BEDLOAD TRANSPORT IN A POOL-RIFFLE SEQUENCE OF A COASTAL ALASKA STREAM1

ABSTRACT: A Helley-Smith pressure differential bedload sampler was used to measure bedload transport at consecutive riffle sections of a riffle-pool-riffle sequence on Bambi Creek, a small (154 ha), second-order stream on Chichagof Island, Alaska, during four storms over a 2-year period. Maximum bedload transport rate measured was 4920 kg/h at a streamflow of 2.35 m³/s corresponding to a storm having a 5-year return interval. Transport of larger sediment (> 8 mm) varied systematically with streamflow at the two sampling locations. At flows up to approximately bankfull, transport of large sediment was greatest at the upstream site; at flows above bankfull, transport of large sediment was greatest at the downstream site. The net import of large sediment to the pool during moderate stormflows and net export of large sediment from the pool during flows above bankfull may be related to a “convergence” or “reversal” of competence between the upstream riffle and subsequent pool at flows approximating bankfull stage. Cross-sections monitored within the study reach indicate that stormflows resulted in net filling of the riffle sections and net scour of the pool; periods of low streamflow resulted in net scour of the riffles and net filling of the pooL     

Application of the ELOHA Framework to Regulated Rivers in the Upper Tennessee River Basin: A Case Study

In order for habitat restoration in regulated rivers to be effective at large scales, broadly applicable frameworks are needed that provide measurable objectives and contexts for management. The Ecological Limits of Hydrologic Alteration (ELOHA) framework was created as a template to assess hydrologic alterations, develop relationships between altered streamflow and ecology, and establish environmental flow standards. We tested the utility of ELOHA in informing flow restoration applications for fish and riparian communities in regulated rivers in the Upper Tennessee River Basin (UTRB). We followed the steps of ELOHA to generate univariate relationships between altered flows and ecology within the UTRB. By comparison, we constructed multivariate models to determine improvements in predictive capacity with the addition of non-flow variables. We then determined whether those relationships could predict fish and riparian responses to flow restoration in the Cheoah River, a regulated system within the UTRB. Although ELOHA provided a robust template to construct hydrologic information and predict hydrology for ungaged locations, our results do not suggest that univariate relationships between flow and ecology (step 4, ELOHA process) can produce results sufficient to guide flow restoration in regulated rivers. After constructing multivariate models, we successfully developed predictive relationships between flow alterations and fish/riparian responses. In accordance with model predictions, riparian encroachment displayed consistent decreases with increases in flow magnitude in the Cheoah River; however, fish richness did not increase as predicted 4 years after restoration. Our results suggest that altered temperature and substrate and the current disturbance regime may have reduced opportunities for fish species colonization. Our case study highlights the need for interdisciplinary science in defining environmental flows for regulated rivers and the need for adaptive management approaches once flows are restored.     

A Regional‐Scale Habitat Suitability Model to Assess the Effects of Flow Reduction on Fish Assemblages in Michigan Streams1

Zorn, Troy G., Paul W. Seelbach, and Edward S. Rutherford, 2012. A Regional‐Scale Habitat Suitability Model to Assess the Effects of Flow Reduction on Fish Assemblages in Michigan Streams. Journal of the American Water Resources Association (JAWRA) 48(5): 871‐895. DOI: 10.1111/j.1752‐1688.2012.00656.x Abstract: In response to concerns over increased use and potential diversion of Michigan’s freshwater resources, and the resulting state legislative mandate, an advisory council created an integrated assessment model to determine the potential for water withdrawals to cause an adverse resource impact to fish assemblages in Michigan’s streams. As part of this effort, we developed a model to predict how fish assemblages characteristic of different stream types would change in response to decreased stream base flows. We describe model development and use in this case study. The model uses habitat suitability information (i.e., catchment size, base‐flow yield, and July mean water temperature) for over 40 fish species to predict assemblage structure in an individual river segment under a range of base‐flow reductions. By synthesizing model runs for individual fish species at representative segments for each of Michigan’s 11 ecological stream types, we developed curves describing how typical fish assemblages in each type respond to flow reduction. Each stream type‐specific, fish response curve was used to identify streamflow reduction levels resulting in adverse resource impacts to characteristic fish populations, the regulatory standard. Used together with a statewide map of stream types, our model provided a spatially comprehensive framework for evaluating impacts of flow withdrawals on biotic communities across a diverse regional landscape.     

