Utilizing pyrosequencing and quantitative PCR to characterize fungal populations among house dust samples

Molecular techniques are an alternative to culturing and counting methods in quantifying indoor fungal contamination. Pyrosequencing offers the possibility of identifying unexpected indoor fungi. In this study, 50 house dust samples were collected from homes in the Yakima Valley, WA. Each sample was analyzed by quantitative PCR (QPCR) for 36 common fungi and by fungal tag-encoded flexible (FLX) amplicon pyrosequencing (fTEFAP) for these and additional fungi. Only 24 of the samples yielded amplified results using fTEFAP but QPCR successfully amplified all 50 samples. Over 450 fungal species were detected by fTEFAP but most were rare. Twenty-two fungi were found by fTEFAP to occur with at least an average of ≥0.5% relative occurrence. Many of these fungi seem to be associated with plants, soil or human skin. Combining fTEFAP and QPCR can enhance studies of fungal contamination in homes.     

An international survey of decabromodiphenyl ethane (deBDethane) and decabromodiphenyl ether (decaBDE) in sewage sludge samples

Decabromodiphenyl ethane (deBDethane) is an additive flame retardant marketed as a replacement for decabromodiphenyl ether (decaBDE). The structures of the two chemicals are similar, and hence deBDethane may also become an environmental contaminant of concern. Environmental data on deBDethane are scarce. Since sewage sludge is an early indicator of leakage of these chemicals into the environment, an international survey of deBDethane and decaBDE levels in sludge was conducted. Samples were collected from 42 WWTPs in 12 different countries and analyzed with GC/LRMS. DeBDethane was present in sludge from all countries and may therefore be a worldwide concern. The levels of deBDethane in sludge samples from the Ruhr area of Germany were the highest so far reported in the literature (216 ng g⁻¹ d.wt.). The [deBDethane]/[decaBDE] quotient for the whole data set ranged from 0.0018 to 0.83. High ratios were found in and around Germany where deBDethane imports are known to have been high and substitution of decaBDE with deBDethane is likely to have occurred. Low ratios were found in the USA and the UK, countries that have traditionally been large users of decaBDE. An estimate of the flux of deBDEthane from the technosphere via WWTPs to the environment within the European Union gave 1.7 ± 0.34 mg annually per person. The corresponding value for decaBDE was 41 ± 22 mg annually per person.     

Fixed wavelength fluorescence to detect PAH metabolites in fish bile: Increased statistical power with an alternative dilution method

Polyaromatic hydrocarbons (PAHs) are a group of environmental toxicants mainly emitted from diffuse sources. Fixed wavelength fluorescence of fish bile is a simple screening method that allows environmental monitoring of PAH exposure to fish. One drawback with this method is that the results can be biased by the presence of a so-called inner filter effect. This effect can be reduced by dilution of the bile samples. However, bile samples differ in density and extensive dilution may cause increased measurement error. An alternative method is to adjust the dilution rate to the density of each bile sample. Here, both methods have been applied to bile samples collected from caged rainbow trout. The bile density was estimated using biliverdin. The results show that the variance within experimental groups is reduced when the dilution rate is adjusted to the bile density, resulting in increased statistical power to detect differences when applied for environmental monitoring.     

Use of Ordination Techniques to Follow Community Succession from Oil Impact to Recovery in the Field

Much effort has been directed toward elucidating pollution effects on marine benthic communities (Pearson and Rosenberg, 1978; Sanders et al., 1980; NAS 1985). Less effort has been directed at methods of data analysis which will identify distribution patterns and relationships between communities. Traditional community structure summary parameters such as species richness and various indices of diversity utilize only part of the information contained in a data set and are not very useful in elucidating relationships between communities of animals.     

MEAN AREAL PRECIPITATION FOR DAILY HYDROLOGIC MODELING IN MOUNTAINOUS REGIONS1

ABSTRACT: A procedure using detrended kriging has been developed to calculate daily values of mean areal precipitation (MAP) for input to hydrologic models. The important features of this procedure that overcome weaknesses in existing MAP procedures are: (1) specific precipitation-elevation relationships are determined for each time period as opposed to using relationships based on climatological averages, (2) spatial variability is incorporated by estimating precipitation for each grid cell over a watershed, (3) the spatial correlation structure of precipitation is explicitly modeled, and (4) station weights for precipitation estimates are determined objectively and optimally. Detailed cross-validation testing of the procedure was done for the Reynolds Creek research watershed in southwestern Idaho. The procedure is suitable for use in operational streamflow forecasting.     

