Modelling spatial zero-inflated continuous data with an exponentially compound Poisson process

A parsimonious model is presented as an alternative to delta approaches to modelling zero-inflated continuous data. The data model relies on an exponentially compound Poisson process, also called the law of leaks (LOL). It represents the process of sampling resources that are spatially distributed as Poisson distributed patches, each containing a certain quantity of biomass drawn from an exponential distribution. In an application of the LOL, two latent structures are proposed to account for spatial dependencies between zero values at different scales within a hierarchical Bayesian framework. The LOL is compared to the delta-gamma (ΔΓ) distribution using bottom-trawl survey data. Results of this case study emphasize that the LOL provides slightly better fits to learning samples with a very high proportion of zero values and small strictly positive abundance data. Additionally, it offers better predictions of validation samples.     

Insecticide resistance may enhance the response to a host-plant volatile kairomone for the codling moth, <Emphasis Type="Italic">Cydia pomonella</Emphasis> (L.)

The behavioral and electroantennographic responses of Cydia pomonella (L.) to the ripe pear volatile ethyl (2E,4Z)-2,4-decadienoate (Et-E,Z-DD), were compared in insecticide-susceptible and -resistant populations originating from southern France. A dose–response relationship to this kairomonal attractant was established for antennal activity and did not reveal differences between susceptible and resistant strains. Conversely, males of the laboratory strains expressing metabolic [cytochrome P450-dependent mixed-function oxidases (mfo)] or physiological (kdr-type mutation of the sodium-channel gene) resistance mechanisms exhibited a significantly higher response to Et-E,Z-DD than those of the susceptible strain in a wind tunnel experiment. No response of the females to this kairomone could be obtained in our wind-tunnel conditions. In apple orchards, mfo-resistant male moths were captured at significantly higher rates in kairomone-baited traps than in traps baited with the sex pheromone of C. pomonella. Such a differential phenomenon was not verified for the kdr-resistant insects, which exhibited a similar response to both the sex pheromone and the kairomonal attractant in apple orchards. Considering the widespread distribution of metabolic resistance in European populations of C. pomonella and the enhanced behavioral response to Et-E,Z-DD in resistant moths, the development of control measures based on this kairomonal compound would be of great interest for the management of insecticide resistance in this species.     

Microbial activity and water-soluble trace element species in the rhizosphere of spring wheat (Triticum aestivum cv. USU-Perigee)

The influence of microbial activity on the concentration and speciation of trace elements (TEs) was assessed in a study on the bioavailability of TEs for edible plants. A growth chamber experiment with spring wheat (Triticum aestivum cv. USU-Perigee) was conducted and the bulk (Bk) and the rhizosphere (Rz) soil components were collected at maturity. A characterization of the microbial activity and population was made by measuring the microbial biomass, enzymes (acid phosphatase, arylsulfatase, dehydrogenase and urease) and 16S rDNA DGGE profiles. In soil water extracts, major solutes (H(+), Ca, Mg, Na, NH(4), K, Cl, NO(3), SO(4), total N, DON and DOC) and trace elements (Al, As, Cd, Ce, Cr, Cu, Fe, Pb, Tl, and Zn) including monomeric Al species, free Cu(2+) and labile Zn were determined. The partition of the variation indicated that 12.1% of the distribution of TEs in the Bk soil was significantly and exclusively explained by chemical properties while this value was less than 0.1% for the Rz soil. To the contrary, microbial properties contributed significantly to 12.3% of the distribution of TEs in the Rz soil whereas it explained less than 0.1% for the Bk soil. Detailed redundancy analyses identified several potential mechanisms (e.g. weathering of primary mineral, solubilisation of sesquioxides, bacterial effect on the redox status) explaining the fate of TEs in the Bk and Rz soils. This study revealed that microbial activity is strongly associated to the speciation of trace elements in the Rz of edible plants and points to some microbial processes influencing TE speciation.     

Extra-pair paternity in the monogamous Alpine marmot revealed by nuclear DNA microsatellite analysis

The genetic parentage and pedigrees of 35 litters from 12 family groups of monogamous Alpine marmot (Marmota marmota) in the French Alps were analyzed using six hypervariable sequence repeat nuclear loci (microsatellites). All of the members of these family groups were sampled during a 5-year period. Hairs taken directly from animals served as a source of DNA for amplification of the loci. Our results indicate that the genetic mating system of the Alpine marmot is quite different from a strictly monogamous breeding system. Extra-pair paternity occurred in 11 of the 35 litters (31.4%). Of the 134 juveniles typed, 26 (19.4%) could be attributed to extra-pair copulation (EPC). We examine hypotheses which could explain the evolution of EPC and discuss the different patterns of extra-pair mating. Received: 11 July 1997 / Accepted after revision: 23 May 1998     

Current developments in soil ecotoxicology and the need for strengthening soil ecotoxicology in Europe: results of a stakeholder workshop

Background

Soil is one of our most important resources and fulfills many ecological functions such as storage and filtration of water and nutrients, transformation of chemical compounds and nutrients, biomass production, and carbon storage. Such soil functions support ecosystem services provided by soils, which need to be protected to protect soil fertility. However, European soils often contain elevated concentrations of contaminants, putting biodiversity of soil organisms as well as the ecological functions and services at risk. To promote soil ecotoxicology in Switzerland, the Swiss Centre for Applied Ecotoxicology together with the Federal Office for Environment and the Federal Office for Agriculture organized a stakeholder workshop on 7 June 2018 with participants from research, governmental bodies, and associations. One goal of this workshop was to inform participants about currently available risk assessment approaches for soil, the soil risk assessment for plant protection products in Europe, available bioassays and bioindicators, and results of research projects on soil contaminants in Switzerland. Another goal was to discuss the needs for research in soil ecotoxicology in Switzerland and to identify next steps, potential projects, and future collaborations.

