Identification of a sex pheromone from a rotifer

The first isolation and characterization of a sex pheromone from a zooplankter is reported. A 29 kdalton glycoprotein on the surface of females of the marine rotifer Brachionus plicatilis acts as a contact-mating pheromone. This glycoprotein (gp29) is glycosylated with oligosaccharides containing Nacetylglucosamine, mannose, and fucose residues, and these oligosaccharides are necessary for male recognition of females. Males detect this signal by contact chemoreception with receptors located in their corona. Binding of purified glycoprotein to male receptors reduces mating attempts by 93%. An antibody to the glycoprotein binds to females, reducing male mating attempts by 86%. When purified gp29 is bound to sepharose beads, it is sufficient to elicit male mating behavior. This glycoprotein is likely to play a key role in the evolution and maintenance of reproductive isolation in rotifers.     

Selecting a binary Markov model for a precipitation process

This paper uses rth-order categorical Markov chains to model the probability of precipitation. Several stationary and non-stationary high-order Markov models are proposed and compared using BIC. The number of parameters increases exponentially by adding the Markov order. Several classes of high-order Markov models are proposed which their increase of number of parameters are modest. For example models that use the number of precipitation days in a period prior to date, temperature of the previous day and sines/cosines periodic functions (to model the seasonality) are considered. The theory of partial likelihood is used to estimate the parameters. Parsimonious non-stationary first order Markov models with few seasonal terms are found optimal using BIC and temperature does not turn out to be a useful covariate. However BIC seems to underestimate the number of seasonal terms. We have also compared the results with AIC in some cases which tends to pick parsimonious models with more seasonal terms and higher order. We also show that ignoring seasonal terms result in picking higher order Markov chains. Finally we apply the methods to build confidence intervals for the probability of periods with no precipitation or low number of precipitation days in Calgary using historical data from 1980 to 2000.     

Larvae of a colonial ascidian use a non-contact mode of substratum selection on a coral reef

The rate at which larvae successfully recruit into communities of marine benthic invertebrates is partially dependent upon how well larvae avoid benthic predators and settle on appropriate substrata. Therefore, to be able to predict recruitment success, information is needed on how larvae search for settlement sites, whether larvae preferentially settle on certain substrata, and the extent to which there are adequate cues for larvae to find these substrata. This article describes how larvae of the colonial ascidian Diplosoma similis find settlement sites on a coral reef. Direct field observations of larval settlement were made on a fringing reef in Kaneohe Bay, Oahu, Hawaii, between September 1985 and April 1986. A comparison of the substrata that larvae contacted prior to settlement relative to the percentage cover of these substrata on the study reef suggests that larvae are using a non-contact mode of substratum identification to locate suitable settlement sites. This mode of substratum identification allowed 74% of larvae to evade predation by benthic organisms who would otherwise have eaten larvae if they had been contacted. Of those larvae that evaded predation, 88% subsequently settled on the same two substrata upon which most adults are found (dead coral or the green alga Dictyosphaeria cavernosa). This pattern of settlement was probably a result of active selection, since the two substrata cover only 14.4% of the reef's surface and currents had little effect on the direction in which larvae swam. An important contributing factor to the high success rate of larval settlement on suitable substrata was the lack of any temporal decay in substratum preference. It is concluded that for Diplosoma similis larval supply is a sufficient predictor of larval settlement rate. However, for marine invertebrates whose larvae are passively dispersed and exhibit a greater temporal decay in substratum preference, larval settlement should generally have a greater dependency on spatial variation in the abundance of benthic predators and suitable substrata.     

Measurement of Odor-Plume Structure in a Wind Tunnel Using a Photoionization Detector and a Tracer Gas

The patterns of stimulus available to moths flying along pheromone plumes in a 3-m-long wind tunnel were characterized using a high frequency photoionization detector in conjunction with an inert tracer gas. Four contrasting flow regimes and source conditions were produced: odor released in pulses from a vertical and horizontal array of four sources, odor released continuously from a point source, and odor released continuously from a point source into an oscillatory wake. Although the four flow regimes produced plumes of intermittent and fluctuating concentration, there were considerable differences in the structure of the signal presented to the sensor. Pulses of tracer gas released at 10 Hz retained most of their longitudinal and lateral separation. The plume growing in the disturbed flow (`oscillatory'), was broader in its lateral extent than the plume growing in an undisturbed flow (`continuous'), and the concentrations in the former were lower at each downstream position. The signal recorded in the disturbed flow had higher intermittency, but the ratio between the peak concentration and the signal mean was lower than in the continuous plume. Time scales were typically longer in the tunnel than in a field setting, but length scales and the main features of intermittency and fluctuation were similar. Moths flying along plumes of pheromone in this and similar wind tunnels typically slow their velocity and narrow the lateral excursions of their flight track as they approach a pheromone source. Which features of the plumes measured in this study account for these behavioral reactions remains to be determined.     