Analysis of Daily Peaking and Run‐of‐River Operations with Flow Variability Metrics,Considering Subdaily to Seasonal Time Scales

Environmental flows are an important consideration in licensing hydropower projects as operational flow releases can result in adverse conditions for downstream ecological communities. Flow variability assessments have typically focused on pre‐ and post‐dam conditions using metrics based on daily averaged flow values. This study used subdaily and daily flow data to assess environmental flow response to changes in hydropower operations from daily peaking to run‐of‐river. An analysis tool was developed to quantify flow variability metrics and was applied to four hydropower projects. Significant differences were observed between operations at the 99% confidence level in the median flow values using hourly averaged flow datasets. Median daily rise and fall rates decreased on average 34.5 and 27.9%, respectively, whereas median hourly rise and fall rates decreased on average 50.1 and 50.6%, respectively. Differences in operational flow regimes were more pronounced in the hourly averaged flow datasets and less pronounced or nonexistent in the daily averaged flow datasets. These outcomes have implications for the development of ecology‐flow relationships that quantify effects of flow on processes such as fish stranding and displacement, along with habitat stability. Results indicate that flow variability statistics should be quantified using subdaily datasets to accurately represent the nature of hydropower operations, especially for daily peaking facilities.     

Regulated flushing in a gravel-bed river for channel habitat maintenance: A Trinity River fisheries case study

The operation of Trinity and Lewiston Dams on the Trinity River in northern California in the United States, combined with severe watershed erosion, has jeopardized the existence of prime salmonid fisheries. Extreme streamflow depletion and stream sedimentation below Lewiston have resulted in heavy accumulation of coarse sediment on riffle gravel and filling of streambed pools, causing the destruction of spawning, nursery, and overwintering habitat for prized chinook salmon (Salmo gairdnerii) and steelhead trout (Oncorhynchus tschawytscha). Proposals to restore and maintain the degraded habitat include controlled one-time remedial peak flows or annual maintenance peak flows designed to flush the spawning gravel and scour the banks, deltas, and pools. The criteria for effective channel restoration or maintenance by streambed flushing and scouring are examined here, as well as the mechanics involved.The liabilities of releasing mammoth scouring-flushing flows approximating the magnitude that preceded reservoir construction make this option unviable. The resulting damage to fish habitat established under the postproject streamflow regime, as well as damage to human settlements in the floodplain, would be unacceptable, as would the opportunity costs to hydroelectric and irrigation water users. The technical feasibility of annual maintenance flushing flows depends upon associated mechanical and structural measures, particularly instream maintenance dredging of deep pools and construction of a sediment control dam on a tributary where watershed erosion is extreme. The cost effectiveness of a sediment dam with a limited useful economic life, combined with perpetual maintenance dredging, is questionable.     

ANADROMOUS SALMONID RECOVERY IN THE UMATILLA RWER BASIN,OREGON: A CASE STUDY1

ABSTRACT: The Umatilla River Basin Fisheries Restoration Plan was initiated in the early 1980s to mitigate salmonid losses caused by hydroelectric development and habitat degradation. The objectives are to enhance the abundance of endemic steelhead and reintroduce extirpated chinook and coho salmon. The project prompted collaborative effort among federal, state, and tribal agencies, and local water users. It has incorporated habitat restoration, flow enhancement, fish passage improvements, and population supplementation through artificial production. Water exchanges have successfully increased minimum flows during spring and fall migration. While flows remain depressed compared to historic conditions, there is potential for improved habitat, passage, and homing. The mean adult‐to‐adult return rate of hatchery‐reared steelhead exceeded replacement and that of the naturally‐spawning population. Although the smolt‐to‐adult survival rates of hatchery‐reared fish fluctuate, salmonid escapement has increased in recent years, permitting steelhead and spring chinook harvest. Enumeration of potential spawners and observed redds reveals an increase in natural production of all supplemented species. Comparison of hatchery‐reared and naturally‐spawning steelhead populations revealed differences in life history characteristics (in age composition and sex ratios) though run timing and genetic stock compositions of the two components of the populations have not differed. Sustained monitoring is needed to determine benefits of integrating habitat restoration and artificial production in restoring salmonid populations.     

