Contamination of Clams with Human Norovirus and a Novel Hepatitis A Virus in Cameroon

Food and Environmental Virology - Shellfish constitute an important protein source but may be contaminated by viruses from various origins. A study performed on clams collected in Cameroon showed a...     

Proposal for standardized prenatal ultrasound assessment of the fetus with congenital diaphragmatic hernia by the European reference network on rare inherited and congenital anomalies (ERNICA)

Congenital diaphragmatic hernia is a rare disease associated with high mortality and morbidity. Antenatal ultrasound screening identifies more than 70% of cases, providing the opportunity for in utero referral to a tertiary care center for expert assessment and perinatal management. Additional genetic and morphologic assessment may be used to rule out associated anomalies. In isolated cases, the outcome may be predicted prenatally by medical imaging. The combination of lung size and liver herniation is a widely accepted method to stratify fetuses into groups with an increasing degree of pulmonary hypoplasia and corresponding mortality rates. Ultrasound measurement of the observed to expected lung-to-head ratio (o/e LHR) is most widely used. The o/e LHR is an independent predictor of survival and short-term morbidity. Finally, evaluation of stomach position has recently been introduced as an indirect method to estimate severity of the disease in left-sided defects, as it has been shown to correlate with the proportion of intrathoracic liver. Herein, we propose a protocol for the standardized ultrasound assessment of fetuses with isolated CDH and individualized prediction of neonatal outcome.     

Evolution of hybrid functional imaging in bioelectromagnetics research

The field of bioelectromagnetics, consisting of the study of the interaction between electromagnetic fields and biological systems, has been rapidly expanding in the recent years. One important factor that contributes importantly to the development of this field is the continuing advances in technology allowing researchers to investigate different endpoints, or to more precisely measure changes, if any. Hybrid functional imaging is a rapidly maturing field that opens new, important horizons for bioelectromagnetics research. Indeed, unraveling the interaction mechanisms of electromagnetic fields on biological systems (with an emphasis on the brain) requires a monitoring of electrical, functional, and metabolic activity of living tissue at different temporal and spatial scales. Individual tools (e.g., electroencephalography, EEG; functional magnetic resonance imaging, fMRI) are limited in their ability to detect the effects of electromagnetic interaction at specific temporal and spatial scales, so combining these imaging methods offers a unique opportunity to provide a more comprehensive view of effects in living tissue. In this paper, we will present the different imaging techniques that are available to bioelectromagnetics researchers, including their capabilities and how they are complemented by simultaneous hybrid imaging. Future possibilities of hybrid imaging technologies are discussed.     

Calculating Ne and Ne/N in age-structured populations: a hybrid Felsenstein-Hill approach

The concept of effective population size (Ne) was developed under a discrete-generation model, but most species have overlapping generations. In the early 1970s, J. Felsenstein and W. G. Hill independently developed methods for calculating Ne in age-structured populations; the two approaches produce the same answer under certain conditions and have contrasting advantages and disadvantages. Here, we describe a hybrid approach that combines useful features of both. Like Felsenstein's model, the new method is based on age-specific survival and fertility rates and therefore can be directly applied to any species for which life table data are available. Like Hill, we relax the restrictive assumption in Felsenstein's model regarding random variance in reproductive success, which allows more general application. The basic principle underlying the new method is that age structure stratifies a population into winners and losers in the game of life: individuals that live longer have more opportunities to reproduce and therefore have a higher mean lifetime reproductive success. This creates different classes of individuals within the population, and grouping individuals by age at death provides a simple means of calculating lifetime variance in reproductive success of a newborn cohort. The new method has the following features: (1) it can accommodate unequal sex ratio and sex-specific vital rates and overdispersed variance in reproductive success; (2) it can calculate effective size in species that change sex during their lifetime; (3) it can calculate Ne and the ratio Ne/N based on various ways of defining N; (4) it allows one to explore the relationship between Ne and the effective number of breeders per year (Nb), which is a quantity that genetic estimators of contemporary Ne commonly provide information about; and (5) it is implemented in freely available software (AgeNe).     

