frequency) of dump sites.     

2D numerical analysis of the influence of near-bank vegetation patches on the bed morphological adjustment

This paper investigates the influence of near-bank vegetation patches on the bed morphological adjustment in open channel flow systems. The 2D depth-averaged hydro-morphological model is adopted for this investigation, which is first validated by laboratory experimental data measured in an open channel with a single near-bank vegetation patch. The validated model is then applied for extensive numerical simulations, with the aim of conducting a systematic analysis of the influence of different geometric controlling parameters on the bed morphological evolution. The controlling parameters taken into account for numerical analysis include the angle of repose value (RAV) of sediment, vegetation density (VD), patch length (PL) and patch width (PW). The numerical results and analysis show that: (1) the RAV of sediment with slope-failure parametrization only influences the shape of the transverse bed topography in the junction region; (2) increase in VD, PL and PW that substantially enhances flow blockage effect encourages the growth of the pool adjacent to the patch in three dimensions; (3) increase in VD, PL and PW produces analogous retrogressive erosion (erosion toward the upstream) in the pool region, presumably due to the increase in flow resistance. Additional numerical experiments suggest that the staggered-order distribution of multiple patches might be an optimal choice for channel restoration and conservation since pools and riffles with larger scales can be produced.

     

Effects of suspended sediments on egg production of the calanoid copepod Acartia tonsa

The estuarine copepod Acartia tonsa was collected on several occasions between 4 April and 14 August 1985 from Terrebonne Bay, Louisiana (29°08N; 90°36W) and the effects in its diet of suspended sediments, collected from the same area, were measured at five different concentrations of sediment (100 to 1 000 ppm) and six phytoplankton concentrations (500 to 13 000 cells ml^-1 Thalassiosira weissflogii). Egg production rate was used as an index of diet quality. At low phytoplankton concentrations (500 cells ml^-1), and at intermediate phytoplankton concentrations (2 000 cells ml^-1) for previously starved copepods, egg production was reduced by up to 40% at a sediment concentration of 250 ppm and further reduced at higher sediment concentrations. At higher food concentrations (4 000 to 13 000 cells ml^-1), suspended sediment had no effect on egg production rates at sediment concentrations up to 500 ppm. Rates were reduced only at the highest sediment concentration of 1 000 ppm. Under most natural conditions, suspended sediment would not significantly affect egg production rates in A. tonsa.     

Coupling biochemical and biophysical processes at the leaf level: an equilibrium photosynthesis model for leaves of C3 plants

The paper presents a generic computer model for estimating short-term steady-state fluxes of CO₂, water vapor, and heat from broad leaves and needle-leaved coniferous shoots of C₃ plant species. The model explicitly couples all major processes and feedbacks known to impact leaf biochemistry and biophysics including biochemical reactions, stomatal function, and leaf-boundary layer heat- and mass-transport mechanisms. The ability of the model to successfully predict measured photosynthesis and stomatal-conductance data as well as to simulate a variety of observed leaf responses is demonstrated. A model application investigating physiological and environmental regulation of leaf water-use efficiency (WUE) under steady-state conditions is discussed. Simulation results suggest that leaf physiology has a significant control over the environmental sensitivity of leaf WUE. The implementation of a highly efficient solution technique allows the model to be directly incorporated into plant-canopy and terrestrial ecosystem models.     

Bioaccumulation of heavy metals by bivalves from Lim Fjord (North Adriatic Sea)

Trace metal concentrations (Zn, Cd, Pb and Cu) were studied in two different bivalve species of the same age, the mussel Mytilus galloprovincialis, Lmk., and the oyster Ostrea edulis, Linnaeus, which had been grown in the water of Lim Fjord, North West Yugoslavia (Peninsula Istria), i.e. under the same physicochemical conditions. The study offers a realistic view on the metal accumulation ability of oysters and mussels. The distribution of trace metals over the different organs and the edible parts of the mussels and oysters, collected in June 1979, was determined and is discussed in detail. The results are supported by the determination of the trace metal levels in the dissolved state and in the suspended material in the ambient sea water of the bivalves. Concentration factors for zinc, cadmium, lead and copper in the mussels of: 95 000, 9 100, 1 500 and 4 000; and in the oysters of: 95 500, 30 400, 3 400 and 64 500 were found, respectively. The values were evaluated comparing the metal concentration in the bivalve soft part and the dissolved trace metal levels in the adjacent water.     

