Characterization of microbial communities from coastal waters using microarrays

Molecular methods, including DNA probes, were used to identify and enumerate pathogenic Vibrio species in the Chesapeake Bay; our data indicated that Vibrio vulnificus exhibits seasonal fluctuations in number. Our work included a characterization of total microbial communities from the Bay; development of microarrays that identify and quantify the diversity of those communities; and observation of temporal changes in those communities. To identify members of the microbial community, we amplified the 16S rDNA gene from community DNA isolated from a biofilm sample collected from the Chesapeake Bay in February, 2000. The resultant 75 sequences were 95% or more similar to 7 species including two recently described Shewanella species, baltica and frigidimarina, that have not been previously isolated from the Chesapeake. When the genera of bacteria from biofilm after culturing are compared to those detected by subcloning amplified 16S fragments from community DNA, the cultured sample exhibited a strong bias. In oysters collected in February, the most common bacteria were previously unknown. Based on our 16S findings, we are developing microarrays to detect these and other microbial species in these estuarine communities. The microarrays will detect each species using four distinct loci, with the multiple loci serving as an internal control. The accuracy of the microarray will be measured using sentinel species such as Aeromonas species, Escherichia coli, and Vibrio vulnificus. Using microarrays, it should be possible to determine the annual fluctuations of bacterial species (culturable and non-culturable, pathogenic and non-pathogenic). The data may be applied to understanding patterns of environmental change; assessing the health of the Bay; and evaluating the risk of human illness associated with exposure to and ingestion of water and shellfish.     

Sediment quality in the Douro river estuary based on trace metal contents, macrobenthic community and elutriate sediment toxicity test (ESTT)

The aim of this study was to evaluate the sediment quality in the mesotidal Douro River estuarine environment, in order to identify areas where sediment contamination could cause ecosystem degradation. Samples were obtained in five locations and sediment characterised for grain size, total organic matter, total-recoverable metals (Al, Fe, Cu, Pb, Cr, Ni, Cd, Zn and Mn), as well as acid volatile sulfide (AVS) and simultaneously extracted metals (SEM). In situ effects were evaluated by examining the macrobenthic community structure. An elutriate sediment toxicity test (ESTT) was used to estimate the amount of metals and nutrients that could be exchanged with the water column through resuspension, and its positive or negative effects on the growth of the micro-alga Emiliania huxleyi in a 10 day test. Anthropogenic metal contamination was identified at the north bank of the Douro estuary, with deleterious effects on the macrobenthic community, namely decrease in number of species and diversity. This contamination could possibly also be toxic for water column organisms, in case of resuspension, as shown by the ESTT. Sediments from the salt marsh at the south bank showed an impoverished macrobenthic community and elutriate toxicity, which appeared to be due to anaerobic conditions. This study clearly shows the usefulness of the ESST approach to assess the biological effect of resuspension of estuarine sediments.     

Assessment of Metal Contamination in Doñana National Park (Spain) using Crayfish (Procamburus Clarkii)

Water quality assessment in the Aznalcollar area was attempted using multivariate methods based on heavy metal concentrations in red swamp crayfish (Procamburus clarkii). Trace levels of four heavy metals, copper (Cu), zinc (Zn), cadmium (Cd) and lead (Pb), were detected in crayfish from eleven different stations. Principal component analysis (PCA) highlighted a gradient of contamination between the sampling stations. Cluster analysis (CA) distinguished three groups of stations. Discriminant analysis also differentiated three groups. The group centroids of the first discriminant function were used to devise an index that varies according to the source of the crayfish. These standardized values are proposed for use as a water quality index. The ability of this index to successfully predict environmental quality was proved with random samples.     

Risk assessment of water pollutants

The sources of toxic xenobiotics and different factors such as ecological diversity, differences in comparative anatomy, physiology and biochemistry, food chain variation, interrelationship within species and life span, etc., are considered during risk assessment of pollutants, and their impact on aquatic ecotoxicology is identified. A fugacity and multimedia compartment model is suggested, based on toxicodynamic (toxicity of the chemical) and toxicokinetic (metabolism of the chemical) considerations to predict and screen the behaviour of pollutants quantitatively in the aquatic environment. The significance of the risk analysis approach in anticipatory actions and regulation of pollution levels is discussed.     

Monitoring the condition of the Canadian forest environment: The relevance of the concept of ‘ecological indicators’