Field assessment of oxytetracycline exposure to the freshwater macrophytes Egeria densa Planch. and Ceratophyllum demersum L

In a microcosm study, two aquatic macrophytes, Egeria densa and Ceratophyllum demersum were exposed to nominal concentrations of 0, 5, 20, 50, and 250 microg/L oxytetracycline (n=3), plus 20 microg/L oxytetracycline amended with additional nitrogen (N) and phosphorus (P). Responses were monitored bi-weekly over a six-week exposure period. Both plant species exhibited a significant decline in growth in the 250 microg/L oxytetracycline and the N- and P-amended units. Decreased light penetration resulting from accumulating oxytetracycline by-products appears to be the primary modifier in the growth of these plants. Increased susceptibility to oxytetracycline exposure was noted in some paired plantings (e.g., E. densa root development), relative to individual plants in these treatments, however, no clear explanation for this response is available. Based on the toxicity data generated in this study, we estimate that current concentrations of oxytetracycline in freshwater environments do not pose a direct risk to E. densa and C. demersum.     

Improving dialogue among researchers,local and indigenous peoples and decision-makers to address issues of climate change in the North

Ambio - The Circumpolar North has been changing rapidly within the last decades, and the socioeconomic systems of the Eurasian Arctic and Siberia in particular have displayed the most dramatic...     

Uptake and metabolism of two amino acids by anaerobic microorganisms in four diverse salt-marsh soils

The anaerobic microbial uptake of alanine and aspartic acid was determined in 4 diverse salt-marsh soils (tall and short Spartina alterniflora, creek bank, and mud flat). Uptake in soil slurries was determined by the radioisotopic tracer technique at one substrate concentration (<250 pmoles cm^-3). Dissolved free alanine and aspartic acid concentrations in the interstitial nutrient pool ranged from approximately 1 to 500 pmoles cm^-3. In the short S. alterniflora soil, maximum microbial uptake of alanine was found at a depth of 10 cm (8.32 pmoles cm^-3 h^-1); in the tall S. alterniflora soil maximum uptake was at 20 cm (23.4 pmoles cm^-3 h^-1). The utilization of aspartic acid appeared constant over the depth interval investigated (0 to 60 cm). The turnover times of alanine and aspartic acid in the tall and short S. alterniflora soils ranged from 5 to 25 h and 40 to 100 h, respectively. The percent of the labeled alanine and aspartic acid taken up that was mineralized by tall and short s. alterniflora microbenthos ranged from 20 to 50% and 5 to 20%, respectively.     

Haloacetic acids in the aquatic environment. Part II: ecological risk assessment

Haloacetic acids (HAAs) are environmental contaminants found in aquatic ecosystems throughout the world as a result of both anthropogenic and natural production. The ecological risk posed by these compounds to organisms in freshwater environments, with a specific focus on aquatic macrophytes, was characterized. The plants evaluated were Lemna gibba, Myriophyllum spicatum and M. sibiricum and the HAAs screened were monochloroacetic acid (MCA), dichloroacetic acid (DCA), trichloroacetic acid (TCA), trifluoroacetic acid (TFA) and chlorodifluoroacetic acid (CDFA). Laboratory toxicity data formed the basis of the risk assessment, but field studies were also utilized. The estimated risk was calculated using hazard quotients (HQ), as well as effect measure distributions (EMD) in a modified probabilistic ecological risk assessment. EMDs were used to estimate HAA thresholds of toxicity for use in HQ assessments. This threshold was found to be a more sensitive measure of low toxicity than the no observed effect concentrations (NOEC) or the effective concentration (EC10). Using both deterministic and probabilistic methods, it was found that HAAs do not pose a significant risk to freshwater macrophytes at current environmental concentrations in Canada, Europe or Africa for both single compound and mixture exposures. Still, HAAs are generally found as mixtures and their potential interactions are not fully understood, rendering this phase of the assessment uncertain and justifying further effects characterization. TCA in some environments poses a slight risk to phytoplankton and future concentrations of TFA and CDFA are likely to increase due to their recalcitrant nature, warranting continued environmental surveillance of HAAs.     

Effects of a mixture of tetracyclines to Lemna gibba and Myriophyllum sibiricum evaluated in aquatic microcosms

The impact of a mixture of oxytetracycline, chlortetracycline, tetracycline and doxycycline on Myriophyllum sibiricum and Lemna gibba was investigated using fifteen 12,000-L microcosms (k=5, n=3). Significant concentration-response relationships were only found for M. sibiricum, where dry mass was 69, 47, 30, and 7% of controls at respective treatment concentrations of 0.080, 0.218, 0.668, and 2.289 micromol/L. Somatic endpoints were strongly and negatively correlated with percent light transmission, except plant length, which was positively correlated. Treated microcosms experienced a reduction in the percent of surface irradiance penetrating the water column as high as 99.8% at a depth of 70 cm, relative to controls. Position relative to the water column was likely responsible for the differential effects observed between floating (L. gibba) and submerged (M. sibiricum) species of macrophytes. A hazard quotient assessment of the lowest EC10 value indicated significant risk, exceeding the critical HQ value, but not the lowest EC25 value.