Genomic erosion in a demographically recovered bird species during conservation rescue

The pink pigeon (Nesoenas mayeri) is an endemic species of Mauritius that has made a remarkable recovery after a severe population bottleneck in the 1970s to early 1990s. Prior to this bottleneck, an ex situ population was established from which captive-bred individuals were released into free-living subpopulations to increase population size and genetic variation. This conservation rescue led to rapid population recovery to 400–480 individuals, and the species was twice downlisted on the International Union for the Conservation of Nature (IUCN) Red List. We analyzed the impacts of the bottleneck and genetic rescue on neutral genetic variation during and after population recovery (1993–2008) with restriction site-associated sequencing, microsatellite analyses, and quantitative genetic analysis of studbook data of 1112 birds from zoos in Europe and the United States. We used computer simulations to study the predicted changes in genetic variation and population viability from the past into the future. Genetic variation declined rapidly, despite the population rebound, and the effective population size was approximately an order of magnitude smaller than census size. The species carried a high genetic load of circa 15 lethal equivalents for longevity. Our computer simulations predicted continued inbreeding will likely result in increased expression of deleterious mutations (i.e., a high realized load) and severe inbreeding depression. Without continued conservation actions, it is likely that the pink pigeon will go extinct in the wild within 100 years. Conservation rescue of the pink pigeon has been instrumental in the recovery of the free-living population. However, further genetic rescue with captive-bred birds from zoos is required to recover lost variation, reduce expression of harmful deleterious variation, and prevent extinction. The use of genomics and modeling data can inform IUCN assessments of the viability and extinction risk of species, and it helps in assessments of the conservation dependency of populations.     

Splitting the tail of the displacement kernel shows the unimportance of kurtosis

Animals disperse in space through different movement behaviors, resulting in different displacement distances. This is often described with a displacement kernel where the long-distance dispersers are within the tail of the kernel. A displacement with a large proportion of long-distance dispersers may have impact on different aspects of spatial ecology such as invasion speed, population persistence, and distribution. It is, however, unclear whether the kurtosis of the kernel plays a major role since a fatter tail also influences the variance of the kernel. We modeled displacement in landscapes with different amounts and configurations of habitats and handled kurtosis and variance separately to study how these affected population distribution and transition time. We conclude that kurtosis is not important for any of these aspects of spatial ecology. The variance of the kernel, on the other hand, was of great importance to both population distribution and transition time. We argue that separating variance and kurtosis can cast new light on the way in which long-distance dispersers are important in ecological processes. Consequences for empirical studies are discussed.     

Interactions among bacterial-feeding nematode species at different levels of food availability

Accurate prediction of the biodiversity–ecosystem functioning relationship requires adequate understanding of the interactions among species in a community. Effects of species diversity on ecosystem functioning are usually considered more pronounced with increasing functional dissimilarity, although species within functional groups may also perform non-identical functions and interact with each other. Here we present results of a laboratory experimental study aimed at elucidating whether interspecific interactions among species within a single nematode trophic group, bacterivores, (1) affect population development and community structure, and (2) depend on food availability. We studied the population growth of Rhabditis (Pellioditis) marina, a rhabditid nematode known to favour very high food densities when in monoculture, and of Diplolaimelloides meyli and D. oschei, congeneric Monhysteridae known to perform better in monocultures at intermediate food availability. Both Diplolaimelloides species showed significantly different patterns of food-density dependence in combination culture compared to monoculture. At very high food availability, the rhabditid nematode facilitated growth of both monhysterid species, probably as a result of down-regulation of bacterial density. At the lowest food availabilities, the presence of even low numbers of monhysterid nematodes lead to exclusion of the rhabditid, which at such low food availability has a very inefficient food uptake. At intermediate food availabilities, abundances of both Diplolaimelloides species were strongly depressed in the combination culture, as a result of food depletion by the rhabditid, indirect inhibitory interactions between the two congeneric species, or both. The complexity of the species interactions render predictions on the outcome and functional consequences of changes in within-trophic-group diversity highly problematic.     

The effect of size and cheliped autotomy on sexual competition between males of the mud crab <Emphasis Type="Italic">Cyrtograpsus angulatus</Emphasis> Dana

Size advantage in male–male competition over mates, combined with male preference over large females, is a common feature that can drive to size assortative mating and, eventually, sexual selection. In crabs, appendage autotomy can affect assortative mating and opportunity for sexual selection by affecting size advantage in mating contests. In this work, we evaluate the effect of size and appendage autotomy in generating assortative mating in the mud crab Cyrtograpsus angulatus. Field observations of guarding pairs in two different populations show a positive correlation between carapace width of males and females in both the populations. In one of the populations, incidence of appendage autotomy was low and the variability in the size of reproductive males was lower than the variability in the size of randomly collected males (i.e. only larger males were successful in getting a female), whereas there was no differences in the other population (i.e. most male sizes were successful) where the incidence of appendage autotomy was very high, indicating that the importance of size is higher when the incidence of autotomy is low. In this context, experiments (in both populations) show that, in contests for a female, larger males outcompete smaller ones only when they had intact appendages. When males had missing chelipeds, winning or loosing against smaller males was random. This may lead to a decrease in the importance of male size in populations with high incidence of cheliped autotomy, affecting assortative mating and opportunity for selection and, thus, affecting selective pressures.     

The effect on dispersal from complex correlations in small-scale movement

Calculations of large-scale displacement distances were made to evaluate the combined effect of small-scale movement pattern of a Collembola, Protaphorura armata. The effect of presence of food and conspecific density on turning angle, step length and activity/motility was investigated. Calculations of net square displacement were made both by assuming correlated random walk (CRW) and by resampling data to account for correlation structures in movement patterns that violate the assumptions of CRW.     

