Improved direct molecular diagnosis and rapid fetal sexing

Adaptations of the techniques of modern molecular biology to prenatal diagnosis has opened new avenues for the detection of genetic diseases. We have taken advantage of the rapid adhesion of colony forming cells in cultured amniotic fluid samples to develop an improved method for molecular diagnosis. By employing the cell adherence regime sickle cell diagnosis using Mst II can be undertaken directly. In addition, hybridization with a cloned repetitive sequence that is of Y origin and has limited autosomal homology permits rapid fetal sexing in 3 to 4 days without compromising conventional cytogenetic or biochemical analysis. This combination of techniques provides a useful adjunct to convential prenatal genetic diagnosis in the second trimester.     

Availability and Extraction of Forest Products in Managed and Primary Forest around a Dayak Village in West Kalimantan, Indonesia

We examined the density and abundance of marketable products in managed forest (rubber gardens, fruit gardens, and dry rice fallows) and in primary forest surrounding the Dayak village of Kembera, near Gunung Palung National Park, West Kalimantan, Indonesia. We calculated the proportion of trees that were marketable and useful for local consumption by counting and identifying trees in each managed forest type, and we documented extraction of products through interviews. Villagers harvested four marketable tree products: tengkawang seeds ( Shorea stenoptera ), durian fruits (various Durio spp.), rubber ( Hevea brasiliensis ), and timber, especially Bornean ironwood ( Eusideroxylon zwageri ). We inventoried trees at least 20 cm diameter at breast height (dbh) of marketed species from 0.4-ha plots in primary forest ( n = 8) and from 0.1-ha plots in each managed forest type ( n = 10–11). With the exception of timber, the density of trees producing a marketable product was significantly higher in the forest type managed for that product than the density of the marketed species, or of similar wild species, in primary forest. Total abundance (product of density and available area) of durian and tengkawang was greater in primary forest; however, villagers gathered these products only from managed forest. We infer from this choice a greater efficiency of harvesting from trees in dense stands near the village. Historically, this choice resulted in deliberate development of fruit gardens in preference or in addition to gathering from the more distant, primary forest. Because of low product density in primary forest, extractive forest reserves or buffer zones designed to encourage the production of fruits such as tengkawang or durian may not provide a sufficient incentive for the protection of primary forest around Kembera and other Dayak villages near Gunung Palung National Park.     

Advanced multivariate analysis to assess remediation of hydrocarbons in soils

Accurate monitoring of degradation levels in soils is essential in order to understand and achieve complete degradation of petroleum hydrocarbons in contaminated soils. We aimed to develop the use of multivariate methods for the monitoring of biodegradation of diesel in soils and to determine if diesel contaminated soils could be remediated to a chemical composition similar to that of an uncontaminated soil. An incubation experiment was set up with three contrasting soil types. Each soil was exposed to diesel at varying stages of degradation and then analysed for key hydrocarbons throughout 161 days of incubation. Hydrocarbon distributions were analysed by Principal Coordinate Analysis and similar samples grouped by cluster analysis. Variation and differences between samples were determined using permutational multivariate analysis of variance. It was found that all soils followed trajectories approaching the chemical composition of the unpolluted soil. Some contaminated soils were no longer significantly different to that of uncontaminated soil after 161 days of incubation. The use of cluster analysis allows the assignment of a percentage chemical similarity of a diesel contaminated soil to an uncontaminated soil sample. This will aid in the monitoring of hydrocarbon contaminated sites and the establishment of potential endpoints for successful remediation.     

Mainstreaming the social sciences in conservation

Despite broad recognition of the value of social sciences and increasingly vocal calls for better engagement with the human element of conservation, the conservation social sciences remain misunderstood and underutilized in practice. The conservation social sciences can provide unique and important contributions to society's understanding of the relationships between humans and nature and to improving conservation practice and outcomes. There are 4 barriers—ideological, institutional, knowledge, and capacity—to meaningful integration of the social sciences into conservation. We provide practical guidance on overcoming these barriers to mainstream the social sciences in conservation science, practice, and policy. Broadly, we recommend fostering knowledge on the scope and contributions of the social sciences to conservation, including social scientists from the inception of interdisciplinary research projects, incorporating social science research and insights during all stages of conservation planning and implementation, building social science capacity at all scales in conservation organizations and agencies, and promoting engagement with the social sciences in and through global conservation policy‐influencing organizations. Conservation social scientists, too, need to be willing to engage with natural science knowledge and to communicate insights and recommendations clearly. We urge the conservation community to move beyond superficial engagement with the conservation social sciences. A more inclusive and integrative conservation science—one that includes the natural and social sciences—will enable more ecologically effective and socially just conservation. Better collaboration among social scientists, natural scientists, practitioners, and policy makers will facilitate a renewed and more robust conservation. Mainstreaming the conservation social sciences will facilitate the uptake of the full range of insights and contributions from these fields into conservation policy and practice.     