Results

The main needs identified during the workshop were the establishment of (bio)indicators to measure soil fertility, functional parameters to determine soil functions, and the preservation of soil biodiversity. Another priority listed was the formation of a working group, which addresses the issue of the development of environmental quality standards for soil. The need for experimental field sites for implementing and testing new approaches or tools for assessing soil quality was also discussed.

Conclusion

The next steps planned are two workshops with national and international experts in soil ecotoxicology to develop a soil monitoring concept for Switzerland and to find suitable bioindicators to evaluate soil fertility. Additionally, a literature review will be performed summarizing the current ecotoxicological state of the art with regard to the development of bioindicators in relation to the monitoring of plant protection products in Swiss soil, to evaluate their effects on soil fertility. Furthermore, all attendees agreed on the need for annual meetings or workshops where experts can present scientific results, participants can exchange information, and future projects and collaborations can be developed.

     

Acquisition of fission–fusion social organization in a chimpanzee (Pan troglodytes troglodytes) community released into the wild

The social aspects of primate reintroduction are of primary importance to the success of release programs and need to be assessed through the study of changes in social behavior over time. This study reports on the development of social structure and organization in a community of 37 chimpanzees (Pan troglodytes troglodytes) released into the wild in the Conkouati Douli National Park, Republic of Congo. Analyses of post-release monitoring data collected over 10 years on association patterns between individuals show that during the years following individual releases, chimpanzees exhibited changing social structure and organization until they stabilized in one community living in a fission–fusion system. Social organization development was directly affected by several factors including community size and experience in the wild, while social structure was affected by individual characteristics: gender, pre-release history, and release history. Similarities between social structure and organization observed in the released community and wild chimpanzee communities demonstrate that the release program is a success from a social point of view.     

The sequestration of trace elements by willow (Salix purpurea)—which soil properties favor uptake and accumulation?

The effect of soil properties on trace element (TE) extraction by the Fish Creek willow cultivar was assessed in a 4-month greenhouse experiment with two contrasted soils and two mycorrhizal treatments (Rhizophagus irregularis and natives). Aboveground tissues represented more than 82 % of the willow biomass and were the major sink for TE. Cadmium and Zn were concentrated in leaves, while As, Cu, Ni, and Pb were mostly found in roots. Willow bioconcentration ratios were below 0.20 for As, Cu, Ni, and Pb and reached 10.0 for Cd and 1.97 for Zn. More significant differences in willow biomass, TE concentrations, and contents were recorded between soil types than between mycorrhizal treatments. A slight significant increase in Cu extraction by willow in symbiosis with Rhizophagus irregularis was observed and was linked to increased shoot biomass. Significant regression models between TE in willow and soil properties were found in leaves (As, Ni), shoots (As, Cd, Cu, Ni), and roots (As, Cu, Pb). Most of the explanation was shared between soil water-soluble TE and fertility variables, indicating that TE phytoextraction is related to soil properties. Managing interactions between TE and major nutrients in soil appeared as a key to improve TE phytoextraction by willows.     

A half-century analysis of landscape dynamics in southern Québec,Canada

We studied landscape dynamics for three time periods (<1950, 1965, and 1997) along a gradient of agricultural intensity from highly intensive agriculture to forested areas in southern Québec. Air photos were analyzed to obtain long-term information on land cover (crop and habitat types) and linear habitats (hedgerows and riparian habitats) and landscape metrics were calculated to quantify changes in habitat configuration. Anthropogenic areas increased in all types of landscapes but mostly occurred in the highly disturbed cash crop dominated landscape. Perennial crops (pasture and hayfields) were largely converted into annual crops (corn and soybean) between 1965 and 1997. The coalescence of annual crop fields resulted in a more homogeneous agricultural landscape. Old fields and forest cover was consistently low and forest fragmentation remained stable through time in the intensive agriculture landscapes. However, forest cover increased and forest fragmentation receded in the forest-dominated landscapes following farm abandonment and the transition of old fields into forests. Tree-dominated hedgerows and riparian habitats increased in areas with intensive agriculture. Observed changes in land cover classes are related to proximate factors, such as surficial deposits and topography. Agriculture intensification occurred in areas highly suitable for agriculture whereas farm abandonment was observed in poor-quality agriculture terrains. Large-scale conversion of perennial crops into annual crops along with continued urbanization exerts strong pressures on residual natural habitats and their inhabiting wildlife. The afforestation process occurring in the more forested landscapes along with the addition of tree-dominated hedgerows and riparian habitats in the agriculture-dominated landscapes should improve landscape ecological value.