Mate choice tactics and swarm size: a model and a test in a dance fly

In the dance flyEmpis borealis (L.) (Diptera: Empididae) females gather to swarm and males visit swarms for mating. A model was constructed, based on previously published data, simulating how males may choose among females of different sizes in swarms of different sizes. The focal question was, what influences the number of individuals in the swarm in this and possibly other swarming insects? The relationships between original swarm size and both the number of males arriving per minute and the proportion of males mating are both logarithmic. The model predicted that if these relationships were linear, or if males were able to judge absolute female size, the mean swarm size should increase and be at least four times as large as those found in the field. The only type of male mate choice strategy that gave rise to very large swarms (>25) was size-related choice (if males are able to assess the size of a female in relation to the entire population and not merely to the swarm). Furthermore, no swarming behaviour would occur if males mate independently of swarm size. Thus, the numbers of females attending a given swarm site are influenced by male arrival pattern, male preference for larger swarms, the inability of males to judge the absolute body size of females, and female polyandry. Males searching for mates seem to prefer larger swarms than females searching for a swarm to join, but the mean swarm size is primarily set by the swarm size preference of females. Optimal swarm size predicted from the model was 4.68±0.53 females. In order to test model predictions, 69 natural swarm sites were studied during one season. The mean swarm size was 4.85±4.54 females (median 4.03), and about 90% of swarms consisted of 11 females or fewer. Predicted and observed swarm size did not differ significantly.     

DNA fingerprints of a gorgonian coral: a method for detecting clonal structure in a vegetative species

Clonal reproduction, a common life history strategy among sessile marine invertebrates, can lead to high local abundances of one to a few genotypes in a population. Analysis of the clonal structure of such populations can provide insight into the ecological and evolutionary history of the population, but requires markers that can identify individual genets. Forensic and demographic studies have demonstrated that DNA fingerprinting can provide markers that are unique for an individual genotype. We have generated DNA fingerprints for over 70 colonies of the clonal gorgonian, Plexaura A (Plexaura sp. A) collected from June 1990 through July 1991 in the San Blas Islands, Panama. DNA fingerprints within a singic individual were identical and fingerprinting resolved multiple genotypes within and among reefs. On one reef in the San Blas Islands, Panama, 59% of the colonies sampled were of one genotype and this genotype was not found on any other sampled reefs. A previous study using tissue grafts identified 13 putative clones on these reefs, while DNA fingerprints of the same colonies differentiated 17 genotypes. The present study demonstrates the utility of DNA fingerprinting for distinguishing clones and for identifying clonal structure of marine invertebrate populations.     

Development of a rotorcraft dust-emission parameterization using a CFD model

Flights of rotorcraft over the desert floor can result in significant entrainment of particulate matter into the atmospheric boundary layer. Continuous or widespread operation can lead to local and regional impacts on visibility and air quality. To account for this pollutant source in air quality models, a parameterization scheme is needed that addresses the complex vertical distribution of dust ejected from the rotorcraft wake into the atmospheric surface layer. A method to parameterize the wind and turbulence fields and shear stress at the ground is proposed here utilizing computational fluid dynamics and a parameterized rotor model. Measurements taken from a full scale experiment of rotorcraft flight near the surface are compared to the simulation results in a qualitative manner. The simulation is shown to adequately predict the forward detachment length of the induced ground jet compared to the measured detachment lengths. However, the simulated ground vortex widths and vorticity deviate substantially from the measured values under a range of flight speeds. Results show that the method may be applicable for air quality modeling assuming slow airspeeds of the rotorcraft, with advance ratios of 0.005–0.02.     