Evidence of a 2-day periodicity of striae formation in the tropical scallop Comptopallium radula using calcein marking

The periodicity of striae formation in the tropical scallop Comptopallium radula (Indo-West Pacific Ocean) was investigated with an in situ marking technique, using the calcein fluorochrome. To minimize scallop stress caused by excessive handling, in situ benthic chambers were used for marking experiments. Once marked, scallops (shell height range: 38.4–75.8 mm) remained on site in a large benthic enclosure and were collected at regular time intervals to count new striae formed after marking, over a period of 3 months. A 3-h exposure period with calcein (150 mg l⁻¹) was sufficiently long to create a detectable mark in nearly all shells. It was, however, impossible to count the striae in 48.2% of the shells (mainly large specimens) because of a very small growth after marking. Lack of significant mortality during the experiments indicated that tested calcein concentrations were not lethal. A decrease in shell growth rate was observed after marking but the respective impacts of calcein toxicity and changes in environmental conditions could not be discriminated. Our results suggest that in situ calcein marking inside benthic chambers is suitable for shell growth studies of scallops, provided the latter are not too old. After marking, the juvenile C. radula formed an average of one stria every 2.1 days in summer. Reports of 2-day periodicity in biological rhythms are rare. Striae formation in C. radula may be controlled by an endogenous oscillator, synchronized by an environmental cue acting as a zeitgeber, such as seawater temperature or sea level pressure, both of which exhibit 2-day variations in the Pacific Ocean. As in many other scallop species, C. radula forms striae periodically under natural conditions, but this study shows that in pectinid juveniles, this periodicity can deviate from a daily cycle. These results suggest that C. radula shells have tremendous potential for recording environmental conditions during periods ranging from months to a few years and with a resolution of 2 days.     

Numerical simulation of particle-driven gravity currents

Particle-driven gravity currents frequently occur in nature, for instance as turbidity currents in reservoirs. They are produced by the buoyant forces between fluids of different density and can introduce sediments and pollutants into water bodies. In this study, the propagation dynamics of gravity currents is investigated using the FLOW-3D computational fluid dynamics code. The performance of the numerical model using two different turbulence closure schemes namely the renormalization group (RNG) ${k-\epsilon}$ scheme in a Reynold-averaged Navier-Stokes framework (RANS) and the large-eddy simulation (LES) technique using the Smagorinsky scheme, were compared with laboratory experiments. The numerical simulations focus on two different types of density flows from laboratory experiments namely: Intrusive Gravity Currents (IGC) and Particle-Driven Gravity Currents (PDGC). The simulated evolution profiles and propagation speeds are compared with laboratory experiments and analytical solutions. The numerical model shows good quantitative agreement for predicting the temporal and spatial evolution of intrusive gravity currents. In particular, the simulated propagation speeds are in excellent agreement with experimental results. The simulation results do not show any considerable discrepancies between RNG ${k-\epsilon}$ and LES closure schemes. The FLOW-3D model coupled with a particle dynamics algorithm successfully captured the decreasing propagation speeds of PDGC due to settling of sediment particles. The simulation results show that the ratio of transported to initial concentration C _o /C _i by the gravity current varies as a function of the particle diameter d _s . We classify the transport pattern by PDGC into three regimes: (1) a suspended regime (d _s is less than about 16 μm) where the effect of particle deposition rate on the propagation dynamics of gravity currents is negligible i.e. such flows behave like homogeneous fluids (IGC); (2) a mixed regime (16 μm < d _s <40 μm) where deposition rates significantly change the flow dynamics; and (3) a deposition regime (d _s ?> 40 μm) where the PDGC rapidly loses its forward momentum due to fast deposition. The present work highlights the potential of the RANS simulation technique using the RNG ${k-\epsilon}$ turbulence closure scheme for field scale investigation of particle-driven gravity currents.