Assessing Influences of Hydrology,Physicochemistry, and Habitat on Stream Fish Assemblages Across a Changing Landscape1

Abstract: We evaluated the impact of land cover on fish assemblages by examining relationships between stream hydrology, physicochemistry, and instream habitat and their association with fish responses in streams draining 18 watersheds of the Lower Piedmont of western Georgia. Several important relationships between land use and physicochemical, hydrological, and habitat parameters were observed, particularly higher frequency of spate flows, water temperatures, and lower dissolved oxygen (DO) with percentage impervious surface (IS) cover, higher habitat quality with percentage forest cover, and elevated suspended solid concentrations with percentage pasture cover. Fish assemblages were largely explained by physicochemical and hydrological rather than habitat variables. Specifically, fish species diversity, richness, and biotic integrity were lower in streams that received high frequency of spate flows. Also, overall fish assemblage structure as determined by nonmetric multidimensional scaling was best described by total dissolved solids (TDS) and DO, with high TDS and low DO streams containing sunfish‐based assemblages and low TDS and high DO streams containing minnow‐based assemblages. Our results suggest that altered hydrological and physicochemical conditions, induced largely by IS, may be a strong determinant of fish assemblage structure in these lowland streams and allow for a more mechanistic understanding of how land use ultimately affects these systems.     

REACH SCALE HYDRAULIC ASSESSMENT OF INSTREAM SALMONID HABITAT RESTORATION1

ABSTRACT: This study investigates the use of a two‐dimensional hydrodynamic model (River2D) for an assessment of the effects of instream large woody debris and rock groyne habitat structures. The bathymetry of a study reach (a side channel of the Chilliwack River located in southwestern British Columbia) was surveyed after the installation of 11 instream restoration structures. A digital elevation model was developed and used with a hydrodynamic model to predict local velocity, depth, scour, and habitat characteristics. The channel was resurveyed after the fall high‐flow season during which a bankfull event occurred. Pre‐flood and post‐flood bathymetry pool distributions were compared. Measured scour was compared to predicted shear and pre‐flood and post‐flood fish habitat indices for coho salmon (Oncorhynchus kisutch) and steelhead trout (O. mykiss) were compared. Two‐dimensional flow model velocity and depth predictions compare favorably to measured field values with mean standard errors of 24 percent and 6 percent, respectively, while areas of predicted high shear coincide with the newly formed pool locations. At high flows, the fish habitat index used (weighted usable area) increased by 150 percent to 210 percent. The application of the hydrodynamic model indicated a net habitat benefit from the restoration activities and provides a means of assessing and optimizing planned works.     

A Comparison of Single and Multiple Habitat Protocols for Collecting Macroinvertebrates in Wadeable Streams1

Abstract: In 2003, we compared two benthic macroinvertebrate sampling methods that are used for rapid biological assessment of wadeable streams. A single habitat method using kick sampling in riffles and runs was compared to a multiple habitat method that sampled all available habitats in proportion of occurrence. Both methods were performed side‐by‐side at 41 sites in lower gradient streams of the Piedmont and Northern Piedmont ecoregions of the United States, where riffle habitat is less abundant. Differences in sampling methods were examined using similarity indices, two multimetric indices [the family‐level Virginia Stream Condition Index (VSCI) and the species‐level Macroinvertebrate Biotic Integrity Index (MBII)], their component metrics, and bioassessment endpoints based on each index. Index scores were highly correlated between single and multiple habitat field methods, and sampling method comparability, based on comparison of similarities between and within sampling methods, was particularly high for species level data. The VSCI scores and values of most of its component metrics were not significantly higher for one particular method, but relationships between single and multiple habitat values were highly variable for percent Ephemeroptera, percent chironomids, and percent Plecoptera and Trichoptera (Hydropsychidae excluded). A similar level of variability in the relationship was observed for the MBII and most of its metrics, but Ephemeroptera richness, percent individuals in the dominant five taxa, and Hilsenhoff Biotic Index scores all exhibited differences in values between single and multiple habitat field methods. When applied to multiple habitat samples, the MBII exhibited greater precision, higher index scores, and higher assessment categories than when applied to single habitat samples at the same sites. In streams with limited or no riffle habitats, the multiple habitat method should provide an adequate sample for biological assessment, and at sites with abundant riffle habitat, little difference would be expected between the single and multiple habitat field methods. Thus, in geographic areas with a wide variety of stream types, the multiple habitat method may be more desirable. Even so, the variability in the relationship between single and multiple habitat methods indicates that the data are not interchangeable, and we suggest that any change in sampling method should be accompanied by a recalibration of any existing assessment tool (e.g., multimetric index) with data collected using the new method, regardless of taxonomic level.     