A model diagnostic study of age of river-borne sediment transport in the tidal York River Estuary

As nutrients and organic matters are transported preferentially in an adsorbed state and tend to bind to the sediments, sediment transport plays an important role on eutrophication processes in the estuaries. The timescale of sediment transport is of significance for studying the retention of pollutants and eutrophication processes in the estuaries. Unlike transport of dissolved substances that is mainly controlled by advection and diffusion processes, the sediment transport is significantly affected by the intermittent settling and resuspension processes. A three-dimensional model with suspended sediment transport was utilized to investigate the transport timescale of river-borne sediment in the tidal York River Estuary. The results indicate that river discharge dominantly determines the age of river-borne sediment in the estuary. High river discharge results in a low sediment age compared to that under mean flow. The intermittent effects of settling and resuspension events greatly affect the river-borne sediment age. Both settling velocity and critical shear stress are shown to be key parameters in determining the sediment transport timescale. The sediment age decreases as settling velocity and/or critical shear stress decrease, while it increases with the increase of settling velocity that prevents the sediment to be transported out of the estuary.     

Froude scaling limitations in modeling of turbidity currents

The scaling problem associated with the modeling of turbidity currents has been recognized but is yet to be explored systematically. This paper presents an analysis of the dimensionless governing equations of turbidity currents to investigate the scale effect. Three types of flow conditions are considered: (i) conservative density current; (ii) purely depositional turbidity current; and (iii) mixed erosional/depositional turbidity current. Two controlling dimensionless numbers, the Froude number and the Reynolds number, appear in the non-dimensional governing equations. When densimetric Froude similarity is satisfied, the analysis shows that the results would be scale-invariant for conservative density current under the rough turbulent condition. In the case of purely depositional flows, truly scale-invariant results cannot be obtained, as the Reynolds-mediated scale effects appear in the bottom boundary conditions of the flow velocity and sediment fall velocity. However, the scale effect would be relatively modest. The Reynolds effect becomes more significant for erosional or mixed erosional/depositional turbidity currents as Reynolds-mediated scale effects also appear in the sediment entrainment relation. Numerical simulations have been conducted at three different scales by considering densimetric Froude scaling alone as well as combined densimetric Froude and Reynolds similarity. Simulation results confirm that although the scaling of densimetric Froude number alone can produce scale-invariable results for conservative density currents, variations occur in the case of turbidity currents. The results become scale invariant when densimetric Froude and Reynolds similarities are satisfied simultaneously.     

Simulation-based optimization of in-stream structures design: rock vanes

We employ a three-dimensional coupled hydro-morphodynamic model, the Virtual Flow Simulator (VFS-Geophysics) in its Unsteady Reynolds Averaged Navier–Stokes mode closed with \(k-\omega\) model, to simulate the turbulent flow and sediment transport in large-scale sand and gravel bed waterways under prototype and live-bed conditions. The simulation results are used to carry out systematic numerical experiments to develop design guidelines for rock vane structures. The numerical model is based on the Curvilinear Immersed Boundary approach to simulate flow and sediment transport processes in arbitrarily complex rivers with embedded rock structures. Three validation test cases are conducted to examine the capability of the model in capturing turbulent flow and sediment transport in channels with mobile-bed. Transport of sediment materials is handled using the Exner equation coupled with a transport equation for suspended load. Two representative meandering rivers, with gravel and sand beds, respectively, are selected to serve as the virtual test-bed for developing design guidelines for rock vane structures. The characteristics of these rivers are selected based on available field data. Initially guided by existing design guidelines, we consider numerous arrangements of rock vane structures computationally to identify optimal structure design and placement characteristics for a given river system.     

Feeding current characteristics of three morphologically different bivalve suspension feeders, Crassostrea gigas, Mytilus edulis and Cerastoderma edule, in relation to food competition

Introduced Pacific oysters (Crassostrea gigas) have shown rapid expansion in the Oosterschelde estuary, while stocks of native bivalves declined slightly or remained stable. This indicates that they might have an advantage over native bivalve filter feeders. Hence, at the scale of individual bivalves, we studied whether this advantage occurs in optimizing food intake over native bivalves. We investigated feeding current characteristics, in which potential differences may ultimately lead to a differential food intake. We compared feeding currents of the invasive epibenthic non-siphonate Pacific oyster to those of two native bivalve suspension feeders: the epibenthic siphonate blue mussel Mytilus edulis and the endobenthic siphonate common cockle Cerastoderma edule. Inhalant flow fields were studied empirically using digital particle image velocimetry and particle tracking velocimetry. Exhalant jet speeds were modelled for a range of exhalant-aperture cross-sectional areas as determined in the laboratory and a range of filtration rates derived from literature. Significant differences were found in inhalant and exhalant current velocities and properties of the inhalant flow field (acceleration and distance of influence). At comparable body weight, inhalant current velocities were lower in C. gigas than in the other species. Modelled exhalant jets were higher in C. gigas, but oriented horizontally instead of vertically as in the other species. Despite these significant differences and apparent morphological differences between the three species, absolute differences in feeding current characteristics were small and are not expected to lead to significant differences in feeding efficiency.     

