Prevalence of Human Noroviruses in Frozen Marketed Shellfish,Red Fruits and Fresh Vegetables

Noroviruses (NoVs), currently recognised as the most common human food-borne pathogens, are ubiquitous in the environment and can be transmitted to humans through multiple foodstuffs. In this study, we evaluated the prevalence of human NoV genogroups I (GI) and II (GII) in 493 food samples including soft red fruits (n = 200), salad vegetables (n = 210) and bivalve mollusc shellfish (n = 83), using the Bovine Enterovirus type 1 as process extraction control for the first time. Viral extractions were performed by elution concentration and genome detection by TaqMan Real-Time RT-PCR (RT-qPCR). Experimental contamination using hepatitis A virus (HAV) was used to determine the limit of detection (LOD) of the extraction methods. Positive detections were obtained from 2 g of digestive tissues of oysters or mussels kept for 16 h in seawater containing 2.0–2.7 log₁₀ plaque-forming units (PFU)/L of HAV. For lettuces and raspberries, the LOD was, respectively, estimated at 2.2 and 2.9 log₁₀ PFU per 25 g. Of the molluscs tested, 8.4 and 14.4 % were, respectively, positive for the presence of GI NoV and GII NoV RNA. Prevalence in GI NoVs varied from 11.9 % for the salad vegetables samples to 15.5 % for the red soft fruits. Only 0.5 % of the salad and red soft fruits samples were positive for GII NoVs. These results highlight the high occurrence of human NoVs in foodstuffs that can be eaten raw or after a moderate technological processing or treatment. The determination of the risk of infection associated with an RT-qPCR positive sample remains an important challenge for the future.     

Benefits of adapting to sea level rise: the importance of ecosystem services in the French Mediterranean sandy coastline

Regional Environmental Change - This article proposes an innovative approach to assess the benefits of adapting to sea level rise (SLR) in a coastal area on a regional scale. The valuation...     

Use of environmental DNA in assessment of fish functional and phylogenetic diversity

Assessing the impact of global changes and protection effectiveness is a key step in monitoring marine fishes. Most traditional census methods are demanding or destructive. Nondisturbing and nonlethal approaches based on video and environmental DNA are alternatives to underwater visual census or fishing. However, their ability to detect multiple biodiversity factors beyond traditional taxonomic diversity is still unknown. For bony fishes and elasmobranchs, we compared the performance of eDNA metabarcoding and long-term remote video to assess species’ phylogenetic and functional diversity. We used 10 eDNA samples from 30 L of water each and 25 hr of underwater videos over 4 days on Malpelo Island (pacific coast of Colombia), a remote marine protected area. Metabarcoding of eDNA detected 66% more molecular operational taxonomic units (MOTUs) than species on video. We found 66 and 43 functional entities with a single eDNA marker and videos, respectively, and higher functional richness for eDNA than videos. Despite gaps in genetic reference databases, eDNA also detected a higher fish phylogenetic diversity than videos; accumulation curves showed how 1 eDNA transect detected as much phylogenetic diversity as 25 hr of video. Environmental DNA metabarcoding can be used to affordably, efficiently, and accurately census biodiversity factors in marine systems. Although taxonomic assignments are still limited by species coverage in genetic reference databases, use of MOTUs highlights the potential of eDNA metabarcoding once reference databases have expanded.     

Distribution of organochlorine pesticides (OCs) and polychlorinated biphenyls (PCBs) in marine sediments directly exposed to wastewater from Cortiou, Marseille

Introduction

The future ??Calanque National Park?? coastlines of the Bouches-du-Rh?ne and Var departments in France, constitute one of the ten biodiversity hot spots identified in the Mediterranean basin that receives industrial and urban wastewaters discharged from Marseille and its suburbs.

Materials and methods

Organochlorine pesticides (OCs) and polychlorinated biphenyls (PCBs) were measured in sediments collected from 12 sampling sites (C1?CC12) of sewage discharge to the sea from the wastewater treatment plant of Cortiou-Marseille. This study aims to determine the extent of these compounds in the sediments and to establish the possible sources of these contaminants.

Results and discussion

Total pesticides in the sediments ranged from 1.2 to 190.6 ng g^-1 dry weight of sediment. The highest value was found at station C1, with a decreasing trend in total OC concentrations seaward. Among these compounds, the concentrations of the sum of dichlorodiphenyltrichloroethane (??DDT) were the highest, ranging from 0.7 to 114.3 ng g^-1. PCB concentrations, expressed as equivalent to Arochlor 1260, varied from 9.1 to 226.9 ng g^-1. Individually, the dominant coplanar PCB congeners CB-153, CB-138 and CB-101. Generally, PCB concentrations at stations C2, C3, C5 and C7 were higher than those at stations C10, C11 and C12. Through some pollution indices, we showed the long-term contamination input of these OCs (DDT, endosulfan, HCH and heptachlor cases) rather than a recent release resulting from degradation and long-term weathering (dieldrin, aldrin and methoxychlor cases). Occurrence of PCBs might be due to their resistance to degradation processes or/and chronic inputs.

Conclusions

By comparison with available sediment quality guideline (SQG) values, the environmental significance and toxicological implications of PCBs and OCs (i) reveal the probable adverse effects for the sediments from C1, C5, C6, C9 and (ii) confirm the adverse effect for marine biota and more particularly for benthic communities at C2?CC4, C7 and C8.     