Cohabitation of a coral reef sponge and a colonial scyphozoan

A sensitive experimental protocol using cloned corals (hereafter microcolonies) of the branching scleractinian coral Stylophora pistillata and ⁴⁵Ca has been developed to enable reproducible measurements of physiological and biochemical mechanisms involved in calcium transport and compartmentalization during coral calcification. Cloned S. pistillata microcolonies were propagated in the laboratory from small fragments of parent colonies collected in 1990 in the Gulf of Aqaba, Jordan. Cloned microcolonies have several intrinsic properties that help to reduce unwanted biological variability: (1) same genotype; (2) similar sizes and shapes; and (3) absence of macroscopic boring organisms. Errors specifically associated with long-standing problems to do with isotopic exchange were further reduced by producing microcolonies with no skeletal surfaces exposed to the radioisotope-labelled incubation medium. The value of the technique resides principally in its superior ability to elucidate transportation pathways and processes and not in its ability to quantitatively estimate calcium deposition by corals in nature. We describe here a rapidly exchangeable calcium pool in which up to 90% of the radioactive label taken up during incubations is located. This pool (72.9±1.4 nmol Ca mg^-1 protein) is presumably located within the coelenteric cavity as suggested by the following: (1) it has 4-min half-time saturation kinetics; (2) the accumulation of calcium is linearly correlated with the calcium concentration of sea-water; and (3) its insensitivity to metabolic and ion transport inhibitors indicate that membranes do not isolate this compartment. Washout of this large extracellular pool greatly improved estimates of calcium deposition as evidenced by 10 to 40% reduction in coefficients of variation when compared with previous ⁴⁵Ca²⁺ methods described in the literature. Comparisons of calcification measurements simultaneously carried out using the alkalinity anomaly technique and the ⁴⁵Ca protocol described here show that the correlation coefficient of both techniques is close to 1. Unlike previous reports, our ⁴⁵Ca²⁺-derived measurements are slightly lower than those computed from the alkalinity depletion technique.     

Experimental investigation of a line plume in a filling box

Environmental Fluid Mechanics - A series of experiments were conducted to quantify the dynamics of a filling box driven by a line plume that spans the full width of the enclosure. Three...     

Trajectory of a jet in crossflow in a channel bend

Mixing in rivers is an important issue with many applications in water quality and water resource management. Mixing of effluents with ambient river water is especially important, particularly in river bends, where secondary circulation complicates the mixing process. By comparing measured trajectories from dye tests to velocimetry data measured with an acoustic Doppler velocimeter, this paper models the trajectory of a jet in an open channel bend using a modified formula for a jet trajectory in a straight crossflow. The original formula is shown to be insufficient for modeling the trajectory in the bend. Modifications are proposed using the position of the centre of the main secondary circulation cell to account for the bend effects. In the absence of secondary circulation, the modified formula reduces to the original formula. Once the secondary circulation has developed, the proposed formula is shown to have better residuals, lower root mean squared error, and higher \(R^2\) than the original formula.     

Optimal exploitation of a fishery employing a non-linear harvesting function

A harvesting function is developed to described the rate of removal of fish from a fish population. The function incorporates the effects of both the handling or processing time of the catch and the competition, between boats in the fleet, for the fish.We will assume that the growth rate of the fish population can be modelled with a concave, dome shaped growth curve. With this assumption, it has been shown that if the rate of harvesting the fish is linearly related to both effort (which can be thought of as some measure of the number of boats in the fleet) and the population size, then the population will tend towards a single equilibrium level which is globally stable. This paper shows that the saturation effects due to the handling time may generate two equilibrium levels (one stable, one unstable) rather than a single globally stable equilibrium. The results of competition between boats are economically undesirable because of the decrease in efficiency. However, this competition may be beneficial to the exploited fish population.Using the harvesting model derived earlier, the steady state or long term optimal harvesting policies as well as the transition paths to these states are developed. The only constraint is on the maximum allowable effort which is effectively an upper limitation on the fleet size or number of man-hours of fishing.     

Strategies to achieve a carbon neutral society: a review

Environmental Chemistry Letters - The increasing global industrialization and over-exploitation of fossil fuels has induced the release of greenhouse gases, leading to an increase in global...     

Extraterritorial Movements of a Forest Songbird in a Fragmented Landscape

Abstract: Forest isolation resulting from fragmentation is thought to impede the movement of forest songbirds. Because of the difficulty of tracking birds continuously, however, few data exist documenting the influence of isolation and landscape features on avian movements. During the breeding season, male Hooded Warblers (    Wilsonia citrina ) leave their small (<2.5 ha), isolated forest patches to travel between forest fragments. We documented a total of 106 forays (  n = 20 males) and found that individuals traveled up to 2.5 km away from their resident forest patch, primarily to solicit covert extra-pair copulations. Forays occurred despite the absence of forested corridors connecting fragments; even when corridors were present, males most often chose to fly directly across open fields. Resident patch size and distance to forests visited were not correlated with the frequency of forays. The maximum distance males flew over open fields did not exceed 465 m, and longer distances likely inhibit males from traveling outside their woodlots. If territorial establishment depends on the availability of extra-pair partners, then higher degrees of isolation between forests could explain why some species avoid settling in extremely fragmented landscapes. Conservation efforts should limit isolation between forest stands, thereby preserving the ability of animals to move within fragmented landscapes during the breeding season.     