The Canadian forest environment is characterized by high spatial and temporal variability, especially in the west. Our forests vary according to climate, landform, and surficial geology, and according to the type, intensity, extent of, and the time since the last disturbance. Most Canadian forests have had a history of repeated acute, episodic disturbance from fire, insects, wind, diseases and/or logging, with a frequency of disturbance varying from a few decades to many centuries. These sources of variability have resulted in a complex and continually changing mosaic of forest conditions and stages of successional development.Monitoring the quality of this dynamic forested landscape mosaic is extremely difficult, and in most cases the concept of a relatively simple index of forest ecosystem quality or condition (i.e. an ecological indicator) is probably inappropriate. Such ecological indicators are better suited for monitoring chronic anthropogenically induced disturbances that are continuous in their effect (e.g. acid rain, heavy metal pollution, air pollution, and the greenhouse effect) in ecosystems that, in the absence of such chronic disturbance, exhibit very slow directional change (e.g. lakes, higher order streams and rivers). Monitoring the effects of a chronic anthropogenic disturbance to forest ecosystems to determine if it is resulting in a sustained, directional alteration of environmental quality will require a definition of the expected pattern of episodic disturbance and recovery therefrom (i.e. patterns of secondary succession in the absence of the chronic disturbance). Only when we have such a temporal fingerprint of forest ecosystem condition for normal patterns of disturbance and recovery can we determine if the ecosystem condition is being degraded by chronic human-induced alteration of the environment. Thus, degradation is assessed in terms of deviations from the expected temporal pattern of conditions rather than in terms of an instantaneous assessment of any particular condition. The concept of ecological rotation (the time for a given ecosystem to recover from a given disturbance back to some defined successional condition) is useful in the definition of these temporal fingerprints. This requires information on the intensity of disturbance, the frequency of disturbance, and the rate of successional recovery. Only when all three of these are known or estimated can statements be made as to whether the ecosystem is in a longterm sustainable condition or not.The somewhat overwhelming complexity of this task has led forest ecologists to use ecosystem-level computer simulation models. Appropriately structured and calibrated models of this type can provide predictions of the overall temporal patterns of ecosystem structure and functions that can be expected to accompany a given frequency and character of episodic disturbance. Such models can also be used to examine the long-term consequences of chronic disturbances such as acid rain and climatic change. Predictive ecosystem-level models should be used in conjunction with some method of stratifying the inherent spatial biophysical variability of the forest environment, such as the biogeoclimatic classification system of British Columbia.     

Measurement of atmospheric concentrations of common household pesticides: A pilot study

Air concentrations of 28 of the most commonly used household pesticides were measured inside nine homes in Jacksonville, Florida, and compared with corresponding outdoor levels. The households selected were sorted into three categories according to the degree of pesticide indoor usage. Personal air monitoring was also performed on one resident of each household by means of a portable sampler, which was kept with the person at all times. Five of the pesticides were found in the air inside of the majority of the homes at concentrations as high as 15 gm^–3 (average concentrations, 12 ngm^–3 to 2.4 gm^–3). Indoor levels were generally one to two ordrrs of magnitude higher than surrounding outdoor air levels and personal air measurements were within ± 50% of corresponding indoor values. All samples were collected over 24-hr periods on polyurethane foam and analyzed by capillary colum gas chromatography with mass spectrometric and/or electron capture detection.     

Estimating means and variances: The comparative efficiency of composite and grab samples

This paper compares the efficiencies of two sampling techniques for estimating a population mean and variance. One procedure, called grab sampling, consists of collecting and analyzing one sample per period. The second procedure, called composite sampling, collectsn samples per period which are then pooled and analyzed as a single sample. We review the well known fact that composite sampling provides a superior estimate of the mean. However, it is somewhat surprising that composite sampling does not always generate a more efficient estimate of the variance. For populations with platykurtic distributions, grab sampling gives a more efficient estimate of the variance, whereas composite sampling is better for leptokurtic distributions. These conditions on kurtosis can be related to peakedness and skewness. For example, a necessary condition for composite sampling to provide a more efficient estimate of the variance is that the population density function evaluated at the mean (i.e.f()) be greater than . If , then a grab sample is more efficient. In spite of this result, however, composite sampling does provide a smaller estimate of standard error than does grab sampling in the context of estimating population means.     

Immunity in children with exposure to environmental lead: II. Effects on humoral immunity

Lead has been found to depress the immune system in animal studies at levels far below those responsible for overt toxicity. Literature studies in animal systems most clearly showed an effect of lead on response to a specific immunogenic stimulus. Data are sparse concerning the effects of lead on the immune system in the human population at greatest risk for exposure-children up to six years of age. This portion of the Phase I study reports concentrations of IgG, IgM, IgA, and IgE, as well as antibody titers to the specific antigenic stimuli provided by the vaccines against diphtheria, tetanus, and Rubella. The study population consisted of a group of 193 children, ages 9 months to 6 years, who participate in the WIC (Women, Infants and Children) and Lead Poisoning Prevention Programs in the urban area of Springfield-Greene County Missouri. Blood lead levels ranged from 1 to 50 g dL^–1. Total Ig levels were determined and the data were analysed. No consistent significant differences were observed among the risk categories in the five age groups examined. A single Ig class in each of three age groups showed apparent significant differences among the various risk categories, but these differences were not correlated with blood lead. An analysis of specific antibody titers to diphtheria, tetanus, and Rubella was performed. Regression analyses of current data in Phase I of this study suggest a detrimental effect of lead on the antibody titres to diphtheria and Rubella.     

Interactions between copper and cadmium modify metal organ distribution in mature tilapia, Oreochromis mossambicus

Sexually mature female tilapia were exposed to sublethal concentrations of waterborne Cu and/or Cd over 6 days, and subsequent body concentrations of these metals were determined in several organs. The results show that the distribution of Cu and Cd was metal and organ specific. This is demonstrated, for example, by the observation that in tilapia, Cu exposure did not result in Cu accumulation in the liver, whereas in the intestinal wall, notably high concentrations of Cu and Cd were measured in metal exposed fish. In addition to single metal exposed fish, we also determined Cu and Cd body distribution in Cu?Cd co-exposed fish. The observed interactions in metal accumulation were most pronounced in the organs of fish exposed to low, environmentally realistic, metal concentrations.     

Linear least squares method for time series analysis with an application to a methane time series

A simple method of time series analysis, based upon linear least squares curve fitting, is developed. The method's advantages and disadvantages are discussed, and an example is presented using the Vostok Core methane record.