A Constant Erosion Rate Model for Fine Sediment in the York River,Virginia

Results of field experiments using the Virginia Institute of Marine Science' Sea Carousel and tripod system reveal a highly dynamic sediment activity at the Clay Bank site in the York River. At the water-sediment interface, the critical bed shear stress for sediment erosion varied between 0.026 Pa and 0.1 Pa. For the well consolidated sediment below the interface, the critical bed shear stress increased significantly, to more than 0.6 Pa. The seasonal variation of erosion rate for the surficial sediment is significant. For the well consolidated sediment below the surficial sediment, however, the seasonal variation diminished and erosion rate approached a constant. Experimental results from the Carousel deployments imply that the erosion process for quasi-steady tidal flows is always near equilibrium. For this reason, a constant rate erosion model is proposed for the time during tidal acceleration phases. For other times, the erosion rate would be zero. The measured suspended sediment concentration at 10 cm above bed from the VIMS tripod system also Supports this model.     

Sediment processes and flow reversal in the undular tidal bore of the Garonne River (France)

A tidal bore is a series of waves propagating upstream as the tidal flow turns to rising, and the bore front corresponds to the leading edge of the tidal wave in a funnel shaped estuarine zone with macro-tidal conditions. Some field observations were conducted in the tidal bore of the Garonne River on 7 June 2012 in the Arcins channel, a few weeks after a major flood. The tidal bore was a flat undular bore with a Froude number close to unity: $\hbox {Fr}_{1} = 1.02$ and 1.19 (morning and afternoon respectively). A key feature of the study was the simultaneous recording of the water elevation, instantaneous velocity components and suspended sediment concentration (SSC) estimates, together with a detailed characterisation of the sediment bed materials. The sediment was some silty material ( $\hbox {d}_{50} \approx 13~\upmu \hbox {m}$ ) which exhibited some non-Newtonion thixotropic behaviour. The velocity and SSC estimate were recorded simultaneously at high frequency, enabling a quantitative estimate of the suspended sediment flux at the end of the ebb tide and during the early flood tide. The net sediment flux per unit area was directed upstream after the bore, and its magnitude was much larger than that at end of ebb tide. The field observations highlighted a number of unusual features on the morning of 7 June 2012. These included (a) a slight rise in water elevation starting about 70 s prior to the front, (b) a delayed flow reversal about 50 s after the bore front, (c) some large fluctuations in suspended sediment concentration (SSC) about 100 s after the bore front and (d) a transient water elevation lowering about 10 min after the bore front passage. The measurements of water temperature and salinity showed nearly identical results before and after the tidal bore, with no evidence of saline and thermal front during the study.     

基于分形理论及信息熵的广州边缘区绿地空间结构分析——以番禺区为例

以信息熵和分形理论为指导,在遥感和GIS技术支持下构建绿地空间结构熵模型,以番禺区为例对广州市边缘区绿地结构在空间上的分异进行分析,结果表明：III梯度区得益于良好的水资源及地形等自然条件,斑块平均面积最大、边缘密度最低、斑块结合度指数最高,生境破碎化程度最小,熵值最高,为-12524,稳定性最好;II梯度区熵值最低,为-62553,主要由于受游移多变且支流众多的水系胁迫导致绿地空间结构被切割破碎,稳定性最差;而I梯度区熵值为-36819,处于II、III梯度区之间,但由于距城市最近受人为干扰最强烈,连通性最差、生境破碎化程度最高,其稳定性很大程度取决于人为干扰活动的剧烈程度和政府行为对用地结构的调控。     

Turbulence suppression by suspended sediment within a geophysical flow

Experiments are performed in a mixing box to evaluate the effect of suspended sediment on turbulence generated by an oscillating grid. Quartz-density sand of varying sizes and concentrations is used, and particle image velocimetry is employed to quantify only the fluid phase. Results show that (1) while a relatively large secondary flow field is present in the box, turbulence is a maximum near the grid and it decreases systematically toward the water surface; (2) relatively high concentrations of fine sediment can markedly alter this secondary flow field and significantly decrease both the time-mean and turbulent kinetic energy within the flow, yet these same sediment concentrations have little effect on the integral time and length scales derived for each velocity component; and (3) the overall turbulence suppression observed can be related to the transfer of energy from the fluid to the sediment and the maintenance of a suspended sediment load rather than commonly employed turbulence modulation criteria. These experimental data demonstrate unequivocally that the presence of a suspended sediment load can significantly reduce overall turbulent kinetic energy, and these results should be applicable to a range of sediment-laden geophysical flows.     