Application of passive soil gas technology to determine the source and extent of a PCE groundwater plume in an urban environment

In situations where groundwater supplies have been impacted by volatile organic compounds (VOCs), such as tetrachloroethene (PCE), and the source has not been identified, the costs to identify the source and plume migration patterns may be extremely high. The costs for an investigation increase with the number and depth of borings and the number of samples that are collected and analyzed. An environmental investigator and the Arizona Department of Environmental Quality (ADEQ) have successfully utilized passive soil gas (PSG) surveys in Arizona to cost‐effectively investigate VOC impacts to groundwater and identify potential sources of impact. PSG surveys are minimally intrusive, and more samples can be collected for the same cost when compared to active soil gas surveys and conventional soil and groundwater sampling programs. The result is a surficial representation of the contaminant plume and the location of “hot spots,'' which are the potential sources. This provides a better understanding of the nature and extent of the impact and allows for a focused subsurface investigation, which subsequently reduces drilling and sampling costs. © 2008 Wiley Periodicals, Inc.     

Assessing exposure to allied ground troops in the Vietnam War: A quantitative evaluation of the Stellman Exposure Opportunity Index model

The Exposure Opportunity Index (EOI) is a proximity-based model developed to estimate relative exposure of ground troops in Vietnam to aerially applied herbicides. We conducted a detailed quantitative evaluation of the EOI model by using actual herbicide spray missions isolated in time and space. EOI scores were calculated for each of 36 hypothetical receptor location points associated with each spray mission for 30 herbicide missions for two time periods – day of herbicide application and day 2–3 post-application. Our analysis found an enormous range of EOI predictions with 500–1000-fold differences across missions directly under the flight path. This quantitative examination of the EOI suggests that extensive testing of the model’s code is warranted. Researchers undertaking development of a proximity-based exposure model for epidemiologic studies of either Vietnam veterans or the Vietnamese population should conduct a thorough and realistic analysis of how precise and accurate the model results are likely to be and then assess whether the model results provide a useful basis for their planned epidemiologic studies.     

Relationship of surface changes to metal leaching from tungsten composite shot exposed to three different soil types

Physical changes that occur on the surface of fired shots due to firing and impact with soil may increase the dissolution of muniton metals. Increased metal dissolution could potentially increase metal transport and leaching, affecting metal concentrations in surface and groundwater. This research describes the relationship between the surface changes on fired tungsten-nickel-iron (94% W:2% Ni:4% Fe) composite shots and metals leaching from those shots. Tungsten composite shot was fired into, and aged in, three soil types (Silty Sand, Sandy Clay, and Silt) in mesoscale rainfall lysimeters to simulate live-fire conditions and subsequent interactions between the metals of the composite and soil. Leachate, runoff, and soil samples were collected from the lysimeters and analyzed for metal content. The shots were analyzed using scanning electron microscopy (SEM) to evaluate surface changes. SEM results indicated that a soil’s particle size distribution initially affected the amount of metal that was sheared from the surface of the fired W-composite shots. Shearing was greatest in soils with larger soil particles (sand and gravel); shearing was least in soils composed of small soil particles (fines). Increased metallic shearing from the shot’s surface was associated with increased W dissolution, compared to controls, following a simulated 1 year soil aging.     

Optimizing line intercept sampling and estimation for feral swine damage levels in ecologically sensitive wetland plant communities

Ecological sampling can be labor intensive, and logistically impractical in certain environments. We optimize line intercept sampling and compare estimation methods for assessing feral swine damage within fragile wetland ecosystems in Florida. Sensitive wetland sites, and the swine damage within them, were mapped using GPS technology. Evenly spaced parallel transect lines were simulated across a digital map of each site. The length of each transect and total swine damage under each transect were measured and percent swine damage within each site was estimated by two methods. The total length method (TLM) combined all transects as a single long transect, dividing the sum of all damage lengths across all transects by the combined length of all transect lines. The equal weight method (EWM) calculated the damage proportion for each transect line and averaged these proportions across all transects. Estimation was evaluated using transect spacings of 1, 3, 5, 10, 15, and 20 m. Based on relative root mean squared error and relative bias measures, the TLM produced higher quality estimates than EWM at all transect spacings. Estimation quality decreased as transect spacing increased, especially for TLM. Estimation quality also increased as the true proportion of swine damage increased. Diminishing improvements in estimation quality as transect spacings decreased suggested 5 m as an optimal tradeoff between estimation quality and labor. An inter-transect spacing of 5 m with TLM estimation appeared an optimal starting point when designing a plan for estimating swine damage, with practical, logistical, economic considerations determining final design details.