Fluorescence in situ hybridization (FISH) for rapid detection of aneuploidy: experience in 911 prenatal cases†

Fluorescence in situ hybridization (FISH) was performed with probes specific for chromosomes 13, 18, 21, X and Y on 911 of 11123 (8.2%) amniotic fluid samples submitted to the present authors' laboratory for cytogenetic analysis over an 8-year period. Altogether 3516 hybridizations were performed with an interpretable FISH result on all chromosomes requested in 884/911 (97%) of cases. An uninformative FISH result occurred in 44 hybridizations among 27 cases (3%). Of a total of 89 karyotypically proven cases with aneuploidy that might have been detected by FISH, the overall detection rate was 84%. An inconclusive or incomplete FISH result occurred in 9/89 (10%) of these proven aneuploid cases. In the remaining 80 informative proven aneuploid cases, correct detection of aneuploidy was accomplished in 75/80 (94%) of samples. A false-negative result occurred in the remaining 5/80 (6%) of such informative cases. Eighteen cases had karyotypically proven abnormalities that could not have been detected by the targeted FISH. Aside from these 18 cases, FISH allowed correct detection of normal disomy in 785/804 (98%) of such cases. An incomplete FISH result occurred in 18 normal disomic cases. There was a single possible ‘false-positive’ FISH result for chromosome 21. Interphase FISH analysis of uncultured amniotic fluid cells has been shown to be a useful laboratory tool for rapid fetal aneuploidy screening during pregnancy. As with all clinical laboratory diagnostic tests, incomplete or inconclusive results (or even interpretive errors) occur in a small percentage of cases. Nevertheless, FISH results accompanied by other data and by appropriate counseling provide clinicians and patients with valuable information for clinical decision-making surrounding family planning and pregnancy management. Copyright © 2001 John Wiley & Sons, Ltd.     

Nitrogen management in bioreactor landfills

One scenario for long-term nitrogen management in landfills is ex situ nitrification followed by denitrification in the landfill. The objective of this research was to measure the denitrification potential of actively decomposing and well decomposed refuse. A series of 10-l reactors that were actively producing methane were fed 400 mg NO3-N /l every 48 h for periods of 19-59 days. Up to 29 nitrate additions were either completely or largely depleted within 48 h of addition and the denitrification reactions did not adversely affect the leachate pH. Nitrate did inhibit methane production, but the reactors recovered their methane-producing activity with the termination of nitrate addition. In well decomposed refuse, the nitrate consumption rate was reduced but was easily stimulated by the addition of either acetate or an overlayer of fresh refuse. Addition of acetate at five times the amount required to reduce nitrate did not lead to the production of NH4+ by dissimilatory nitrate reduction. The most probable number of denitrifying bacteria decreased by about five orders of magnitude during refuse decomposition in a reactor that did not receive nitrate. However, rapid denitrification commenced immediately with nitrate addition. This study shows that the use of a landfill as a bioreactor for the conversion of nitrate to a harmless byproduct, nitrogen gas, is technically viable.     

Heavy metal concentrations in molluscs from the Senegal coast

Bivalve molluscs from the Western coast of Senegal were sampled and measured for their cadmium, copper and zinc concentrations. This part of Africa has not been studied as regards heavy metal concentrations in the molluscs. The collected species are two small African bivalve molluscs, living in the sand: Cardita ajar and Dosinia isocardia; the African mussel Perna perna which is the only mussel of this genus in the Western coast of Africa and the oyster Crassostrea gasar, which lives in mangroves attached to the rhizophores, in the intertidal zone. C. gasar and C. ajar present higher cadmium concentrations, respectively 6.82+/-0.54 and 13.77+/-0.80 microg Cd/g (d.w.) than the two other species (D. isocardia: 3.88+/-0.31 microg/g and P. perna 2.37+/-0.22 microg/g. Copper and zinc concentrations are in the range of the published values for C. gasar and P. perna collected elsewhere in Africa. The results suggest that cadmium may be present in high concentrations in Senegalese waters where upwellings occur.     

Brush and Trunk Burning Plant in the City of Detroit

For many years the City of Detroit was a flagrant violator of its own air pollution laws by the indiscriminate open burning of Dutch Elm diseased trees, brush and trunks. Cited for violation under the city’s air pollution control code as well as under threat of a private legal suit, the City administration approved a $250,000 expenditure for the design and installation of a unique six ton per hour brush and trunk burning incinerator plant. This plant was conceived by engineering personnel of the City Engineer’s office in consultation with engineering staff members of the Air Pollution Control Bureau. Information is provided on the basic plant layout and design, wet fly ash collector configuration, operating and maintenance experience, and recommended changes for any future similar installations. Stack emission test data are also reported. Due to the success of this plant, a similar plant is in the process of being constructed in another part of the city upon completion of which the City of Detroit will no longer be required to burn brush and trunk waste in open fires. The new plant has incorporated some design changes which should enable it to perform even more efficiently than the prototype unit and handle a wider variety of waste such as Christmas trees and wrecking waste. Because this plant is the first of its kind in the U. S. and the disposal of Dutch Elm diseased brush and trunks is a major problem in many urban areas, the experience of the City of Detroit should be of vital interest to many municipal officials.     

Observations on the methane oxidation capacity of landfill soils

The objective of this study was to determine the role of CH₄ loading to a landfill cover in the control of CH₄ oxidation rate (g CH₄ m⁻² d⁻¹) and CH₄ oxidation efficiency (% CH₄ oxidation) in a field setting. Specifically, we wanted to assess how much CH₄ a cover soil could handle. To achieve this objective we conducted synoptic measurements of landfill CH₄ emission and CH₄ oxidation in a single season at two Southeastern USA landfills. We hypothesized that percent oxidation would be greatest at sites of low CH₄ emission and would decrease as CH₄ emission rates increased. The trends in the experimental results were then compared to the predictions of two differing numerical models designed to simulate gas transport in landfill covers, one by modeling transport by diffusion only and the second allowing both advection and diffusion. In both field measurements and in modeling, we found that percent oxidation is a decreasing exponential function of the total CH₄ flux rate (CH₄ loading) into the cover. When CH₄ is supplied, a cover’s rate of CH₄ uptake (g CH₄ m⁻² d⁻²) is linear to a point, after which the system becomes saturated. Both field data and modeling results indicate that percent oxidation should not be considered as a constant value. Percent oxidation is a changing quantity and is a function of cover type, climatic conditions and CH₄ loading to the bottom of the cover. The data indicate that an effective way to increase the % oxidation of a landfill cover is to limit the amount of CH₄ delivered to it.