DNA提取方法对活性污泥微生物多样性PCR-DGGE检测的影响

评价超声波法、2种基于SDS的裂解法、改进的化学裂解法、微波法和冻融 玻璃珠 溶菌酶 SDS等6种DNA提取方法对活性污泥微生物多样性PCR-DGGE检测的影响.结果表明,2种不同的DNA纯化方式(溶液和胶纯化)及PCR扩增方式(直接和巢式PCR)对DGGE结果没有明显的影响,但不同的DNA提取方法对DGGE结果有明显的影响,其中2种基于SDS裂解法的DGGE条带较多,其提取的DNA产量(14.85μg/g湿重)和纯度(OD260:OD280＞1.80)也最高;改进的化学裂解法和微波法次之;超声波法、冻融 玻璃珠 溶菌酶 SDS法较少.研究表明,DNA提取方法是影响活性污泥微生物多样性PCR-DGGE检测结果的关键因素,基于SDS的裂解法是用于活性污泥微生物多样性PCR-DGGE研究的一种简便、可靠的总DNA提取方法.     

利用DGT高分辨率研究沉积物孔隙水中重金属的浓度和释放通量

2006年5月采集了大辽河河段3个柱状沉积物,测定了沉积物的理化性质和重金属元素的含量,并利用常规离心方法和DGT方法测定了柱状沉积物孔隙水中重金属元素的含量.研究发现沉积物中Cd、Co、Cr和Cu元素含量高低的顺序依次是Cr>Cu>Co>Cd.用DGT方法测定的孔隙水中Cd、Co、Cr和Cu的浓度比用离心方法测定的浓度要低.DGT测定的孔隙水中Cd、Co、Cr和Cu的浓度c_DGT与离心方法测定的孔隙水浓度c的平均比值R分别为0.389、0.328、0.863和0.403,这说明沉积物中这几种金属从固相到液相的再补给速率大小遵循如下规律：Cr>Cu>Cd>Co.沉积物中Cd、Co、Cr和Cu元素的释放通量分别为1.12×１０^{-7～3.28×10-7　nmol/(cm2·s)、2.48×１０-7～10.40×10-7　nmol/(cm2·s)、8.80×１０-6～12.65×10-6 nmol/(cm2·s)和6.14×１０-6～13.93×10-6　nmol/(cm2·s).相关分析结果表明,Cd和Cu元素的迁移转化主要受有机质影响;而Cr元素的迁移转化除了受有机质影响外,还受铁锰氧化物影响比较显著;而Co元素可能受氧化还原电位影响较大.}     

Heavy metal availability and impact on activity of soil microorganisms along a Cu/Zn contamination gradient

All the regulations that define a maximum concentration of metals in the receiving soil are based on total soil metal concentration. However, the potential toxicity of a heavy metal in the soil depends on its speciation and availability. We studied the effects of heavy metal speciation and availability on soil microorganism activities along a Cu/Zn contamination gradient. Microbial biomass and enzyme activity of soil contaminated with both Cu and Zn were investigated. The results showed that microbial biomass was negatively affected by the elevated metal levels. The microbial biomass-C （Cmic）/organic C （Corg） ratio was closely correlated to heavy metal stress. There were negative correlations between soil microbial biomass, phosphatase activity and NH4NO3 extractable heavy metals. The soil microorganism activity could be predicted using empirical models with the availability of Cu and Zn. We observed that 72% of the variation in phosphatase activity could be explained by the NH4NO3-extractable and total heavy metal concentration. By considering different monitoring approaches and different viewpoints, this set of methods applied in this study seemed sensitive to site differences and contributed to a better understanding of the effects of heavy metals on the size and activity of microorganisms in soils. The data presented demonstrate the relationship between heavy metals availability and heavy metal toxicity to soil microorganism along a contamination gradient.     