Evaluation of a Puff Dispersion Model in Complex Terrain

California's Pacific Gas and Electric Company has many power plant operations situated in complex terrain, prominent examples being the Geysers geothermal plant in Lake and Sonoma Counties, and the Diablo Canyon nuclear plant in San Luis Obispo County. Procedures ranging from plant licensing to emergency response require a dispersion modeling capability in a complex terrain environment. This paper describes the performance evaluation of such a capability, the Pacific Gas and Electric Company Modeling System (PGEMS), a fast response Gaussian puff model with a three-dimensional wind field generator.

Performance of the model was evaluated for ground level and short stack elevated release on the basis of a special intensive tracer experiment in the complex coastal terrain surrounding the Diablo Canyon Nuclear Power Plant in San Luis Obispo County, California. The model performed well under a variety of meteorological and release conditions within the test region of 20-kilometer radius surrounding the nuclear plant, and turned in a superior performance in the wake of the nuclear plant, using a new wake correction algorithm for ground level and roof-vent releases at that location.     

Is the freshwater gammarid, Dikerogammarus villosus, a suitable sentinel species for the implementation of histochemical biomarkers?

In order to enlarge the range of potential sentinel species for the implementation of a multiple biomarker approach, spatial and monthly morphological variations of four cellular compartments and contents were assessed during two years in the hepatopancreatic caeca of the freshwater gammarid, Dikerogammarus villosus (Crustacea, Amphipoda), using histochemistry coupled to image analysis. Among the three study sites, the second one, located in a reservoir receiving the overheated and copper-contaminated waters of a nuclear power plant, was the most anthropised. During this passive biomonitoring survey, unsaturated neutral lipids were more abundant, the surface densities of the lysosomal and peroxisomal systems were, respectively less and more important, and lipofuscin granules tended to accumulate in the amphipods from the second site compared to both others. Nonetheless, in this context, the present cellular biomarker suite, analysed through an integrative approach, was not powerful enough to highlight spatial heterogeneity significantly. This may partly result from particularities in the patterns of metal accumulation and copper physiological requirements of amphipods (haemocyanin synthesis). Nevertheless, we think that the use of this Ponto-Caspian non-indigenous species in biomonitoring surveys deserves further investigation, owing to its current position in freshwater and brackish European ecosystems, considering both biomass and functioning. Cellular responses could be studied in parallel with endpoints at other levels of the biological organization to compose a more powerful biomarker suite. Furthermore, comparing biological responses to environmental stress in this invasive species and less competitive autochthonous gammarids could be of great interest.     

Iron isotopic fractionation in industrial emissions and urban aerosols

A study on tropospheric aerosols involving Fe particles with an industrial origin is tackled here. Aerosols were collected at the largest exhausts of a major European steel metallurgy plant and around its near urban environment. A combination of bulk and individual particle analysis performed by SEM–EDX provides the chemical composition of Fe-bearing aerosols emitted within the factory process (hematite, magnetite and agglomerates of these oxides with sylvite (KCl), calcite (CaCO₃) and graphite carbon). Fe isotopic compositions of those emissions fall within the range (0.08‰ < δ⁵⁶Fe < +0.80‰) of enriched ores processed by the manufacturer (−0.16‰ < δ⁵⁶Fe < +1.19‰). No significant evolution of Fe fractionation during steelworks processes is observed. At the industrial source, Fe is mainly present as oxide particles, to some extent in 3–4 μm aggregates. In the close urban area, 5 km away from the steel plant, individual particle analysis of collected aerosols presents, in addition to the industrial particle type, aluminosilicates and related natural particles (gypsum, quartz, calcite and reacted sea salt). The Fe isotopic composition (δ⁵⁶Fe = 0.14 ± 0.11‰) measured in the close urban environment of the steel metallurgy plant appears coherent with an external mixing of industrial and continental Fe-containing tropospheric aerosols, as evidenced by individual particle chemical analysis. Our isotopic data provide a first estimation of an anthropogenic source term as part of the study of photochemically promoted dissolution processes and related Fe fractionations in tropospheric aerosols.     

Comparative environmental impacts of glyphosate and conventional herbicides when used with glyphosate-tolerant and non-tolerant crops

The introduction of glyphosate-tolerant (GT) crops is expected to mitigate the environmental contamination by herbicides because glyphosate is less persistent and toxic than the herbicides used on non-GT crops. Here, we compared the environmental balances of herbicide applications for both crop types in three French field trials. The dynamic of herbicides and their metabolites in soil, groundwater and air was simulated with PRZM model and compared to field measurements. The associated impacts were aggregated with toxicity potentials calculated with the fate and exposure model USES for several environmental endpoints. The impacts of GT systems were lower than those of non-GT systems, but the accumulation in soils of one glyphosate metabolite (aminomethylphosphonic acid) questions the sustainability of GT systems. The magnitude of the impacts depends on the rates and frequency of glyphosate application being highest for GT maize monoculture and lowest for combination of GT oilseed rape and non-GT sugarbeet crops.     

Pollution-Adjusted Productivity Changes: Extending the Färe–Primont Index with an Illustration with French Suckler Cow Farms

Environmental Modeling & Assessment - Several approaches have been proposed in the literature to compute technical efficiency indices that account for bad outputs. The literature is, however,...