Long‐Term Water Quality and Biological Responses to Multiple Best Management Practices in Rock Creek,Idaho1

Abstract: Water quality and macroinvertebrate assemblage data from 1981 to 2005 were assessed to evaluate the water quality and biological responses of a western trout stream to the implementation of multiple best management practices (BMPs) on irrigated cropland. Data from Rock Creek near Twin Falls, Idaho, a long‐term monitoring site, were assembled from state and federal sources to provide the evaluation. Seasonal loads of the nonpoint source pollutants suspended sediment (SS), total phosphorus (TP), and nitrate‐nitrite (NN) were estimated using a regression model with time‐series streamflow data and constituent concentrations. Trends in the macroinvertebrate assemblages were evaluated using a number of biological metrics and nonmetric multidimensional scaling ordination. Regression analysis found significant annual decreases in TP and SS flow‐adjusted concentrations during the BMP implementation period from 1983 to 1990 of about 7 and 10%, respectively. These results are coincident with the implementation of multiple BMPs on about 75% of the irrigated cropland in the watershed. Macroinvertebrate assemblages during this time also responded with a change in taxa composition resulting in improved biotic index scores. Taxon specific TP and SS optima, empirically derived from a large national dataset, predicted a decrease in SS concentrations of about 37% (52 to 33 mg/l) and a decrease in TP concentrations of about 50% (0.20 to 0.10 mg/l) from 1981 to 1987. Decreasing trends in TP, SS, and NN pollutant loads were primarily the result of naturally low streamflow conditions during the BMP post‐implementation period from 1993 to 2005. Trends in macroinvertebrate responses during 1993 to 2005 were confounded by the introduction of the New Zealand mudsnail (Potamopyrgus  antipodarum), which approached densities of 100,000 per m² in riffle habitat. The occurrence of this invasive species appears to have caused a major shift in composition and function of the macroinvertebrate assemblages.     

Revealing the Diversity of Natural Hydrologic Regimes in California with Relevance for Environmental Flows Applications

Alterations to flow regimes for water management objectives have degraded river ecosystems worldwide. These alterations are particularly profound in Mediterranean climate regions such as California with strong climatic variability and riverine species highly adapted to the resulting flooding and drought disturbances. However, defining environmental flow targets for Mediterranean rivers is complicated by extreme hydrologic variability and often intensive water management legacies. Improved understanding of the diversity of natural streamflow patterns and their spatial arrangement across Mediterranean regions is needed to support the future development of effective flow targets at appropriate scales for management applications with minimal resource and data requirements. Our study addresses this need through the development of a spatially explicit reach‐scale hydrologic classification for California. Dominant hydrologic regimes and their physio‐climatic controls are revealed, using available unimpaired and naturalized streamflow time‐series and generally publicly available geospatial datasets. This methodology identifies eight natural flow classes representing distinct flow sources, hydrologic characteristics, and catchment controls over rainfall‐runoff response. The study provides a broad‐scale hydrologic framework upon which flow‐ecology relationships could subsequently be established towards reach‐scale environmental flows applications in a complex, highly altered Mediterranean region.     

IDENTIFICATION OF CHANGES IN STREAMFLOW CHARACTERISTICS1

ABSTRACT: A set of procedures for identifying changes in selected streamflow characteristics at sites having long‐term continuous streamflow records is illustrated by using streamflow data from the Waccamaw River at Freeland, North Carolina for the 55‐year period of 1940–1994. Data were evaluated and compared to streamflow in the adjacent Lumber River Basin to determine if changes in streamflow characteristics in the Waccamaw River were localized and possibly the result of some human activity, or consistent with regional variations. Following 1963, droughts in the Waccamaw Basin seem to have been less severe than in the Lumber Basin, and the annual one‐, seven‐, and 30‐day low flows exhibited a slightly increasing trend in the Waccamaw River. Mean daily flows in the Waccamaw River at the 90 percent exceedance level (low flows) during 1985–194, a relatively dry period, were very nearly equal to flows at the same exceedance level for 1970–1979, which represents the 10‐year period between 1940 and 1994 with the highest flows. Prior to the 1980s, flows per unit drainage area in the Waccamaw Basin were generally less than those in the Lumber Basin, but after 1980, the opposite was true. The ratio of base flow to runoff in the Waccamaw River may have changed relative to that in the Lumber River in the late 1970s. There was greater variability in Waccamaw River streamflow than in Lumber River flow, and flow variability in the Waccamaw River may have increased slightly during 1985–1994.     