Effect of a high strength chemical industry wastewater on microbial community dynamics and mesophilic methane generation

A high strength chemical industry wastewater was assessed for its impact on anaerobic microbial com- munity dynamics and consequently mesophilic methane generation. Cumulative methane production was 251 mL/g total chemical oxygen demand removed at standard temperature and pressure at the end of 30 days experimental period with a highest recorded methane percentage of 80.6% of total biogas volume. Volatile fatty acids （VFAs） analysis revealed that acetic acid was the major intermediate VFAs produced with propionic acid accumulating over the experimental period. Quantitative analysis of microbial communities in the test and control groups with quantitative real time polymerase chain reaction highlighted that in the test group, Eubacteria （96.3%） was dominant in comparison with methanogens （3.7%）. The latter were dominated by Methanomicrobiales and Methanobacteriales while in test groups increased over the experimental period, reaching a maximum on day 30. Denaturing gradient gel electrophoresis profile was performed, targeting the 16S rRNA gene of Eubacteria and Archaea, with the DNA samples extracted at 3 different time points from the test groups. A phylogenetic tree was constructed for the sequences using the neighborhood joining method. The analysis revealed that the presence of organisms resembling Syntrophomonadaceae could have contributed to increased production of acetic and propionic acid intermediates while decrease of organisms resembling Pelotomaculum sp. could have most likely contributed to accumulation of propionic acid. This study suggested that the degradation of organic components within the high strength industrial wastewater is closely linked with the activity of certain niche microbial communities within eubacteria and methanogens.     

广西不同石漠化等级下SPAC水势梯度及其环境效应

以野外观测为基础,对广西不同石漠化等级(无石漠化、轻度石漠化、中度石漠化和重度石漠化)下土壤-植被-大气连续体(Soil-Plant-Atmosphere Continuum,简称SPAC)系统中的水势日变化、气象因子日变化过程进行了研究。结果表明:随着石漠化程度的增加,大气水势降低,大气水势对不同石漠化程度的反应敏感。岩溶区石漠化等级下植物和土壤水势较低,不同石漠化条件下的植物叶水势在-7.79±0.43~-2.68±0.11 Mpa之间,土壤水势在-4.00±0~-0.08±0.04 Mpa之间,重度石漠化等级下植物处于萎蔫状态。植物在正午受到的水分亏缺程度为:重度石漠化中度石漠化无石漠化轻度石漠化。无石漠化下植物叶片水势与大气温度呈正相关关系,与大气相对湿度呈负相关关系,轻度石漠化、中度石漠化和重度石漠化下植物叶片水势与大气温度呈负相关关系,与大气相对湿度呈正相关关系。水分在SPAC系统中运移,其能量消耗主要集中在叶片-大气的过程。叶-气水势差差值大小为:中度石漠化重度石漠化轻度石漠化无石漠化。随着石漠化程度的增加,SPAC水势梯度提高,各介质层水势差的增大,提高了水分循环和能量交换的强度。     

高效液相色谱法测定水中的六种邻苯二甲酸酯研究

建立了高效液相色谱法测定水中六种邻苯二甲酸酯(邻苯二甲酸二甲酯、邻笨二甲酸二乙酯、邻苯二甲酸二丁酯、邻苯二甲酸二(2-乙基己基)酯、邻苯二甲酸二辛酯、邻苯二甲酸丁基苄酯)的检测方法.对水样中邻苯二甲酸酯的萃取条件和高效液相色谱分析条件进行优化,采用正己烷二次萃取,浓缩定容后分析,以乙腈-水为流动相梯度洗脱,紫外检测波长226 nm,16 min可将六种邻苯二甲酸酯分离出.方法的检出限为0.13μg/L ～0.37 μg/L,加标回收率为78.6％～118.5％,相对标准偏差为0.82％～2.17％,是一种理想的测定水中六种邻苯二甲酸酯的方法.     

某生活垃圾卫生填埋场渗滤液的梯度分离与表征

目前,渗滤液中污染物的粒度分布及其在渗滤液污染控制中的作用日益受到关注。通过系列微滤膜(1.2μm及0.45μm)对某生活垃圾卫生填埋场渗滤液各处理单元的渗滤液进行梯度分离,发现悬浮物对COD、浊度的影响较大;COD主要在胶体态和可溶解态间分配,不同渗滤液中的分配情况不同;磷主要与胶体、悬浮物以各种形式结合而存在;细胶粒和溶解态等小分子对TN的贡献大;不同粒度物质对pH的影响不明显;总残渣在可溶态组分中所占比例较大。膜微滤处理渗滤液可以有效的去除一部分物质,使COD、TP、TN、浊度、电导率都有不同程度的降低,pH逐渐升高,但对总N、残渣的去除效果不好。     