Ammonia emissions from different pig production scales and their temporal variations in the North China Plain

ABSTRACT

Pig production systems in China are shifting from small to industrial scale. Significant variation in housing ammonia (NH₃) emissions can exist due to differences in diet, housing design, and management practices. However, there is a knowledge gap regarding the impacts of farm-scale in China, which may be critical in identifying hotspots and mitigation targets. Here, continuous in-situ NH₃ concentration measurements were made at pig farms of different scales for sows and fattening pigs over periods of 3–6 days during two different seasons (summer vs. winter). For the sow farms, NH₃ emission rates were greater at the small farm (summer: 0.52 g pig^?1 hr^?1; winter: 0.21 g pig^?1 hr^?1) than at the large farm (summer: 0.34 g pig^?1 hr^?1; winter: 0.12 g pig^?1 hr^?1). For the fattening pig farms, NH₃ emission rates were greater at the large farm (summer: 0.22 g pig^?1 hr^?1; winter: 0.16 g pig^?1 hr^?1) than at the small farm (summer: 0.19 g pig^?1 hr^?1; winter: 0.07 g pig^?1 hr^?1). Regardless of farm scale, the NH₃ emission rates measured in summer were greater than those in winter; the NH₃ emission rates were greater in the daytime than at the nighttime; a positive relationship (R² = 0.06–0.68) was established between temperature and NH₃ emission rate, whereas a negative relationship (R² = 0.10–0.47) was found between relative humidity and NH₃ emission rate. The effect of farm-scale on indoor NH₃ concentration could mostly be explained by the differences in ventilation rates between farms. The diurnal variation in NH₃ concentration could be partly explained by ventilation rate (R² = 0.48–0.78) in the small traditional farms and by emission rate (R² = 0.26–0.85) in the large industrial farms, except for the large fattening pig farm in summer. Overall, mitigation of NH₃ emissions from sow farms should be a top priority in the North China Plain.

Implications: The present study firstly examined the farm-scale effect of ammonia emissions in the North China Plain. Of all farms, the sow farm was identified as the greatest source of ammonia emission. Regardless of farm scale, ammonia emission rates were observed to be higher in summer. Ammonia concentrations were mostly higher in the large industrial farms partly due to lower ventilation rates than in the small traditional farms.     

Analysis of emergency situations at municipal solid waste landfills

Journal of Material Cycles and Waste Management - This work focuses on the issue of emergency prevention in the operation of municipal solid waste landfills. In this work, an emergency is...     

Organotin Compounds and Selected Metals in the Marine Environment of Northern Adriatic Sea

The extent of pollution with organotin compounds and Cd, Pb, Ni, Cu, Zn, Cr, Mn, V, Co and Al was investigated in sediments and mussels (Mytilus galloprovincialis) from the Slovenian costal area of the Northern Adriatic Sea. Sampling was performed in Marina Portorož, Dockyard Izola, non exposed area of the Bay of Mesečev zaliv and in Mariculture Sečovlje. Mussels were taken in the summer and winter time, while sediments were collected during the winter sampling. Organotin compounds were determined by gas chromatography—mass spectrometry and metals by flame or electrothermal atomic absorption spectrometry. The accuracies of the analytical procedures were checked by the analysis of standard reference materials CRM 477 mussel tissue and PACS 2 marine sediment (organotin compounds) and SRM 2976 mussel tissue and CRM 320 river sediment (metals). Good agreements between certified and determined values were obtained. Normalization procedure to Al was applied to estimate the anthropogenic inputs of metals in sediments. The analyses of sediments demonstrated moderate pollution with organotin compounds in Marina Portorož and in Dockyard Izola. Concentrations of tributyltin species were higher than those of dibutyltin and monobutyltin. In mussels substantial contamination with tributyltin was observed in Marina Porotrož and Dockyard Izola. The extent of pollution was higher in the winter time. The analysis of metals in sediments exhibited elevated concentrations in Marina Portorož and Dockyard Izola. Data from the normalization procedure indicated the anthropogenic inputs of Cu, Zn and Cr in Marina Portorož and Mn in Bay of Mesečev zaliv and Dockyard Izola. Mussels, as accumulators of pollutants, in general contained higher metal concentrations during winter time in Dockyard Izola.     

Indoor and outdoor concentrations of PM2.5 trace elements at homes, preschools and schools in Stockholm, Sweden

Fine particles (PM2.5) were sampled indoors and outdoors at 40 sampling sites; in ten classrooms in five schools, at ten preschools and 20 non-smoking homes, in three communities in Stockholm, Sweden, during nine 2-week periods. Each sampling site was sampled twice, once during winter and once during spring. The samples were analysed for elemental concentrations using X-ray fluorescence (XRF) spectroscopy. In all locations significantly higher outdoor concentrations were found for elements that are related to long-range transported air masses (S, Ni, Br and Pb), while only Ti was higher indoors in all locations. Similar differences for S, Br and Pb were found in both seasons for homes and schools. In preschools different seasonal patterns were seen for the long-range transported elements S, Br and Pb and the crustal elements Ti, Mn and Fe. The indoor/outdoor ratios for S and Pb suggest an outdoor PM2.5 particle net infiltration of about 0.6 in these buildings. The community located 25 km from the city centre had significantly lower outdoor concentrations of elements of crustal or traffic origin compared with the two central communities, but had similar levels of long-range transported elements. Significant correlations were found between PM2.5 and most elements outdoors (rs = 0.45-0.90). Copper levels were found to correlate well (rs = 0.64-0.91) to the traffic marker NO2 during both winter and spring in all locations. Copper may be a suitable elemental marker for traffic-related aerosols in health studies in areas without other significant outdoor Cu sources.