Management of the Spring Snowmelt Recession in Regulated Systems

In an effort to restore predictable ecologically relevant spring snowmelt recession flow patterns in rivers regulated by dams, this study defined a methodology by which spring flow regimes can be modeled in regulated systems from the quantifiable characteristics of spring snowmelt recessions in unregulated rivers. An analysis of eight unregulated rivers across the Sierra Nevada mountain range in California found that unregulated systems behaved similarly with respect to seasonal spring patterns and recession limb curvature, and thus prescribed flows could be designed in a manner that mimics those predictable characteristics. Using the methodology to quantify spring recession flows in terms of a daily percent decrease in flow, a series of flow recession scenarios were created for application in an existing hydrodynamic model for the regulated Rubicon River. The modeling results showed that flow recessions with slow ramping rates similar to those observed in unregulated rivers (less than 10% per day) were likely to be protective of native aquatic species, such as the Foothill yellow‐legged frog, while flows that receded at greater rates would likely result in desiccation of egg masses and potential stranding of tadpoles and fry. Furthermore, recession rates of less than 10% per day provided the most spatially diverse hydraulic habitat in the modeled domain for an appropriate duration in spring to support all native species guilds and maximize aquatic biodiversity.     

Modeling the Relations Between Flow Regime Components,Species Traits,and Spawning Success of Fishes in Warmwater Streams

Modifications to stream hydrologic regimes can have a profound influence on the dynamics of their fish populations. Using hierarchical linear models, we examined the relations between flow regime and young-of-year fish density using fish sampling and discharge data from three different warmwater streams in Illinois, Alabama, and Georgia. We used an information theoretic approach to evaluate the relative support for models describing hypothesized influences of five flow regime components representing: short-term high and low flows; short-term flow stability; and long-term mean flows and flow stability on fish reproductive success during fish spawning and rearing periods. We also evaluated the influence of ten fish species traits on fish reproductive success. Species traits included spawning duration, reproductive strategy, egg incubation rate, swimming locomotion morphology, general habitat preference, and food habits. Model selection results indicated that young-of-year fish density was positively related to short-term high flows during the spawning period and negatively related to flow variability during the rearing period. However, the effect of the flow regime components varied substantially among species, but was related to species traits. The effect of short-term high flows on the reproductive success was lower for species that broadcast their eggs during spawning. Species with cruiser swimming locomotion morphologies (e.g., Micropterus) also were more vulnerable to variable flows during the rearing period. Our models provide insight into the conditions and timing of flows that influence the reproductive success of warmwater stream fishes and may guide decisions related to stream regulation and management.     

Use of avian and mammalian guilds as indicators of cumulative impacts in riparian-wetland areas

A new method of assessing cumulative effects of human activities on bird and mammal communities of riparian-wetland areas was developed by using response guilds to reflect how species theoretically respond to habitat disturbance on a landscape level. All bird and mammal species of Pennsylvania were assigned values for each response guild using documented information for each species, to reflect their sensitivity to disturbances; high guild scores corresponded to low tolerance toward habitat disturbance. We hypothesized that, given limited time and resources, determining how wildife communities change in response to environmental impacts can be done more efficiently with a response-guild approach than a single-species approach. To test the model, censuses of birds and mammals were conducted along wetland and riparian areas of a protected and a disturbed watershed in central Pennsylvania. The percent of bird species with high response-guild scores (i.e., species that had specific habitat requirements and/or were neotropical migrants) remained relatively stable through the protected watershed. As intensity of habitat alteration increased through the disturbed watershed, percentage of bird species with high response-guild scores decreased. Only 2%–3% of the neotropical migrants that had specific habitat requirements were breeding residents in disturbed habitats as compared to 17%–20% in reference areas. Species in the edge and exotic guild classifications (low guild scores) were found in greater percentages in the disturbed watershed. Composition of mammalian guilds showed no consistent pattern associated with habitat disturbance. Avian response guilds reflected habitat disturbance more predictively than mammalian response guilds.     