Shell preference in a hermit crab: comparison between a matrix of paired comparisons and a multiple-alternative experiment

The preference of the hermit crab, Calcinus californiensis, among six species of shells, was tested by two different experiments. The first experiment used pair-wise trials, analyzing the preference by Chi-square tests using two different constructions of the null hypothesis. One hypothesis was based on a no-preference among shell species, the second on comparing the number of crabs changing for a particular shell species when two options were given versus the changing when no options were offered. The second experiment was a multiple-alternative test based on a rank ordering of the shell preference. This method has both statistical and resource-saving advantages over the traditional pair-wise comparisons. The sequence of shell preference was similarly independent of the procedure used. The preferred shell species are heavy and might be associated with hydrodynamic advantages and with the protection against predation. The shell preference matches with the pattern of shell occupancy indicating that the shell use in nature is determined by the crab’s preference. The information generated may be used for further research on shell preference as a methodological alternative.     

Change in a bacterial population during the process of degradation of a phytoplankton bloom in a brackish lake

Change in a bacterial population during the process of degradation of a phytoplankton bloom was investigated at Lake Hamana, Japan in June 1981. The predominant phytoplankton were Prorocentrum micans Ehrenberg and P. triestinum Schiller. While most phytoplankton cells were living and moving actively, most bacteria were those in a free-living state (free-living bacteria) and the number of bacteria associated with particulate materials (attached bacteria) was less than a few percent of the total bacterial number. As the decline process proceeded, the number of free-living bacteria remained almost constant or decreased slightly; on the other hand, the number of attached bacteria increased gradually and reached about 40% of the total bacterial number. These results indicate that some of the free-living bacteria become attached to particulate organic matter and grow on the surface of the particles.     

Buoyancy distribution in a filling box segmented by a planar jet

Environmental Fluid Mechanics - Air curtains are produced by thin vertical planar air jets and are used to prevent exchange flows between two fluids with a horizontal density gradient. They have...     

Assessing landscape values: a proposal for a multidimensional conceptual model

To evaluate a specific form of resource management, for example, the maintenance of valuable cultural landscapes, the contributions of many different viewpoints must be considered. In this paper, a model for assessing and integrating the different aspects contributing to landscape evaluation is proposed. Some results of its use in landscape assessment in the Madrid region (central Spain) are discussed.The model takes into account five assessment dimensions which are considered to be independent—the ecological, productive, economic, social and cultural evaluative systems and it recognises and assumes conflicts and trade-offs between these components. The inclusion of the production system as an independent assessment dimension is original and is justified because it is the link that connects the ecological and economic systems. Since this dimension acts most directly on the ecosystem, the production system includes the attribute of ecological or strong (in the sense of [For the Common Good, Beacon Press, Boston, 1994]) sustainability.The evaluation method places special emphasis on defining a conceptual framework, and from this defines scenarios in comparison with which particular development models (landscape planning, resources management) can be evaluated. Seven scenarios, coming from a hypothetical, traditional sustainable scenario of resources management, are defined. One of these, the sound sustainable scenario, is defended as the only one viable in the long term, particularly in developing countries.This method was employed to evaluate the agricultural and natural landscape of the Madrid region municipalities. The multivariate approach adopted was based on the selection of indicator sets for each evaluative dimension. The structure of relationships among indicators was then analysed separately for each dimension and values assigned to the municipalities according to their position on the main axes of the multivariate analyses. Each municipality was assigned to one of the seven development scenarios by means of discriminant analysis. The approach’s greatest assets are its flexibility in the selection of the indicators and the efficacy in its monitoring and comparison of the different analysed cases once a rigorous conceptual framework was established.The paper discusses the conditions for the sustainability of the human activities and provides a method for evaluating and comparing scenarios of resources management.     

CO2 fluxes near a forest edge: a numerical study

In contrast with recent advances on the dynamics of the flow at a forest edge, few studies have considered its role on scalar transport and, in particular, on CO2 transfer. The present study addresses the influence of the abrupt roughness change on forest atmosphere CO2 exchange and contrasts the concentration and flux fields against those of a uniform forested surface. We use an atmospheric boundary layer two-equation closure model that accounts for the flow dynamics and vertical divergence of CO2 sources/sinks within a plant canopy. This paper characterizes the spatial variation of CO2 fluxes as a function of both sources/sinks distribution and the vertical structure of the canopy. Results suggest that the ground source plays a major role in the formation of wave-like vertical CO2 flux behavior downwind of a forest edge, despite the fact that the contribution of foliage sources/sinks changes monotonously. Such a variation is caused by scalar advection in the trunk space and reveals itself as a decrease or increase in vertical fluxes over the forest relative to carbon dioxide exchange of the underlying forest. The effect was more pronounced in model forests where the leaf area is concentrated in the upper part of the canopy. These results can be useful both for interpretation of existing measurements of net ecosystem exchange of CO2 (NEE) from flux towers in limited fetch conditions and in planning future CO2 transport experiments.