Testing hypotheses on shape and distribution of ecological response curves

Niche theory with hypotheses on shape and distribution of ecological response curves is used in the studies of resource sharing of competing plant species. Predictions based on theory should be applicable when, e.g., effects of competing species on the ecological tolerances are assessed or species’ diversity along a resource gradient is evaluated. We studied the ecological response curves of competing plant species along a resource gradient in boreal forests. The study was based on nation-wide soil and vegetation data collected from 455 sample plots on boreal forests in Finland. Species response curves along a soil fertility gradient (in terms of C/N ratio) were estimated using generalized additive models. Distribution of species optima and the relationship of niche width and skewness to the location of the optimum were analyzed with new bootstrap tests. The developed tests can account for the effects of truncation observed in the response curves of several species and for the uneven distribution of observations on the gradient.The estimated response curves of the major field layer species of boreal forests were not evenly distributed along soil C/N gradient. The density of optima peaked with relatively high nitrogen availability. Species with optima at low nitrogen availability had relatively broad realized niches. Niche width was negatively correlated with the density of optima. Species optima were packed and niches were narrow at high resource levels. This result suggests that a greater number of more specialized species can occur and interspecific competition decreases niche widths at high resource levels. Species were packed in the gradient where the C/N ratio was lower than 25, i.e., in conditions where nitrification can take place. This indicates that the majority of the vascular plants of boreal forests are favoured by the availability of NO₃⁻. Those few species thriving at high C/N ratios have broader realized niches.     

The structure of the fire fighting foam surfactant Forafac®1157 and its biological and photolytic transformation products

For several decades, perfluorooctane sulfonate (PFOS) has widely been used as a fluorinated surfactant in aqueous film forming foams used as hydrocarbon fuel fire extinguishers. Due to concerns regarding its environmental persistence and toxicological effects, PFOS has recently been replaced by novel fluorinated surfactants such as Forafac®1157, developed by the DuPont company. The major component of Forafac®1157 is a 6:2 fluorotelomer sulfonamide alkylbetaine (6:2 FTAB), and a link between the trade name and the exact chemical structure is presented here to the scientific community for the first time. In the present work, the structure of the 6:2 FTAB was elucidated by ¹H, ¹³C and ¹⁹F nuclear magnetic resonance spectroscopy and high-resolution mass spectrometry. Moreover, its major metabolites from blue mussel (Mytilus edulis) and turbot (Scophthalmus maximus) and its photolytic transformation products were identified. Contrary to what has earlier been observed for PFOS, the 6:2 FTAB was extensively metabolized by blue mussel and turbot exposed to Forafac®1157. The major metabolite was a deacetylated betaine species, from which mono- and di-demethylated metabolites also were formed. Another abundant metabolite was the 6:2 fluorotelomer sulfonamide. In another experiment, Forafac®1157 was subjected to UV-light induced photolysis. The experimental conditions aimed to simulate Arctic conditions and the deacetylated species was again the primary transformation product of 6:2 FTAB. A 6:2 fluorotelomer sulfonamide was also formed along with a non-identified transformation product. The environmental presence of most of the metabolites and transformation products was qualitatively demonstrated by analysis of soil samples taken in close proximity to an airport fire training facility.     

Assessment Tools for Urban Catchments: Defining Observable Biological Potential1

Abstract: Urbanization represents a strong and increasingly more prevalent impact on stream quality worldwide. One of the characteristic effects of increased urbanization is a consistent decline in biological stream condition. The characterization of this biological degradation with increasing urbanization presents a number of advantages for the study and management of urban streams and catchments. In this paper, the limitation of biological condition with urbanization, called observed biological potential, is characterized. Using an urban intensity index and a biological index developed specifically for urban systems in the Baltimore, Maryland; Cleveland, Ohio; and San Jose, California regions, two principal techniques were compared (quantile regression and bin regression) to define observed biological potential along urban gradients. Quantile regression was selected as the preferable tool for describing observed biological potential given the consistency with which it can be applied and its statistical efficiency, however, bin quantile regression performed similarly. Having identified a numeric approximation of observed biological potential, two methods for identifying factors related to distance from potential as a way of identifying critical environmental factors affecting biological condition in urban areas were explored. The results of this work can be used for identifying benchmarks for urban stream biological condition, identifying limiting catchment characteristics, and prioritizing urban stream management efforts.