Putting the “Ecology” into Environmental Flows: Ecological Dynamics and Demographic Modelling

There have been significant diversions of water from rivers and streams around the world; natural flow regimes have been perturbed by dams, barriers and excessive extractions. Many aspects of the ecological 'health' of riverine systems have declined due to changes in water flows, which has stimulated the development of thinking about the maintenance and restoration of these systems, which we refer to as environmental flow methodologies (EFMs). Most existing EFMs cannot deliver information on the population viability of species because they: (1) use habitat suitability as a proxy for population status; (2) use historical time series (usually of short duration) to forecast future conditions and flow sequences; (3) cannot, or do not, handle extreme flow events associated with climate variability; and (4) assume process stationarity for flow sequences, which means the past sequences are treated as good indicators of the future. These assumptions undermine the capacity of EFMs to properly represent risks associated with different flow management options; assumption (4) is untenable given most climate-change predictions. We discuss these concerns and advocate the use of demographic modelling as a more appropriate tool for linking population dynamics to flow regime change. A 'meta-species' approach to demographic modelling is discussed as a useful step from habitat based models towards modelling strategies grounded in ecological theory when limited data are available on flow-demographic relationships. Data requirements of demographic models will undoubtedly expose gaps in existing knowledge, but, in so doing, will strengthen future efforts to link changes in river flows with their ecological consequences.     

Relative Importance of Water‐Quality Stressors in Predicting Fish Community Responses in Midwestern Streams

Fish, habitat, and water chemistry data were collected from 98 streams in the midwestern United States, an area dominated by intense cultivation of row crops, in order to identify important water‐quality stressors to fish communities. We focused on 10 stressors including riparian disturbance, riparian vegetative cover, instream fish cover, streambed sedimentation, streamflow variability, total nitrogen, total phosphorus, minimum dissolved oxygen, pesticides, and bed sediment contaminants. Fish community response variables included a measure of observed/expected taxonomic completeness; species‐specific tolerances to nitrogen, phosphorus, dissolved oxygen, and water temperature; the percent of species classified as macrohabitat generalists; and an index of pesticide toxicity to fish. Multivariate analysis indicated that total nitrogen was the most important stressor, signifying that fish communities were responding to total nitrogen despite relatively high levels common to an agricultural setting. Individually, fish taxonomic completeness decreased with increasing streambed sedimentation, whereas fish community tolerance to total phosphorus increased with increasing streambed sedimentation, riparian disturbance, and total nitrogen. These findings underscore the importance of multiple biological response metrics to better understand the effects of water‐quality stressors on fish communities and highlight the complex relations between total phosphorus and fish communities.     

Effects of channel incision on base flow stream habitats and fishes

Channel incision is a widespread phenomenon that results in stream and riparian habitat degradation. Fishes and physical habitat variables were sampled at base flow from three incised stream channels and one reference stream in northwest Mississippi, USA, to quantify incision effects on fish habitat and provide a basis for habitat rehabilitation planning and design. Incised channels were sampled in spring and autumn; the reference channel was sampled only in the autumn. Incised channel habitat quality was inferior to the reference channel despite the presence of structures designed to restore channel stability. Incised channels had physical habitat diversity levels similar to a nonincised reference channel, but contained fewer types of habitat. At base flow, incised channels were dominated by shallow, sandy habitats, moderate to high mean local Froude numbers, and had relatively little organic debris in their beds. In contrast, the reference stream had greater mean water depth, contained more woody debris, and provided more deep pool habitat. Fish assemblages in incised channels were composed of smaller fishes representing fewer species relative to the reference site. Fish species richness was directly proportional to the mean local Froude number, an indicator of the availability of pool habitat.     

Establishing standards and assessment criteria for ecological instream flow needs in agricultural regions of Canada

Agricultural land use can place heavy demands on regional water resources, strongly influencing the quantity and timing of water flows needed to sustain natural ecosystems. The effects of agricultural practices on streamflow conditions are multifaceted, as they also contribute to the severity of impacts arising from other stressors within the river ecosystem. Thus, river scientists need to determine the quantity of water required to sustain important aquatic ecosystem components and ecological services, to support wise apportionment of water for agricultural use. It is now apparent that arbitrarily defined minimum flows are inadequate for this task because the complex habitat requirements of the biota, which underpin the structure and function of a river ecosystem, are strongly influenced by predictable temporal variations in flow. We present an alternative framework for establishing a first-level, regional ecological instream flow needs standard based on adoption of the Indicators of Hydrologic Alteration/Range of Variability Approach as a broadly applicable hydrological assessment tool, coupling this to the Canadian Ecological Flow Index which assesses ecological responses to hydrological alteration. By explicitly incorporating a new field-based ecological assessment tool for small agricultural streams, we provide a necessary verification of altered hydrology that is broadly applicable within Canada and essential to ensure the continuous feedback between the application of flow management criteria and ecological condition.