Parasitism as a determinant of community structure on intertidal flats

The burrowing and movement ability of the New Zealand cockle Austrovenus stutchburyi is reduced when infected by echinostome trematodes. Previous experimental evidence from a single site suggests that this parasite-induced behavioural change of a key bivalve can affect the structure of the surrounding benthic community. By using multiple regression analyses on data collected from 17 intertidal flats, we here show that cockle parasitism is associated with macrozoobenthic community structure on a larger spatial scale. Regressions were performed for animal abundance, biomass, species diversity and species richness separately, entering cockle parasitism (infection intensity), presence/absence of ghost shrimps (Callianassa filholi), cockle density, primary producer abundance and organic content, particle size, sorting coefficient and gravel content of the substrate as predictors. Next to ghost shrimps, cockle parasitism was the best predictor of animal abundance by affecting (mainly positively) 8 of the 49 most widespread species significantly. Cockle parasitism was also associated with the biomass of anthozoans (positively), nemerteans (negatively) and bivalves (positively), whereas overall animal biomass was positively related to the sorting coefficient of the substrate. Species diversity was positively associated with cockle parasitism and gravel content of the substrate. Species richness was significantly associated with cockle parasitism (positively), ghost shrimps (negatively) and abundance of primary producers (positively) in combination. The impact of cockle parasitism on benthic community structure is believed governed directly or indirectly by (1) reduced sediment disturbance, (2) increased surface structural complexity and (3) availability of larval trematodes as an additional food source.     

Decoupling of component and ensemble density feedbacks in birds and mammals

A component density feedback represents the effect of change in population size on single demographic rates, whereas an ensemble density feedback captures that effect on the overall growth rate of a population. Given that a population's growth rate is a synthesis of the interplay of all demographic rates operating in a population, we test the hypothesis that the strength of ensemble density feedback must augment with increasing strength of component density feedback, using long-term censuses of population size, fertility, and survival rates of 109 bird and mammal populations (97 species). We found that compensatory and depensatory component feedbacks were common (each detected in approximately 50% of the demographic rates). However, component feedback strength only explained <10% of the variation in ensemble feedback strength. To explain why, we illustrate the different sources of decoupling between component and ensemble feedbacks. We argue that the management of anthropogenic impacts on populations using component feedbacks alone is ill-advised, just as managing on the basis of ensemble feedbacks without a mechanistic understanding of the contributions made by its components and environmental variability can lead to suboptimal decisions.     

河蚬在我国沉积物毒性评价与鉴定中的应用研究

河蚬作为原产并广泛分布于我国及东南亚的双壳类淡水软体动物,是我国众多水域的底栖优势种。河蚬对水体污染物具有较强累积能力,已成功用于水体沉积物生物富集及生物毒性效应研究。但应用于沉积物毒性鉴别评估(TIE)研究整体上仍处于起步阶段,尚未形成一套标准指标测定方法和技术体系。为此,本研究在调查底栖生物在我国沉积物毒性研究的基础上,以河蚬为主要研究对象,探讨其在我国生态分布等生物学背景,系统分析其对重金属和有机污染物的生物富集特征以及相关生物毒性效应方面的研究进展,以期为河蚬作为我国特色的沉积物毒性鉴别评估(TIE)受试生物提供参考依据。     

Estimation of total sediment load concentration obtained by experimental study using artificial neural networks

Estimation of sediment concentration in rivers is very important for water resources projects planning and managements. The sediment concentration is generally determined from the direct measurement of sediment concentration of river or from sediment transport equations. Direct measurement is very expensive and cannot be conducted for all river gauge stations. However, sediment transport equations do not agree with each other and require many detailed data on the flow and sediment characteristics. The main purpose of the study is to establish an effective model which includes nonlinear relations between dependent (total sediment load concentration) and independent (bed slope, flow discharge, and sediment particle size) variables. In the present study, by performing 60 experiments for various independent data, dependent variables were obtained, because of the complexity of the phenomena, as a soft computing method artificial neural networks (ANNs) which is the powerful tool for input–output mapping is used. However, ANN model was compared with total sediment transport equations. The results show that ANN model is found to be significantly superior to total sediment transport equations.